Wall clock time and date at job start Wed Apr 1 2020 04:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47327 * 106.05086 * 3 2 1 5 5 C 1.53002 * 109.47251 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47216 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00168 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99901 * 180.02562 * 6 5 4 9 9 C 1.47051 * 125.43081 * 179.71997 * 8 6 5 10 10 C 1.55171 * 105.80737 * 160.38137 * 9 8 6 11 11 H 1.09006 * 112.35532 * 151.42501 * 10 9 8 12 12 C 1.51026 * 107.04882 * 273.65990 * 10 9 8 13 13 C 1.52920 * 109.19504 * 164.83068 * 12 10 9 14 14 N 1.46492 * 108.67189 * 296.29083 * 13 12 10 15 15 C 1.46899 * 110.99850 * 186.81894 * 14 13 12 16 16 C 1.50695 * 109.47183 * 299.82769 * 15 14 13 17 17 O 1.21299 * 120.00009 * 354.20003 * 16 15 14 18 18 N 1.34780 * 120.00084 * 174.20417 * 16 15 14 19 19 C 1.37095 * 119.99771 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00268 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99511 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99830 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00376 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47253 * 90.00023 * 23 21 19 25 25 H 1.48497 * 109.47600 * 210.00505 * 23 21 19 26 26 H 1.48499 * 109.46875 * 330.00212 * 23 21 19 27 27 C 1.45307 * 112.74282 * 61.56633 * 14 13 12 28 28 C 1.50004 * 115.28311 * 310.77203 * 27 14 13 29 29 H 1.08996 * 108.18971 * 159.11923 * 28 27 14 30 30 C 1.47083 * 125.43640 * 0.02562 * 8 6 5 31 31 H 4.44650 * 5.63371 * 180.02562 * 4 1 2 32 32 H 1.09000 * 109.46760 * 226.04935 * 3 2 1 33 33 H 1.09001 * 109.47084 * 346.04753 * 3 2 1 34 34 H 1.09000 * 109.47077 * 299.99655 * 4 3 2 35 35 H 1.09001 * 109.47311 * 59.99805 * 4 3 2 36 36 H 1.09000 * 109.47164 * 300.00049 * 5 4 3 37 37 H 1.09001 * 109.46756 * 59.99914 * 5 4 3 38 38 H 1.08991 * 110.16050 * 279.61896 * 9 8 6 39 39 H 1.08998 * 110.15955 * 41.39563 * 9 8 6 40 40 H 1.09002 * 109.44628 * 45.01270 * 12 10 9 41 41 H 1.08997 * 109.75838 * 284.84752 * 12 10 9 42 42 H 1.09006 * 109.59967 * 176.53469 * 13 12 10 43 43 H 1.08997 * 109.73633 * 56.13171 * 13 12 10 44 44 H 1.09002 * 109.47202 * 59.83094 * 15 14 13 45 45 H 1.09005 * 109.47035 * 179.82718 * 15 14 13 46 46 H 0.97000 * 119.99804 * 0.02562 * 18 16 15 47 47 H 0.97004 * 120.00253 * 179.97438 * 22 21 19 48 48 H 1.09000 * 108.32214 * 189.26433 * 27 14 13 49 49 H 1.08998 * 108.17648 * 72.17155 * 27 14 13 50 50 H 1.09001 * 109.95902 * 298.96079 * 30 8 6 51 51 H 1.09001 * 109.95458 * 60.15278 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.3997 -1.3862 5 6 4.6859 0.4010 -1.3860 6 6 5.1881 0.7934 -2.7516 7 8 4.3999 1.0476 -3.6376 8 7 6.5132 0.8620 -2.9882 9 6 7.1323 1.2249 -4.2717 10 6 8.5852 1.6525 -3.9343 11 1 9.2736 1.4693 -4.7594 12 6 8.5433 3.1192 -3.5765 13 6 9.8487 3.5041 -2.8792 14 7 9.9449 2.7608 -1.6205 15 6 11.0993 3.2099 -0.8308 16 6 12.3644 2.9857 -1.6183 17 8 12.3216 2.4045 -2.6821 18 7 13.5434 3.4309 -1.1405 19 6 14.6944 3.2264 -1.8567 20 1 14.6564 2.7083 -2.8036 21 6 15.9100 3.6849 -1.3639 22 7 17.0132 3.4894 -2.0505 23 14 15.9758 4.5804 0.2741 24 1 16.1861 3.5978 1.3675 25 1 17.0968 5.5542 0.2613 26 1 14.6966 5.3013 0.4958 27 6 9.9778 1.3218 -1.8191 28 6 8.9127 0.7752 -2.7229 29 1 9.2432 -0.1968 -3.0892 30 6 7.5707 0.5797 -2.0057 31 1 -1.0500 0.0002 0.0001 32 1 3.0090 0.7141 0.7399 33 1 3.0098 -0.9965 0.2478 34 1 2.7929 -0.3137 -2.1260 35 1 2.7921 1.3969 -1.6340 36 1 5.0486 1.1146 -0.6462 37 1 5.0500 -0.5960 -1.1380 38 1 7.1367 0.3660 -4.9428 39 1 6.5933 2.0556 -4.7272 40 1 7.7044 3.3053 -2.9058 41 1 8.4247 3.7159 -4.4809 42 1 9.8512 4.5745 -2.6730 43 1 10.6952 3.2528 -3.5180 44 1 10.9947 4.2713 -0.6057 45 1 11.1453 2.6440 0.0996 46 1 13.5777 3.8952 -0.2896 47 1 17.8618 3.8097 -1.7067 48 1 9.8824 0.8394 -0.8463 49 1 10.9497 1.0583 -2.2363 50 1 7.4931 1.2711 -1.1665 51 1 7.4840 -0.4472 -1.6506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264086797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:42 Heat of formation + Delta-G solvation = -14.898194 kcal Electronic energy + Delta-G solvation = -30552.765894 eV Core-core repulsion = 26453.273080 eV Total energy + Delta-G solvation = -4099.492814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85885 -39.45550 -38.26984 -36.10044 -35.74165 -34.01438 -32.99757 -32.38836 -31.81947 -31.63391 -29.22104 -27.84721 -27.04169 -25.21464 -23.98404 -22.77611 -22.45404 -21.62674 -19.58899 -19.43345 -18.89730 -18.43380 -18.24864 -17.06358 -16.67757 -16.12109 -15.96809 -15.58959 -15.30964 -14.96332 -14.73117 -14.40329 -14.28170 -14.13770 -13.83876 -13.69924 -13.33819 -13.16895 -13.03907 -12.89020 -12.68555 -12.57316 -12.33430 -12.11660 -11.94093 -11.82203 -11.65201 -11.44645 -11.35856 -11.30970 -10.82216 -10.72919 -10.65596 -10.54046 -10.41030 -10.26711 -10.20596 -10.08866 -9.94939 -9.58648 -9.32781 -8.73482 -8.26975 -7.51074 -6.41510 -3.92961 2.46980 2.49540 2.53576 2.87255 2.95619 2.99941 3.09084 3.58267 4.01051 4.01496 4.09664 4.28828 4.41145 4.57203 4.60846 4.64569 4.72811 4.75742 5.04399 5.08979 5.10222 5.13638 5.21319 5.24190 5.28300 5.36222 5.45107 5.48722 5.56359 5.64075 5.71325 5.73116 5.77165 5.78711 5.82787 5.86472 5.90317 5.93122 5.94619 6.02813 6.18117 6.22876 6.29718 6.43456 6.62973 7.23898 7.31209 7.37896 7.42687 7.46540 8.02210 8.04490 8.47143 8.83945 9.31800 9.69570 10.71185 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.001920 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.298950 B =14579.254248 C =15383.595055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C -0.014 4.014 4 C -0.099 4.099 5 C -0.137 4.137 6 C 0.527 3.473 7 O -0.547 6.547 8 N -0.614 5.614 9 C 0.109 3.891 10 C -0.089 4.089 11 H 0.096 0.904 12 C -0.105 4.105 13 C 0.042 3.958 14 N -0.517 5.517 15 C 0.043 3.957 16 C 0.414 3.586 17 O -0.576 6.576 18 N -0.583 5.583 19 C -0.309 4.309 20 H 0.119 0.881 21 C 0.043 3.957 22 N -0.877 5.877 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.268 1.268 27 C 0.052 3.948 28 C -0.081 4.081 29 H 0.078 0.922 30 C 0.107 3.893 31 H 0.216 0.784 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.394 -5.030 5.830 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.424 6.424 8 N -0.348 5.348 9 C -0.013 4.013 10 C -0.108 4.108 11 H 0.114 0.886 12 C -0.143 4.143 13 C -0.086 4.086 14 N -0.240 5.240 15 C -0.089 4.089 16 C 0.200 3.800 17 O -0.462 6.462 18 N -0.221 5.221 19 C -0.438 4.438 20 H 0.136 0.864 21 C -0.161 4.161 22 N -0.517 5.517 23 Si 0.706 3.294 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.076 4.076 28 C -0.100 4.100 29 H 0.096 0.904 30 C -0.015 4.015 31 H 0.233 0.767 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.204 0.796 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.094 -5.177 4.896 25.126 hybrid contribution 0.996 0.542 0.926 1.463 sum -23.099 -4.635 5.822 24.268 Atomic orbital electron populations 1.24918 0.96019 1.01302 1.00796 1.23113 0.94588 1.00286 1.00446 1.18774 0.84855 1.03041 0.98408 1.21280 0.92992 1.03642 0.95777 1.21655 0.97116 1.03868 0.94991 1.20320 0.80456 0.77195 0.90441 1.90707 1.54435 1.50207 1.47086 1.48422 1.05100 1.68081 1.13187 1.22308 0.93069 1.00185 0.85760 1.21649 0.94908 0.96115 0.98153 0.88591 1.21226 0.98478 0.94538 1.00079 1.22158 0.97954 0.97235 0.91209 1.61299 1.38183 1.04872 1.19674 1.22043 0.87764 1.02080 0.97031 1.21058 0.85245 0.85099 0.88614 1.90458 1.85851 1.45948 1.23896 1.42419 1.07515 1.51426 1.20693 1.19444 0.82704 1.35873 1.05760 0.86357 1.25080 0.95107 0.97648 0.98218 1.69624 0.98557 1.45387 1.38104 0.86666 0.78556 0.80286 0.83870 1.19548 1.20110 1.19379 1.21116 0.99347 0.88424 0.98762 1.20970 0.93853 0.99813 0.95365 0.90401 1.22095 0.86455 1.00594 0.92395 0.76716 0.89348 0.89433 0.90809 0.90733 0.88492 0.88732 0.91927 0.90557 0.91567 0.91609 0.91661 0.90701 0.89223 0.89175 0.79586 0.91499 0.91707 0.90471 0.90366 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.18 -1.61 13.34 -37.12 -0.50 -2.10 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.80 4.46 -26.73 -0.12 -0.92 16 5 C -0.14 -1.01 4.88 -27.88 -0.14 -1.15 16 6 C 0.53 6.02 7.84 -10.99 -0.09 5.94 16 7 O -0.55 -8.32 16.27 5.55 0.09 -8.23 16 8 N -0.61 -6.58 3.27 -171.17 -0.56 -7.14 16 9 C 0.11 1.21 6.15 -2.59 -0.02 1.20 16 10 C -0.09 -1.02 3.33 -90.40 -0.30 -1.32 16 11 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.11 -1.28 5.03 -27.76 -0.14 -1.42 16 13 C 0.04 0.61 4.99 -4.09 -0.02 0.59 16 14 N -0.52 -7.25 4.79 -239.69 -1.15 -8.40 16 15 C 0.04 0.64 5.81 -4.98 -0.03 0.61 16 16 C 0.41 8.47 7.11 -10.99 -0.08 8.39 16 17 O -0.58 -13.62 11.36 5.54 0.06 -13.56 16 18 N -0.58 -12.98 5.09 -10.96 -0.06 -13.03 16 19 C -0.31 -8.33 10.16 -14.93 -0.15 -8.48 16 20 H 0.12 3.67 7.39 -52.49 -0.39 3.29 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -24.86 13.96 55.50 0.77 -24.08 16 23 Si 0.88 18.61 27.74 -169.99 -4.71 13.89 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 27 C 0.05 0.69 4.56 -6.17 -0.03 0.66 16 28 C -0.08 -0.89 2.72 -91.83 -0.25 -1.14 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 C 0.11 0.99 5.88 -3.51 -0.02 0.97 16 31 H 0.22 1.00 7.80 -54.09 -0.42 0.58 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 40 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 43 H 0.07 1.36 5.77 -51.93 -0.30 1.06 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 46 H 0.37 7.28 5.76 -40.82 -0.24 7.05 16 47 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.06 0.76 8.00 -51.93 -0.42 0.35 16 49 H 0.08 1.34 5.42 -51.93 -0.28 1.06 16 50 H 0.08 0.72 7.93 -51.93 -0.41 0.30 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -32.96 405.83 -9.35 -42.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.35 Total: 10.66 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.57 Total: 1.47 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.99 Total: -52.66 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.15 Total: -21.79 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.96 -9.35 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264086797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.413 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds