Wall clock time and date at job start Wed Apr 1 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47052 * 2 1 4 4 C 1.52996 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47263 * 304.99889 * 4 3 2 6 6 C 1.50701 * 109.47043 * 185.00244 * 4 3 2 7 7 O 1.21287 * 119.99699 * 239.99516 * 6 4 3 8 8 N 1.34779 * 120.00515 * 60.00324 * 6 4 3 9 9 C 1.46491 * 120.00288 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.64670 * 31.85232 * 9 8 6 11 11 C 1.54335 * 110.85036 * 268.68981 * 9 8 6 12 12 N 1.47021 * 107.26526 * 219.67597 * 11 9 8 13 13 C 1.36934 * 125.64867 * 178.84756 * 12 11 9 14 14 H 1.08004 * 120.00035 * 342.88139 * 13 12 11 15 15 C 1.38812 * 120.00404 * 162.87654 * 13 12 11 16 16 N 1.31622 * 119.99728 * 331.97362 * 15 13 12 17 17 Si 1.86799 * 120.00267 * 151.97240 * 15 13 12 18 18 H 1.48506 * 109.46858 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47388 * 60.00205 * 17 15 13 20 20 H 1.48501 * 109.46953 * 300.00008 * 17 15 13 21 21 C 1.47421 * 108.70506 * 358.58056 * 12 11 9 22 22 C 1.54910 * 104.83090 * 24.35923 * 21 12 11 23 23 H 1.08994 * 111.00813 * 81.06389 * 22 21 12 24 24 O 1.42905 * 111.00656 * 204.87774 * 22 21 12 25 25 C 1.42895 * 114.00023 * 268.55029 * 24 22 21 26 26 C 1.50698 * 109.47411 * 64.99765 * 4 3 2 27 27 C 1.38234 * 119.61222 * 84.99896 * 26 4 3 28 28 C 1.38631 * 119.15655 * 179.97438 * 27 26 4 29 29 C 1.38668 * 118.42122 * 0.02562 * 28 27 26 30 30 C 1.38178 * 119.16656 * 359.97438 * 29 28 27 31 31 N 1.31846 * 119.62173 * 264.73023 * 26 4 3 32 32 H 1.09003 * 109.47004 * 300.00013 * 1 2 3 33 33 H 1.08998 * 109.47419 * 59.99699 * 1 2 3 34 34 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46561 * 240.00536 * 2 1 3 36 36 H 1.09002 * 109.46959 * 120.00443 * 2 1 3 37 37 H 1.09003 * 109.47226 * 60.00123 * 3 2 1 38 38 H 1.08998 * 109.47254 * 300.00402 * 3 2 1 39 39 H 0.97000 * 119.99646 * 359.97438 * 8 6 4 40 40 H 1.09002 * 109.99582 * 100.19542 * 11 9 8 41 41 H 1.08999 * 109.77686 * 339.02724 * 11 9 8 42 42 H 0.97004 * 120.00411 * 353.95791 * 16 15 13 43 43 H 1.09000 * 110.37006 * 143.19570 * 21 12 11 44 44 H 1.09005 * 110.36937 * 265.52137 * 21 12 11 45 45 H 1.09007 * 109.46741 * 299.99058 * 25 24 22 46 46 H 1.08997 * 109.47305 * 59.99594 * 25 24 22 47 47 H 1.09005 * 109.47081 * 179.97438 * 25 24 22 48 48 H 1.07993 * 120.42293 * 0.02562 * 27 26 4 49 49 H 1.08001 * 120.78908 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.41740 * 179.97438 * 29 28 27 51 51 H 1.07995 * 119.62202 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0723 2.8579 0.1232 7 8 4.7693 3.3324 -0.7486 8 7 3.7473 3.5964 1.2028 9 6 4.2351 4.9724 1.3230 10 1 4.3313 5.4333 0.3399 11 6 5.5806 5.0143 2.0780 12 7 5.5486 6.1888 2.9617 13 6 6.5456 6.5693 3.8198 14 1 7.3164 5.8657 4.0979 15 6 6.5658 7.8592 4.3322 16 7 6.0345 8.8484 3.6455 17 14 7.3468 8.1911 5.9963 18 1 7.2386 9.6377 6.3142 19 1 8.7782 7.7978 5.9587 20 1 6.6438 7.4016 7.0393 21 6 4.2682 6.8928 2.7663 22 6 3.2977 5.8098 2.2325 23 1 2.9012 5.2045 3.0476 24 8 2.2394 6.3992 1.4742 25 6 1.0791 6.7169 2.2452 26 6 4.0718 0.8422 -1.2886 27 6 4.2003 1.6404 -2.4098 28 6 4.6634 1.0785 -3.5895 29 6 4.9808 -0.2713 -3.5975 30 6 4.8267 -1.0063 -2.4376 31 7 4.3883 -0.4370 -1.3315 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6766 1.9563 -0.8899 39 1 3.1896 3.2169 1.8999 40 1 6.4032 5.1061 1.3688 41 1 5.6991 4.1074 2.6710 42 1 5.7079 8.6935 2.7454 43 1 3.9066 7.2926 3.7136 44 1 4.3830 7.6930 2.0350 45 1 0.6830 5.8075 2.6972 46 1 1.3464 7.4256 3.0290 47 1 0.3227 7.1603 1.5975 48 1 3.9440 2.6886 -2.3671 49 1 4.7735 1.6776 -4.4813 50 1 5.3439 -0.7423 -4.4991 51 1 5.0721 -2.0580 -2.4354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213335726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:45 Heat of formation + Delta-G solvation = -45.492183 kcal Electronic energy + Delta-G solvation = -31387.855858 eV Core-core repulsion = 27287.036389 eV Total energy + Delta-G solvation = -4100.819469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94285 -40.77104 -39.70647 -37.72087 -36.78340 -35.86463 -33.80608 -33.39915 -33.00423 -30.81029 -30.11601 -28.82635 -27.58849 -26.27626 -25.70395 -24.49031 -23.71772 -22.51765 -22.19560 -21.86258 -21.19297 -19.73221 -18.42396 -18.20477 -17.82337 -17.26711 -16.90206 -16.73453 -16.26659 -16.21858 -15.86989 -15.78426 -15.62130 -15.50861 -15.12079 -15.05420 -14.65878 -14.39923 -14.29707 -14.08193 -13.86020 -13.82791 -13.39562 -13.27867 -13.01904 -12.93055 -12.65983 -12.55013 -12.47625 -12.40601 -12.07564 -12.01440 -11.90571 -11.81309 -11.69213 -11.53615 -10.99045 -10.75632 -10.66076 -10.54574 -10.39467 -10.15562 -9.84864 -9.13823 -8.38972 -5.43222 0.18834 0.39947 1.45680 1.57371 1.64762 1.84100 1.86852 2.48011 2.67869 2.88613 3.14029 3.21196 3.37342 3.41966 3.64978 3.81130 3.84506 3.89843 3.95390 4.03959 4.09762 4.19476 4.24645 4.27317 4.29362 4.31253 4.46709 4.50553 4.54956 4.65988 4.68949 4.70804 4.77817 4.80901 4.83021 4.86982 4.91221 4.95417 4.97134 5.02375 5.24793 5.25982 5.28508 5.34813 5.38379 5.49053 5.58723 5.82236 6.11623 6.24632 6.40036 6.77900 7.02127 7.11627 7.60901 8.15214 8.91620 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002722 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.073476 B =10282.367373 C =11296.861884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.099 4.099 4 C -0.047 4.047 5 H 0.127 0.873 6 C 0.521 3.479 7 O -0.567 6.567 8 N -0.696 5.696 9 C 0.158 3.842 10 H 0.082 0.918 11 C 0.130 3.870 12 N -0.617 5.617 13 C -0.353 4.353 14 H 0.064 0.936 15 C -0.075 4.075 16 N -0.941 5.941 17 Si 1.120 2.880 18 H -0.291 1.291 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.135 3.865 22 C 0.089 3.911 23 H 0.101 0.899 24 O -0.392 6.392 25 C 0.024 3.976 26 C 0.122 3.878 27 C -0.153 4.153 28 C -0.094 4.094 29 C -0.168 4.168 30 C 0.080 3.920 31 N -0.492 5.492 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.007 0.993 41 H 0.045 0.955 42 H 0.254 0.746 43 H 0.035 0.965 44 H 0.006 0.994 45 H 0.067 0.933 46 H 0.034 0.966 47 H 0.105 0.895 48 H 0.131 0.869 49 H 0.148 0.852 50 H 0.164 0.836 51 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 -20.710 -9.298 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.137 4.137 4 C -0.069 4.069 5 H 0.144 0.856 6 C 0.308 3.692 7 O -0.446 6.446 8 N -0.347 5.347 9 C 0.052 3.948 10 H 0.100 0.900 11 C 0.003 3.997 12 N -0.345 5.345 13 C -0.481 4.481 14 H 0.081 0.919 15 C -0.271 4.271 16 N -0.583 5.583 17 Si 0.943 3.057 18 H -0.217 1.217 19 H -0.202 1.202 20 H -0.200 1.200 21 C 0.009 3.991 22 C 0.029 3.971 23 H 0.119 0.881 24 O -0.310 6.310 25 C -0.072 4.072 26 C -0.016 4.016 27 C -0.173 4.173 28 C -0.120 4.120 29 C -0.187 4.187 30 C -0.077 4.077 31 N -0.201 5.201 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.025 0.975 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.123 0.877 48 H 0.149 0.851 49 H 0.166 0.834 50 H 0.182 0.818 51 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.887 -19.678 -8.166 24.899 hybrid contribution 0.191 -0.150 -1.688 1.705 sum -12.695 -19.827 -9.854 25.522 Atomic orbital electron populations 1.21758 0.94773 1.02095 1.02111 1.21432 0.96309 0.94920 1.02458 1.21599 0.89100 0.99182 1.03791 1.20132 0.98845 0.90855 0.97063 0.85562 1.20830 0.79266 0.88204 0.80911 1.90690 1.39292 1.73658 1.40945 1.45648 1.53139 1.12566 1.23394 1.21526 0.92076 0.82218 0.98982 0.89973 1.21730 0.95070 0.91179 0.91699 1.44619 1.15116 1.28723 1.46058 1.20041 1.07898 0.97824 1.22328 0.91861 1.27305 1.01361 0.90430 1.07994 1.70909 1.43201 1.32386 1.11781 0.82817 0.75717 0.75550 0.71645 1.21652 1.20160 1.19990 1.21789 0.85984 0.93892 0.97454 1.23346 0.87219 0.93301 0.93200 0.88129 1.87879 1.25509 1.81650 1.35991 1.23036 0.86732 1.00635 0.96770 1.20538 0.96783 0.90021 0.94247 1.22367 0.99796 1.01392 0.93750 1.21941 0.95824 0.95991 0.98275 1.22472 1.00710 0.94523 1.01029 1.23207 0.95138 1.01488 0.87856 1.67379 1.11424 1.11318 1.29973 0.91721 0.93163 0.92196 0.93108 0.90930 0.88762 0.91895 0.74500 0.97494 0.93727 0.93593 0.94656 0.97656 0.91473 0.94741 0.87678 0.85107 0.83406 0.81844 0.80044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.11 -1.70 5.72 30.59 0.17 -1.52 16 3 C -0.10 -1.62 4.62 30.59 0.14 -1.48 16 4 C -0.05 -1.02 2.52 -12.29 -0.03 -1.05 16 5 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 6 C 0.52 14.79 6.94 87.66 0.61 15.40 16 7 O -0.57 -20.81 12.75 -3.05 -0.04 -20.84 16 8 N -0.70 -18.57 4.97 -436.90 -2.17 -20.75 16 9 C 0.16 5.71 3.05 46.19 0.14 5.85 16 10 H 0.08 3.40 7.55 -2.39 -0.02 3.38 16 11 C 0.13 5.73 7.00 86.73 0.61 6.34 16 12 N -0.62 -32.24 3.29 -691.97 -2.28 -34.51 16 13 C -0.35 -20.39 10.02 84.03 0.84 -19.55 16 14 H 0.06 3.63 7.97 -2.91 -0.02 3.60 16 15 C -0.07 -4.33 5.09 84.86 0.43 -3.90 16 16 N -0.94 -58.69 12.93 21.65 0.28 -58.41 16 17 Si 1.12 51.01 30.00 68.60 2.06 53.07 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.14 6.46 5.03 86.86 0.44 6.90 16 22 C 0.09 3.11 3.12 31.99 0.10 3.21 16 23 H 0.10 2.95 7.77 -2.39 -0.02 2.93 16 24 O -0.39 -12.79 10.52 -148.98 -1.57 -14.36 16 25 C 0.02 0.57 10.89 113.37 1.23 1.80 16 26 C 0.12 3.03 4.88 42.55 0.21 3.23 16 27 C -0.15 -4.00 8.27 22.36 0.18 -3.81 16 28 C -0.09 -1.96 10.18 22.47 0.23 -1.73 16 29 C -0.17 -2.80 10.11 22.36 0.23 -2.57 16 30 C 0.08 1.47 11.18 84.67 0.95 2.41 16 31 N -0.49 -11.43 9.63 -183.89 -1.77 -13.20 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.05 0.93 6.90 -2.39 -0.02 0.91 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.19 7.43 -2.39 -0.02 1.17 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.42 8.07 7.92 -92.71 -0.73 7.34 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 42 H 0.25 16.29 6.06 -92.71 -0.56 15.73 16 43 H 0.04 1.80 7.95 -2.39 -0.02 1.78 16 44 H 0.01 0.30 6.81 -2.38 -0.02 0.29 16 45 H 0.07 1.21 8.11 -2.38 -0.02 1.19 16 46 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.13 3.87 5.94 -2.91 -0.02 3.86 16 49 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 50 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 51 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -77.56 409.80 2.10 -75.46 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.39 Total: 25.14 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 7.19 Total: 8.40 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.94 Total: -126.87 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.61 Total: -35.20 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.07 kcal Total: -77.56 2.10 -75.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213335726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.967 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds