Wall clock time and date at job start Wed Apr 1 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21290 * 119.99839 * 2 1 4 4 N 1.34771 * 120.00248 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00313 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46887 * 34.99776 * 5 4 2 7 7 C 1.50703 * 109.47420 * 155.00015 * 5 4 2 8 8 O 1.21282 * 119.99623 * 28.95388 * 7 5 4 9 9 N 1.34771 * 120.00171 * 208.68813 * 7 5 4 10 10 C 1.46498 * 120.00340 * 175.20219 * 9 7 5 11 11 C 1.50693 * 109.47423 * 179.97438 * 10 9 7 12 12 C 1.38237 * 119.99745 * 269.72531 * 11 10 9 13 13 C 1.38236 * 120.00084 * 179.76726 * 12 11 10 14 14 C 1.38236 * 119.99708 * 0.47880 * 13 12 11 15 15 C 1.50707 * 120.00157 * 179.76798 * 14 13 12 16 16 N 1.46498 * 109.47363 * 270.02820 * 15 14 13 17 17 C 1.36936 * 119.99960 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99882 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99626 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99704 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00209 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47002 * 90.00190 * 21 19 17 23 23 H 1.48500 * 109.47088 * 209.99888 * 21 19 17 24 24 H 1.48493 * 109.47501 * 329.99987 * 21 19 17 25 25 C 1.38233 * 120.00363 * 359.79431 * 14 13 12 26 26 C 1.38235 * 120.00418 * 89.99149 * 11 10 9 27 27 C 1.52994 * 109.47124 * 275.00185 * 5 4 2 28 28 C 1.52996 * 109.47258 * 63.92031 * 27 5 4 29 29 C 1.53000 * 109.47168 * 183.91981 * 27 5 4 30 30 H 1.09001 * 109.46828 * 240.00189 * 1 2 3 31 31 H 1.09002 * 109.46837 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47223 * 120.00084 * 1 2 3 33 33 H 0.97002 * 119.99629 * 359.97438 * 4 2 1 34 34 H 0.97002 * 120.00077 * 355.19060 * 9 7 5 35 35 H 1.09004 * 109.46549 * 299.99357 * 10 9 7 36 36 H 1.09000 * 109.47431 * 59.99066 * 10 9 7 37 37 H 1.07996 * 119.99794 * 359.97438 * 12 11 10 38 38 H 1.07996 * 120.00474 * 180.25109 * 13 12 11 39 39 H 1.09004 * 109.46624 * 30.02545 * 15 14 13 40 40 H 1.09000 * 109.47323 * 150.02171 * 15 14 13 41 41 H 0.97002 * 119.99582 * 359.97438 * 16 15 14 42 42 H 0.97000 * 119.99992 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.00577 * 179.97438 * 25 14 13 44 44 H 1.07999 * 119.99932 * 0.02562 * 26 11 10 45 45 H 1.09002 * 109.47381 * 303.91912 * 27 5 4 46 46 H 1.08995 * 109.47613 * 59.99944 * 28 27 5 47 47 H 1.09004 * 109.47488 * 179.97438 * 28 27 5 48 48 H 1.09004 * 109.47293 * 299.99568 * 28 27 5 49 49 H 1.09000 * 109.47339 * 57.08195 * 29 27 5 50 50 H 1.09005 * 109.46969 * 177.08123 * 29 27 5 51 51 H 1.09001 * 109.46976 * 297.08344 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0095 -0.3249 0.5887 7 6 4.1486 -2.4544 0.6011 8 8 3.4842 -3.4652 0.5123 9 7 5.3388 -2.4837 1.2327 10 6 5.7800 -3.7067 1.9077 11 6 7.1333 -3.4771 2.5295 12 6 8.2806 -3.7449 1.8063 13 6 9.5221 -3.5297 2.3749 14 6 9.6163 -3.0561 3.6702 15 6 10.9698 -2.8264 4.2920 16 7 11.4110 -4.0494 4.9671 17 6 12.6203 -4.0791 5.6088 18 1 13.2490 -3.2010 5.6169 19 6 13.0381 -5.2378 6.2489 20 7 14.2007 -5.2665 6.8653 21 14 11.9503 -6.7563 6.2355 22 1 12.2779 -7.5894 5.0505 23 1 12.1833 -7.5430 7.4732 24 1 10.5252 -6.3439 6.1720 25 6 8.4691 -2.7937 4.3954 26 6 7.2276 -3.0039 3.8249 27 6 4.1554 -1.0423 -1.4373 28 6 3.7273 0.3083 -2.0146 29 6 5.6822 -1.1405 -1.4475 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 1.6959 -2.0072 0.0013 34 1 5.9034 -1.6950 1.2402 35 1 5.0630 -3.9716 2.6849 36 1 5.8464 -4.5181 1.1829 37 1 8.2069 -4.1190 0.7959 38 1 10.4184 -3.7350 1.8086 39 1 11.6865 -2.5617 3.5146 40 1 10.9037 -2.0149 5.0168 41 1 10.8461 -4.8380 4.9601 42 1 14.4928 -6.0763 7.3122 43 1 8.5427 -2.4240 5.4075 44 1 6.3313 -2.7992 4.3916 45 1 3.7356 -1.8457 -2.0427 46 1 4.1470 1.1117 -1.4094 47 1 4.0906 0.3974 -3.0385 48 1 2.6395 0.3782 -2.0074 49 1 5.9890 -2.0805 -0.9889 50 1 6.0417 -1.1036 -2.4759 51 1 6.1036 -0.3073 -0.8851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270081477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:35 Heat of formation + Delta-G solvation = -45.323939 kcal Electronic energy + Delta-G solvation = -29797.974087 eV Core-core repulsion = 25697.161913 eV Total energy + Delta-G solvation = -4100.812173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11270 -39.78197 -39.17330 -36.45548 -35.82234 -34.62600 -33.83891 -32.20300 -30.90095 -30.75543 -30.42978 -28.30199 -27.25271 -26.53126 -24.40019 -22.67360 -22.13901 -21.52240 -21.11803 -20.73861 -20.44185 -18.33701 -17.85724 -17.30060 -16.62237 -16.39408 -16.10219 -15.76066 -15.50780 -15.06860 -14.97677 -14.66850 -14.52465 -14.18713 -13.93871 -13.71102 -13.39930 -13.25105 -13.23272 -13.03747 -12.97072 -12.88448 -12.67033 -12.50343 -12.39436 -12.26319 -12.07361 -11.96242 -11.53628 -11.48891 -11.25233 -11.00569 -10.85324 -10.69280 -10.37359 -10.32185 -10.18146 -9.64330 -9.57278 -9.44459 -8.96600 -8.87321 -8.63910 -7.29645 -5.81279 -3.17738 1.18973 1.45580 2.02200 2.20427 2.50326 3.05462 3.35289 3.39231 3.43050 3.80503 4.14814 4.28309 4.39011 4.45104 4.49725 4.55756 4.74176 4.77667 4.79501 4.89313 4.91193 5.01129 5.13822 5.16774 5.17656 5.30389 5.36057 5.38084 5.46637 5.48334 5.51329 5.55446 5.66099 5.67419 5.68651 5.78056 5.88254 5.94289 5.99903 6.00046 6.03057 6.32169 6.43872 6.46513 6.51141 6.92259 7.00801 7.02250 7.04914 7.68840 7.75341 7.93515 8.37309 9.15632 9.87836 10.07461 11.36742 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.001786 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.832240 B =15671.024075 C =15912.571536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.513 3.487 3 O -0.539 6.539 4 N -0.716 5.716 5 C 0.132 3.868 6 H 0.109 0.891 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.717 5.717 10 C 0.165 3.835 11 C -0.125 4.125 12 C -0.103 4.103 13 C -0.107 4.107 14 C -0.069 4.069 15 C 0.189 3.811 16 N -0.750 5.750 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.107 4.107 26 C -0.103 4.103 27 C -0.098 4.098 28 C -0.137 4.137 29 C -0.159 4.159 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.410 0.590 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.810 9.678 -18.133 34.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.300 3.700 3 O -0.415 6.415 4 N -0.371 5.371 5 C 0.023 3.977 6 H 0.127 0.873 7 C 0.300 3.700 8 O -0.415 6.415 9 N -0.369 5.369 10 C 0.042 3.958 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.126 4.126 14 C -0.070 4.070 15 C 0.062 3.938 16 N -0.396 5.396 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.194 4.194 29 C -0.217 4.217 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.247 0.753 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.635 9.773 -18.060 34.429 hybrid contribution -0.540 -1.353 0.189 1.469 sum -28.175 8.421 -17.871 34.411 Atomic orbital electron populations 1.21920 0.91224 1.05700 1.04512 1.20811 0.90709 0.83214 0.75262 1.90753 1.70600 1.31268 1.48912 1.45840 1.05582 1.09820 1.75809 1.20940 0.82164 0.96559 0.98052 0.87339 1.20539 0.81410 0.90208 0.77859 1.90710 1.57027 1.35092 1.58638 1.46215 1.19775 1.16371 1.54567 1.20202 0.92483 0.86737 0.96335 1.19676 0.93924 1.03790 0.95216 1.21010 0.91944 0.99670 0.99491 1.21173 0.97547 0.98641 0.95239 1.20459 0.96454 0.96183 0.93901 1.19680 0.88728 0.90589 0.94792 1.42679 1.21381 1.10179 1.65344 1.19056 0.93373 0.99356 1.25948 0.89072 1.24658 0.96748 0.97625 0.99869 1.69702 1.20226 1.28190 1.39837 0.86560 0.80496 0.84215 0.77374 1.20992 1.21627 1.20296 1.21173 0.91696 0.99727 0.99961 1.21016 0.97685 0.98982 0.94481 1.21448 0.96662 0.99941 0.93788 1.21859 1.01750 0.95598 1.00219 1.22006 0.94035 1.02459 1.03167 0.89229 0.88734 0.89268 0.75295 0.75894 0.90612 0.90444 0.86170 0.85553 0.94465 0.94529 0.80453 0.92978 0.85595 0.86215 0.90377 0.91693 0.92913 0.92494 0.91956 0.91547 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.32 36.01 0.37 -0.30 16 2 C 0.51 3.83 6.46 -10.99 -0.07 3.76 16 3 O -0.54 -5.88 14.22 5.55 0.08 -5.80 16 4 N -0.72 -4.98 5.00 -54.93 -0.27 -5.26 16 5 C 0.13 1.00 2.24 -69.08 -0.15 0.84 16 6 H 0.11 0.87 7.58 -51.93 -0.39 0.47 16 7 C 0.51 4.58 6.05 -10.99 -0.07 4.52 16 8 O -0.54 -6.33 16.09 5.56 0.09 -6.24 16 9 N -0.72 -5.66 4.44 -61.47 -0.27 -5.93 16 10 C 0.16 1.51 5.81 -5.20 -0.03 1.48 16 11 C -0.13 -1.32 5.25 -104.63 -0.55 -1.87 16 12 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 13 C -0.11 -1.46 9.70 -39.58 -0.38 -1.85 16 14 C -0.07 -1.07 5.25 -104.62 -0.55 -1.62 16 15 C 0.19 3.56 6.38 -5.19 -0.03 3.52 16 16 N -0.75 -17.70 5.40 -61.08 -0.33 -18.03 16 17 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 21 Si 0.88 22.15 27.73 -169.99 -4.71 17.44 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.60 6.52 56.52 0.37 -6.24 16 25 C -0.11 -1.48 9.70 -39.58 -0.38 -1.86 16 26 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 27 C -0.10 -0.69 2.70 -90.62 -0.24 -0.93 16 28 C -0.14 -1.04 7.77 37.16 0.29 -0.75 16 29 C -0.16 -0.99 8.48 37.16 0.32 -0.67 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.41 2.52 7.83 -40.82 -0.32 2.20 16 34 H 0.41 2.67 7.99 -40.82 -0.33 2.35 16 35 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.36 8.51 5.52 -40.82 -0.23 8.29 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 43 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.56 7.78 -51.93 -0.40 0.16 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.48 5.67 -51.93 -0.29 0.18 16 49 H 0.06 0.42 6.19 -51.93 -0.32 0.09 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 415.56 15.07 6.26 6.26 Total: -1.00 -34.41 415.56 -9.10 -43.51 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.20 Total: 8.23 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.51 Total: -5.84 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.10 Total: -57.56 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.17 Total: -12.04 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.41 -9.10 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270081477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.814 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds