Wall clock time and date at job start Wed Apr 1 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47327 * 106.05086 * 3 2 1 5 5 C 1.53002 * 109.47251 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47216 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00168 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99901 * 180.02562 * 6 5 4 9 9 C 1.47051 * 125.43081 * 179.71997 * 8 6 5 10 10 C 1.55171 * 105.80737 * 160.38137 * 9 8 6 11 11 H 1.09006 * 112.35532 * 151.42501 * 10 9 8 12 12 C 1.51026 * 107.04882 * 273.65990 * 10 9 8 13 13 C 1.52920 * 109.19504 * 164.83068 * 12 10 9 14 14 N 1.46492 * 108.67189 * 296.29083 * 13 12 10 15 15 C 1.46899 * 110.99850 * 186.81894 * 14 13 12 16 16 C 1.50695 * 109.47183 * 299.82769 * 15 14 13 17 17 O 1.21299 * 120.00009 * 354.20003 * 16 15 14 18 18 N 1.34780 * 120.00084 * 174.20417 * 16 15 14 19 19 C 1.37095 * 119.99771 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00268 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99511 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99830 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00376 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47253 * 90.00023 * 23 21 19 25 25 H 1.48497 * 109.47600 * 210.00505 * 23 21 19 26 26 H 1.48499 * 109.46875 * 330.00212 * 23 21 19 27 27 C 1.45307 * 112.74282 * 61.56633 * 14 13 12 28 28 C 1.50004 * 115.28311 * 310.77203 * 27 14 13 29 29 H 1.08996 * 108.18971 * 159.11923 * 28 27 14 30 30 C 1.47083 * 125.43640 * 0.02562 * 8 6 5 31 31 H 4.44650 * 5.63371 * 180.02562 * 4 1 2 32 32 H 1.09000 * 109.46760 * 226.04935 * 3 2 1 33 33 H 1.09001 * 109.47084 * 346.04753 * 3 2 1 34 34 H 1.09000 * 109.47077 * 299.99655 * 4 3 2 35 35 H 1.09001 * 109.47311 * 59.99805 * 4 3 2 36 36 H 1.09000 * 109.47164 * 300.00049 * 5 4 3 37 37 H 1.09001 * 109.46756 * 59.99914 * 5 4 3 38 38 H 1.08991 * 110.16050 * 279.61896 * 9 8 6 39 39 H 1.08998 * 110.15955 * 41.39563 * 9 8 6 40 40 H 1.09002 * 109.44628 * 45.01270 * 12 10 9 41 41 H 1.08997 * 109.75838 * 284.84752 * 12 10 9 42 42 H 1.09006 * 109.59967 * 176.53469 * 13 12 10 43 43 H 1.08997 * 109.73633 * 56.13171 * 13 12 10 44 44 H 1.09002 * 109.47202 * 59.83094 * 15 14 13 45 45 H 1.09005 * 109.47035 * 179.82718 * 15 14 13 46 46 H 0.97000 * 119.99804 * 0.02562 * 18 16 15 47 47 H 0.97004 * 120.00253 * 179.97438 * 22 21 19 48 48 H 1.09000 * 108.32214 * 189.26433 * 27 14 13 49 49 H 1.08998 * 108.17648 * 72.17155 * 27 14 13 50 50 H 1.09001 * 109.95902 * 298.96079 * 30 8 6 51 51 H 1.09001 * 109.95458 * 60.15278 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.3997 -1.3862 5 6 4.6859 0.4010 -1.3860 6 6 5.1881 0.7934 -2.7516 7 8 4.3999 1.0476 -3.6376 8 7 6.5132 0.8620 -2.9882 9 6 7.1323 1.2249 -4.2717 10 6 8.5852 1.6525 -3.9343 11 1 9.2736 1.4693 -4.7594 12 6 8.5433 3.1192 -3.5765 13 6 9.8487 3.5041 -2.8792 14 7 9.9449 2.7608 -1.6205 15 6 11.0993 3.2099 -0.8308 16 6 12.3644 2.9857 -1.6183 17 8 12.3216 2.4045 -2.6821 18 7 13.5434 3.4309 -1.1405 19 6 14.6944 3.2264 -1.8567 20 1 14.6564 2.7083 -2.8036 21 6 15.9100 3.6849 -1.3639 22 7 17.0132 3.4894 -2.0505 23 14 15.9758 4.5804 0.2741 24 1 16.1861 3.5978 1.3675 25 1 17.0968 5.5542 0.2613 26 1 14.6966 5.3013 0.4958 27 6 9.9778 1.3218 -1.8191 28 6 8.9127 0.7752 -2.7229 29 1 9.2432 -0.1968 -3.0892 30 6 7.5707 0.5797 -2.0057 31 1 -1.0500 0.0002 0.0001 32 1 3.0090 0.7141 0.7399 33 1 3.0098 -0.9965 0.2478 34 1 2.7929 -0.3137 -2.1260 35 1 2.7921 1.3969 -1.6340 36 1 5.0486 1.1146 -0.6462 37 1 5.0500 -0.5960 -1.1380 38 1 7.1367 0.3660 -4.9428 39 1 6.5933 2.0556 -4.7272 40 1 7.7044 3.3053 -2.9058 41 1 8.4247 3.7159 -4.4809 42 1 9.8512 4.5745 -2.6730 43 1 10.6952 3.2528 -3.5180 44 1 10.9947 4.2713 -0.6057 45 1 11.1453 2.6440 0.0996 46 1 13.5777 3.8952 -0.2896 47 1 17.8618 3.8097 -1.7067 48 1 9.8824 0.8394 -0.8463 49 1 10.9497 1.0583 -2.2363 50 1 7.4931 1.2711 -1.1665 51 1 7.4840 -0.4472 -1.6506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264086797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:41 Heat of formation + Delta-G solvation = -38.045767 kcal Electronic energy + Delta-G solvation = -30553.769648 eV Core-core repulsion = 26453.273080 eV Total energy + Delta-G solvation = -4100.496568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.85400 -40.70903 -39.52058 -37.23485 -36.44252 -35.80807 -33.98935 -33.72851 -33.07769 -32.65819 -30.20704 -28.69597 -28.15617 -26.55325 -25.30024 -23.68430 -23.45893 -22.49508 -21.29029 -20.49274 -20.13934 -19.64144 -19.01073 -17.93379 -17.70157 -17.52728 -16.97134 -16.64425 -16.47477 -16.23365 -15.84550 -15.61699 -15.42762 -15.09809 -14.98172 -14.75439 -14.66786 -14.41317 -14.02075 -13.91354 -13.69045 -13.62172 -13.36755 -13.20320 -13.06922 -12.94839 -12.72512 -12.51183 -12.44738 -12.41070 -12.05441 -11.97896 -11.91348 -11.72125 -11.39055 -11.24330 -11.19420 -11.14866 -10.94500 -10.94239 -10.83743 -10.19865 -9.60048 -8.90597 -8.41547 -6.01591 1.31242 1.35784 1.45087 1.66121 1.84391 1.95141 1.95251 2.09316 2.23267 2.96700 3.02831 3.16489 3.39293 3.52394 3.55658 3.74250 3.79199 4.10039 4.15872 4.18884 4.23171 4.26267 4.35205 4.43907 4.50846 4.58481 4.59991 4.65094 4.67527 4.70336 4.71676 4.77020 4.83917 4.89042 4.94354 5.00211 5.03776 5.11518 5.21979 5.22928 5.23489 5.26014 5.32607 5.39234 5.48090 5.53911 5.93972 6.08798 6.24596 6.56114 6.58871 6.74667 6.89625 7.17765 7.41175 7.97497 8.75984 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.001920 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.298950 B =14579.254248 C =15383.595055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.215 4.215 3 C -0.010 4.010 4 C -0.093 4.093 5 C -0.127 4.127 6 C 0.520 3.480 7 O -0.594 6.594 8 N -0.614 5.614 9 C 0.114 3.886 10 C -0.089 4.089 11 H 0.082 0.918 12 C -0.095 4.095 13 C 0.044 3.956 14 N -0.502 5.502 15 C 0.050 3.950 16 C 0.418 3.582 17 O -0.611 6.611 18 N -0.590 5.590 19 C -0.326 4.326 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.257 1.257 25 H -0.279 1.279 26 H -0.229 1.229 27 C 0.055 3.945 28 C -0.081 4.081 29 H 0.080 0.920 30 C 0.115 3.885 31 H 0.238 0.762 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.092 0.908 49 H 0.032 0.968 50 H 0.090 0.910 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.560 -4.674 10.026 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.215 4.215 3 C -0.047 4.047 4 C -0.131 4.131 5 C -0.166 4.166 6 C 0.311 3.689 7 O -0.475 6.475 8 N -0.346 5.346 9 C -0.009 4.009 10 C -0.109 4.109 11 H 0.100 0.900 12 C -0.133 4.133 13 C -0.084 4.084 14 N -0.224 5.224 15 C -0.081 4.081 16 C 0.205 3.795 17 O -0.497 6.497 18 N -0.231 5.231 19 C -0.456 4.456 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.784 3.216 24 H -0.181 1.181 25 H -0.204 1.204 26 H -0.153 1.153 27 C -0.073 4.073 28 C -0.100 4.100 29 H 0.098 0.902 30 C -0.007 4.007 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.225 0.775 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.051 0.949 50 H 0.109 0.891 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.287 -4.834 9.105 28.236 hybrid contribution 1.589 0.346 -0.571 1.724 sum -24.698 -4.488 8.534 26.513 Atomic orbital electron populations 1.25706 0.97121 1.00949 1.00218 1.23851 0.95863 1.00779 1.01035 1.18850 0.83696 1.04592 0.97535 1.21166 0.93740 1.01823 0.96374 1.21693 0.96191 1.05977 0.92710 1.21092 0.80056 0.76231 0.91507 1.90691 1.55543 1.52374 1.48909 1.48506 1.05421 1.67576 1.13145 1.22176 0.92452 0.99875 0.86445 1.21585 0.94994 0.96016 0.98273 0.89981 1.21133 0.97117 0.94924 1.00096 1.22093 0.97529 0.97763 0.91053 1.61424 1.36868 1.05164 1.18969 1.22264 0.84137 1.04544 0.97186 1.22410 0.86476 0.82420 0.88163 1.90485 1.86712 1.46657 1.25887 1.42272 1.06561 1.52935 1.21322 1.18993 0.85378 1.36636 1.04580 0.92827 1.26127 0.93799 0.98249 1.03238 1.69812 0.99547 1.47295 1.40988 0.85380 0.80105 0.78867 0.77271 1.18110 1.20439 1.15250 1.21113 0.97833 0.88127 1.00248 1.20925 0.94694 0.99492 0.94920 0.90155 1.22134 0.84239 1.02679 0.91662 0.74515 0.87589 0.87511 0.92813 0.92912 0.86048 0.85888 0.91829 0.91642 0.90964 0.91248 0.91016 0.94989 0.86440 0.85657 0.77532 0.91265 0.89025 0.94947 0.89138 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.28 19.25 74.32 1.43 -1.85 16 2 C -0.22 -3.45 13.34 31.13 0.42 -3.04 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.09 -1.35 4.46 30.59 0.14 -1.22 16 5 C -0.13 -1.45 4.88 29.85 0.15 -1.30 16 6 C 0.52 10.89 7.84 87.66 0.69 11.58 16 7 O -0.59 -17.98 16.27 -3.04 -0.05 -18.03 16 8 N -0.61 -11.73 3.27 -813.83 -2.66 -14.39 16 9 C 0.11 2.44 6.15 87.02 0.54 2.98 16 10 C -0.09 -2.01 3.33 -10.65 -0.04 -2.05 16 11 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 12 C -0.09 -2.22 5.03 29.92 0.15 -2.06 16 13 C 0.04 1.24 4.99 86.35 0.43 1.67 16 14 N -0.50 -12.77 4.79 -912.26 -4.37 -17.14 16 15 C 0.05 1.33 5.81 85.56 0.50 1.83 16 16 C 0.42 16.95 7.11 87.65 0.62 17.57 16 17 O -0.61 -30.20 11.36 -3.09 -0.04 -30.23 16 18 N -0.59 -26.00 5.09 -306.98 -1.56 -27.56 16 19 C -0.33 -18.38 10.16 84.04 0.85 -17.53 16 20 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.94 -55.43 13.96 21.66 0.30 -55.13 16 23 Si 0.96 37.45 27.74 68.60 1.90 39.36 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 25 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 27 C 0.05 1.36 4.56 85.64 0.39 1.75 16 28 C -0.08 -1.65 2.72 -11.58 -0.03 -1.68 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 C 0.11 1.67 5.88 86.41 0.51 2.18 16 31 H 0.24 1.85 7.80 -4.42 -0.03 1.82 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.12 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.56 7.79 -2.39 -0.02 1.54 16 40 H 0.07 1.63 7.88 -2.39 -0.02 1.61 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.93 8.12 -2.38 -0.02 1.91 16 43 H 0.03 1.21 5.77 -2.39 -0.01 1.19 16 44 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.13 2.57 8.12 -2.38 -0.02 2.55 16 46 H 0.39 14.14 5.76 -92.71 -0.53 13.61 16 47 H 0.28 15.10 8.31 -92.70 -0.77 14.32 16 48 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 49 H 0.03 1.13 5.42 -2.39 -0.01 1.11 16 50 H 0.09 1.17 7.93 -2.39 -0.02 1.16 16 51 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -80.44 405.83 1.22 -79.22 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.33 Total: 35.39 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 7.37 Total: 8.51 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -8.30 Total: -114.22 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.08 Total: -48.26 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.36 kcal Total: -80.44 1.22 -79.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264086797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.173 kcal (2) G-P(sol) polarization free energy of solvation -80.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds