Wall clock time and date at job start Wed Apr 1 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47052 * 2 1 4 4 C 1.52996 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47263 * 304.99889 * 4 3 2 6 6 C 1.50701 * 109.47043 * 185.00244 * 4 3 2 7 7 O 1.21287 * 119.99699 * 239.99516 * 6 4 3 8 8 N 1.34779 * 120.00515 * 60.00324 * 6 4 3 9 9 C 1.46491 * 120.00288 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.64670 * 31.85232 * 9 8 6 11 11 C 1.54335 * 110.85036 * 268.68981 * 9 8 6 12 12 N 1.47021 * 107.26526 * 219.67597 * 11 9 8 13 13 C 1.36934 * 125.64867 * 178.84756 * 12 11 9 14 14 H 1.08004 * 120.00035 * 342.88139 * 13 12 11 15 15 C 1.38812 * 120.00404 * 162.87654 * 13 12 11 16 16 N 1.31622 * 119.99728 * 331.97362 * 15 13 12 17 17 Si 1.86799 * 120.00267 * 151.97240 * 15 13 12 18 18 H 1.48506 * 109.46858 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47388 * 60.00205 * 17 15 13 20 20 H 1.48501 * 109.46953 * 300.00008 * 17 15 13 21 21 C 1.47421 * 108.70506 * 358.58056 * 12 11 9 22 22 C 1.54910 * 104.83090 * 24.35923 * 21 12 11 23 23 H 1.08994 * 111.00813 * 81.06389 * 22 21 12 24 24 O 1.42905 * 111.00656 * 204.87774 * 22 21 12 25 25 C 1.42895 * 114.00023 * 268.55029 * 24 22 21 26 26 C 1.50698 * 109.47411 * 64.99765 * 4 3 2 27 27 C 1.38234 * 119.61222 * 84.99896 * 26 4 3 28 28 C 1.38631 * 119.15655 * 179.97438 * 27 26 4 29 29 C 1.38668 * 118.42122 * 0.02562 * 28 27 26 30 30 C 1.38178 * 119.16656 * 359.97438 * 29 28 27 31 31 N 1.31846 * 119.62173 * 264.73023 * 26 4 3 32 32 H 1.09003 * 109.47004 * 300.00013 * 1 2 3 33 33 H 1.08998 * 109.47419 * 59.99699 * 1 2 3 34 34 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46561 * 240.00536 * 2 1 3 36 36 H 1.09002 * 109.46959 * 120.00443 * 2 1 3 37 37 H 1.09003 * 109.47226 * 60.00123 * 3 2 1 38 38 H 1.08998 * 109.47254 * 300.00402 * 3 2 1 39 39 H 0.97000 * 119.99646 * 359.97438 * 8 6 4 40 40 H 1.09002 * 109.99582 * 100.19542 * 11 9 8 41 41 H 1.08999 * 109.77686 * 339.02724 * 11 9 8 42 42 H 0.97004 * 120.00411 * 353.95791 * 16 15 13 43 43 H 1.09000 * 110.37006 * 143.19570 * 21 12 11 44 44 H 1.09005 * 110.36937 * 265.52137 * 21 12 11 45 45 H 1.09007 * 109.46741 * 299.99058 * 25 24 22 46 46 H 1.08997 * 109.47305 * 59.99594 * 25 24 22 47 47 H 1.09005 * 109.47081 * 179.97438 * 25 24 22 48 48 H 1.07993 * 120.42293 * 0.02562 * 27 26 4 49 49 H 1.08001 * 120.78908 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.41740 * 179.97438 * 29 28 27 51 51 H 1.07995 * 119.62202 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0723 2.8579 0.1232 7 8 4.7693 3.3324 -0.7486 8 7 3.7473 3.5964 1.2028 9 6 4.2351 4.9724 1.3230 10 1 4.3313 5.4333 0.3399 11 6 5.5806 5.0143 2.0780 12 7 5.5486 6.1888 2.9617 13 6 6.5456 6.5693 3.8198 14 1 7.3164 5.8657 4.0979 15 6 6.5658 7.8592 4.3322 16 7 6.0345 8.8484 3.6455 17 14 7.3468 8.1911 5.9963 18 1 7.2386 9.6377 6.3142 19 1 8.7782 7.7978 5.9587 20 1 6.6438 7.4016 7.0393 21 6 4.2682 6.8928 2.7663 22 6 3.2977 5.8098 2.2325 23 1 2.9012 5.2045 3.0476 24 8 2.2394 6.3992 1.4742 25 6 1.0791 6.7169 2.2452 26 6 4.0718 0.8422 -1.2886 27 6 4.2003 1.6404 -2.4098 28 6 4.6634 1.0785 -3.5895 29 6 4.9808 -0.2713 -3.5975 30 6 4.8267 -1.0063 -2.4376 31 7 4.3883 -0.4370 -1.3315 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6766 1.9563 -0.8899 39 1 3.1896 3.2169 1.8999 40 1 6.4032 5.1061 1.3688 41 1 5.6991 4.1074 2.6710 42 1 5.7079 8.6935 2.7454 43 1 3.9066 7.2926 3.7136 44 1 4.3830 7.6930 2.0350 45 1 0.6830 5.8075 2.6972 46 1 1.3464 7.4256 3.0290 47 1 0.3227 7.1603 1.5975 48 1 3.9440 2.6886 -2.3671 49 1 4.7735 1.6776 -4.4813 50 1 5.3439 -0.7423 -4.4991 51 1 5.0721 -2.0580 -2.4354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213335726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:46 Heat of formation + Delta-G solvation = -22.970402 kcal Electronic energy + Delta-G solvation = -31386.879241 eV Core-core repulsion = 27287.036389 eV Total energy + Delta-G solvation = -4099.842851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.93011 -39.56981 -38.35309 -36.21118 -35.92292 -34.31481 -32.63198 -32.22352 -31.88480 -29.57133 -28.69104 -27.24113 -26.28358 -25.26944 -24.09892 -23.65202 -22.70018 -21.39659 -20.77101 -20.48864 -19.92641 -17.80966 -17.22222 -17.10965 -16.67910 -16.20527 -15.78706 -15.59540 -15.26791 -14.91270 -14.80699 -14.55419 -14.14666 -14.03898 -13.76048 -13.61373 -13.57944 -13.23018 -13.10318 -13.05995 -12.75249 -12.61736 -12.29777 -12.07409 -11.75073 -11.63806 -11.46398 -11.34692 -11.29216 -11.12729 -10.87505 -10.76037 -10.60395 -10.27149 -10.04756 -10.00015 -9.70947 -9.60349 -9.50259 -9.34658 -9.00686 -8.82260 -8.44800 -7.02046 -6.14060 -3.20720 1.01662 1.24249 2.60916 3.05624 3.48359 3.51123 3.69651 3.72636 3.89401 4.05777 4.37219 4.57609 4.67272 4.69511 4.78537 4.82930 4.90239 5.00512 5.04969 5.06135 5.22788 5.23638 5.29606 5.32750 5.40762 5.42572 5.45457 5.48943 5.53719 5.59842 5.62163 5.67028 5.75561 5.78167 5.84203 5.86157 5.95526 5.96449 6.08144 6.11806 6.16556 6.33559 6.56164 6.63147 6.66444 6.79880 6.86963 7.44340 7.52731 7.73082 7.87304 8.23519 8.42979 8.95469 9.75332 10.26947 11.17963 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002722 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.073476 B =10282.367373 C =11296.861884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.058 4.058 5 H 0.116 0.884 6 C 0.521 3.479 7 O -0.531 6.531 8 N -0.710 5.710 9 C 0.139 3.861 10 H 0.105 0.895 11 C 0.129 3.871 12 N -0.598 5.598 13 C -0.340 4.340 14 H 0.068 0.932 15 C -0.024 4.024 16 N -0.914 5.914 17 Si 1.065 2.935 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.293 1.293 21 C 0.131 3.869 22 C 0.064 3.936 23 H 0.071 0.929 24 O -0.379 6.379 25 C 0.033 3.967 26 C 0.138 3.862 27 C -0.129 4.129 28 C -0.086 4.086 29 C -0.174 4.174 30 C 0.087 3.913 31 N -0.477 5.477 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.270 0.730 43 H 0.056 0.944 44 H 0.040 0.960 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.082 0.918 48 H 0.151 0.849 49 H 0.132 0.868 50 H 0.130 0.870 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 -18.065 -9.900 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.143 4.143 4 C -0.080 4.080 5 H 0.134 0.866 6 C 0.306 3.694 7 O -0.407 6.407 8 N -0.360 5.360 9 C 0.034 3.966 10 H 0.123 0.877 11 C 0.003 3.997 12 N -0.326 5.326 13 C -0.467 4.467 14 H 0.086 0.914 15 C -0.226 4.226 16 N -0.554 5.554 17 Si 0.895 3.105 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.221 1.221 21 C 0.004 3.996 22 C 0.004 3.996 23 H 0.089 0.911 24 O -0.297 6.297 25 C -0.064 4.064 26 C 0.000 4.000 27 C -0.149 4.149 28 C -0.112 4.112 29 C -0.194 4.194 30 C -0.070 4.070 31 N -0.186 5.186 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.169 0.831 49 H 0.150 0.850 50 H 0.148 0.852 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.481 -16.983 -8.767 22.296 hybrid contribution -0.259 -0.928 -1.364 1.670 sum -11.740 -17.911 -10.131 23.691 Atomic orbital electron populations 1.21776 0.95799 1.01592 1.01793 1.21504 0.95526 0.95758 1.02962 1.21588 0.90978 0.98414 1.03281 1.20163 0.97405 0.93478 0.96996 0.86613 1.20243 0.80163 0.87213 0.81769 1.90690 1.37711 1.72682 1.39646 1.45905 1.53123 1.14294 1.22682 1.22093 0.93675 0.79968 1.00820 0.87655 1.21668 0.93611 0.92117 0.92346 1.44376 1.14665 1.27907 1.45701 1.19747 1.07220 0.97768 1.21964 0.91448 1.25801 1.01088 0.90524 1.05182 1.70784 1.40972 1.31557 1.12128 0.83522 0.75520 0.75894 0.75605 1.21023 1.21907 1.22077 1.21906 0.85357 0.93048 0.99245 1.23723 0.87744 0.95327 0.92779 0.91121 1.87882 1.24794 1.81683 1.35300 1.22736 0.87812 0.99228 0.96585 1.20411 0.96069 0.89581 0.93952 1.22415 0.98027 1.02057 0.92369 1.21640 0.96305 0.94883 0.98343 1.22117 1.02045 0.95279 0.99975 1.22599 0.96195 1.00049 0.88144 1.67348 1.10738 1.11649 1.28847 0.92641 0.92885 0.92750 0.91581 0.91470 0.90610 0.91117 0.76706 0.94736 0.94992 0.91874 0.92570 0.94255 0.94493 0.93673 0.89971 0.83120 0.85032 0.85157 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.01 5.72 -26.73 -0.15 -1.17 16 3 C -0.10 -0.95 4.62 -26.74 -0.12 -1.07 16 4 C -0.06 -0.66 2.52 -92.93 -0.23 -0.90 16 5 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 6 C 0.52 7.45 6.94 -10.98 -0.08 7.38 16 7 O -0.53 -9.41 12.75 5.55 0.07 -9.34 16 8 N -0.71 -9.86 4.97 -52.03 -0.26 -10.12 16 9 C 0.14 2.49 3.05 -66.09 -0.20 2.29 16 10 H 0.11 2.09 7.55 -51.93 -0.39 1.70 16 11 C 0.13 2.79 7.00 -3.06 -0.02 2.77 16 12 N -0.60 -15.16 3.29 -170.07 -0.56 -15.72 16 13 C -0.34 -9.59 10.02 -15.06 -0.15 -9.74 16 14 H 0.07 1.90 7.97 -52.48 -0.42 1.48 16 15 C -0.02 -0.68 5.09 -17.43 -0.09 -0.77 16 16 N -0.91 -27.55 12.93 55.49 0.72 -26.84 16 17 Si 1.07 25.16 30.00 -169.99 -5.10 20.06 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.13 3.02 5.03 -2.53 -0.01 3.00 16 22 C 0.06 1.13 3.12 -24.58 -0.08 1.05 16 23 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 24 O -0.38 -6.35 10.52 -35.23 -0.37 -6.72 16 25 C 0.03 0.43 10.89 101.05 1.10 1.53 16 26 C 0.14 1.75 4.88 -82.59 -0.40 1.34 16 27 C -0.13 -1.66 8.27 -39.44 -0.33 -1.98 16 28 C -0.09 -0.92 10.18 -39.28 -0.40 -1.32 16 29 C -0.17 -1.64 10.11 -39.44 -0.40 -2.04 16 30 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16 31 N -0.48 -5.85 9.63 -9.48 -0.09 -5.94 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.65 6.90 -51.93 -0.36 0.29 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.59 7.43 -51.93 -0.39 0.21 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 4.39 7.92 -40.82 -0.32 4.07 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 42 H 0.27 8.21 6.06 -40.82 -0.25 7.96 16 43 H 0.06 1.38 7.95 -51.93 -0.41 0.97 16 44 H 0.04 1.00 6.81 -51.93 -0.35 0.65 16 45 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.15 2.10 5.94 -52.49 -0.31 1.79 16 49 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 50 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 51 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 409.80 15.07 6.18 6.18 Total: -1.00 -33.86 409.80 -9.12 -42.99 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.31 Total: 5.13 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.39 Total: 0.33 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.19 Total: -58.61 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.30 Total: -16.07 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.86 -9.12 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213335726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.015 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds