Wall clock time and date at job start Wed Apr 1 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21290 * 119.99839 * 2 1 4 4 N 1.34771 * 120.00248 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00313 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46887 * 34.99776 * 5 4 2 7 7 C 1.50703 * 109.47420 * 155.00015 * 5 4 2 8 8 O 1.21282 * 119.99623 * 28.95388 * 7 5 4 9 9 N 1.34771 * 120.00171 * 208.68813 * 7 5 4 10 10 C 1.46498 * 120.00340 * 175.20219 * 9 7 5 11 11 C 1.50693 * 109.47423 * 179.97438 * 10 9 7 12 12 C 1.38237 * 119.99745 * 269.72531 * 11 10 9 13 13 C 1.38236 * 120.00084 * 179.76726 * 12 11 10 14 14 C 1.38236 * 119.99708 * 0.47880 * 13 12 11 15 15 C 1.50707 * 120.00157 * 179.76798 * 14 13 12 16 16 N 1.46498 * 109.47363 * 270.02820 * 15 14 13 17 17 C 1.36936 * 119.99960 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99882 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99626 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99704 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00209 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47002 * 90.00190 * 21 19 17 23 23 H 1.48500 * 109.47088 * 209.99888 * 21 19 17 24 24 H 1.48493 * 109.47501 * 329.99987 * 21 19 17 25 25 C 1.38233 * 120.00363 * 359.79431 * 14 13 12 26 26 C 1.38235 * 120.00418 * 89.99149 * 11 10 9 27 27 C 1.52994 * 109.47124 * 275.00185 * 5 4 2 28 28 C 1.52996 * 109.47258 * 63.92031 * 27 5 4 29 29 C 1.53000 * 109.47168 * 183.91981 * 27 5 4 30 30 H 1.09001 * 109.46828 * 240.00189 * 1 2 3 31 31 H 1.09002 * 109.46837 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47223 * 120.00084 * 1 2 3 33 33 H 0.97002 * 119.99629 * 359.97438 * 4 2 1 34 34 H 0.97002 * 120.00077 * 355.19060 * 9 7 5 35 35 H 1.09004 * 109.46549 * 299.99357 * 10 9 7 36 36 H 1.09000 * 109.47431 * 59.99066 * 10 9 7 37 37 H 1.07996 * 119.99794 * 359.97438 * 12 11 10 38 38 H 1.07996 * 120.00474 * 180.25109 * 13 12 11 39 39 H 1.09004 * 109.46624 * 30.02545 * 15 14 13 40 40 H 1.09000 * 109.47323 * 150.02171 * 15 14 13 41 41 H 0.97002 * 119.99582 * 359.97438 * 16 15 14 42 42 H 0.97000 * 119.99992 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.00577 * 179.97438 * 25 14 13 44 44 H 1.07999 * 119.99932 * 0.02562 * 26 11 10 45 45 H 1.09002 * 109.47381 * 303.91912 * 27 5 4 46 46 H 1.08995 * 109.47613 * 59.99944 * 28 27 5 47 47 H 1.09004 * 109.47488 * 179.97438 * 28 27 5 48 48 H 1.09004 * 109.47293 * 299.99568 * 28 27 5 49 49 H 1.09000 * 109.47339 * 57.08195 * 29 27 5 50 50 H 1.09005 * 109.46969 * 177.08123 * 29 27 5 51 51 H 1.09001 * 109.46976 * 297.08344 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0095 -0.3249 0.5887 7 6 4.1486 -2.4544 0.6011 8 8 3.4842 -3.4652 0.5123 9 7 5.3388 -2.4837 1.2327 10 6 5.7800 -3.7067 1.9077 11 6 7.1333 -3.4771 2.5295 12 6 8.2806 -3.7449 1.8063 13 6 9.5221 -3.5297 2.3749 14 6 9.6163 -3.0561 3.6702 15 6 10.9698 -2.8264 4.2920 16 7 11.4110 -4.0494 4.9671 17 6 12.6203 -4.0791 5.6088 18 1 13.2490 -3.2010 5.6169 19 6 13.0381 -5.2378 6.2489 20 7 14.2007 -5.2665 6.8653 21 14 11.9503 -6.7563 6.2355 22 1 12.2779 -7.5894 5.0505 23 1 12.1833 -7.5430 7.4732 24 1 10.5252 -6.3439 6.1720 25 6 8.4691 -2.7937 4.3954 26 6 7.2276 -3.0039 3.8249 27 6 4.1554 -1.0423 -1.4373 28 6 3.7273 0.3083 -2.0146 29 6 5.6822 -1.1405 -1.4475 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 1.6959 -2.0072 0.0013 34 1 5.9034 -1.6950 1.2402 35 1 5.0630 -3.9716 2.6849 36 1 5.8464 -4.5181 1.1829 37 1 8.2069 -4.1190 0.7959 38 1 10.4184 -3.7350 1.8086 39 1 11.6865 -2.5617 3.5146 40 1 10.9037 -2.0149 5.0168 41 1 10.8461 -4.8380 4.9601 42 1 14.4928 -6.0763 7.3122 43 1 8.5427 -2.4240 5.4075 44 1 6.3313 -2.7992 4.3916 45 1 3.7356 -1.8457 -2.0427 46 1 4.1470 1.1117 -1.4094 47 1 4.0906 0.3974 -3.0385 48 1 2.6395 0.3782 -2.0074 49 1 5.9890 -2.0805 -0.9889 50 1 6.0417 -1.1036 -2.4759 51 1 6.1036 -0.3073 -0.8851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270081477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:34 Heat of formation + Delta-G solvation = -68.877434 kcal Electronic energy + Delta-G solvation = -29798.995443 eV Core-core repulsion = 25697.161913 eV Total energy + Delta-G solvation = -4101.833530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77492 -40.62175 -40.00337 -37.21044 -36.96752 -35.92278 -34.47995 -33.84849 -32.22929 -31.87159 -30.91642 -29.24319 -27.99084 -27.38158 -25.69174 -23.85799 -23.64714 -22.19874 -21.79482 -21.71291 -21.11345 -19.88095 -18.97435 -17.95170 -17.29318 -17.06573 -16.94329 -16.67317 -16.59701 -16.47260 -15.93400 -15.83714 -15.46521 -15.15791 -14.82445 -14.75743 -14.54417 -14.36276 -14.11927 -14.05879 -13.78419 -13.70231 -13.40733 -13.32610 -13.22659 -13.18481 -13.10770 -12.88374 -12.85805 -12.55103 -12.20174 -12.07011 -11.93507 -11.91860 -11.83376 -11.78089 -11.10951 -11.04326 -10.93518 -10.23920 -10.10817 -9.84217 -9.67214 -9.34722 -8.05731 -5.39889 0.19573 0.48488 1.34541 1.36172 1.38536 1.46234 1.63864 1.86107 2.42991 2.45525 2.82967 3.25577 3.51317 3.62822 3.72315 3.84661 3.85956 3.88837 3.93457 4.00807 4.12433 4.20343 4.26868 4.31567 4.54276 4.54977 4.59508 4.66506 4.67332 4.68209 4.76408 4.87478 4.87661 4.92325 4.93499 5.05304 5.08181 5.11638 5.18077 5.23233 5.27729 5.34283 5.42079 5.43398 5.57853 5.72015 5.78084 6.03540 6.17916 6.36422 6.49607 7.01351 7.03640 7.20972 7.78571 7.98744 9.15475 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.001786 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.832240 B =15671.024075 C =15912.571536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.578 6.578 4 N -0.712 5.712 5 C 0.134 3.866 6 H 0.105 0.895 7 C 0.520 3.480 8 O -0.565 6.565 9 N -0.708 5.708 10 C 0.170 3.830 11 C -0.109 4.109 12 C -0.095 4.095 13 C -0.115 4.115 14 C -0.091 4.091 15 C 0.188 3.812 16 N -0.752 5.752 17 C -0.238 4.238 18 H 0.059 0.941 19 C -0.060 4.060 20 N -0.981 5.981 21 Si 0.954 3.046 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.256 1.256 25 C -0.116 4.116 26 C -0.098 4.098 27 C -0.093 4.093 28 C -0.130 4.130 29 C -0.157 4.157 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.416 0.584 34 H 0.414 0.586 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.365 0.635 42 H 0.259 0.741 43 H 0.123 0.877 44 H 0.142 0.858 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.046 0.954 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.892 8.858 -19.603 37.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.458 6.458 4 N -0.366 5.366 5 C 0.025 3.975 6 H 0.123 0.877 7 C 0.306 3.694 8 O -0.444 6.444 9 N -0.360 5.360 10 C 0.047 3.953 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.134 4.134 14 C -0.092 4.092 15 C 0.063 3.937 16 N -0.398 5.398 17 C -0.369 4.369 18 H 0.077 0.923 19 C -0.252 4.252 20 N -0.631 5.631 21 Si 0.781 3.219 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.181 1.181 25 C -0.135 4.135 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.188 4.188 29 C -0.214 4.214 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.253 0.747 34 H 0.251 0.749 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.199 0.801 42 H 0.068 0.932 43 H 0.141 0.859 44 H 0.160 0.840 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.750 8.980 -19.558 37.533 hybrid contribution 0.389 -0.979 0.582 1.204 sum -30.361 8.000 -18.976 36.686 Atomic orbital electron populations 1.21942 0.88349 1.06183 1.06264 1.21461 0.92090 0.82561 0.74118 1.90737 1.71637 1.32538 1.50840 1.45867 1.05369 1.10068 1.75333 1.20907 0.82710 0.95629 0.98260 0.87700 1.20651 0.81220 0.90087 0.77411 1.90703 1.57835 1.36065 1.59789 1.46099 1.19600 1.16361 1.53973 1.20125 0.91513 0.87152 0.96467 1.19808 0.94446 1.02001 0.94712 1.21225 0.91013 0.98665 1.00477 1.21227 0.98712 0.98803 0.94608 1.20147 0.94823 0.99192 0.95027 1.19733 0.91065 0.88592 0.94359 1.42689 1.19903 1.11961 1.65217 1.19056 0.94461 0.98132 1.25239 0.92271 1.25478 0.98355 1.01161 1.00182 1.69879 1.22517 1.29128 1.41590 0.85423 0.79518 0.79778 0.77164 1.20280 1.22007 1.18055 1.21214 0.92151 1.00173 0.99966 1.21216 0.97448 0.98079 0.94909 1.21398 0.97287 0.99392 0.93227 1.21776 1.01014 0.95477 1.00506 1.21993 0.93275 1.02533 1.03645 0.87548 0.88926 0.87264 0.74665 0.74941 0.90398 0.90168 0.83744 0.85632 0.94638 0.94864 0.80145 0.93223 0.85897 0.84040 0.90608 0.92937 0.92046 0.93461 0.92121 0.91029 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.32 71.24 0.74 -0.24 16 2 C 0.51 7.01 6.46 87.66 0.57 7.57 16 3 O -0.58 -12.38 14.22 -3.06 -0.04 -12.42 16 4 N -0.71 -8.88 5.00 -446.09 -2.23 -11.11 16 5 C 0.13 1.83 2.24 44.24 0.10 1.93 16 6 H 0.11 1.54 7.58 -2.39 -0.02 1.53 16 7 C 0.52 8.13 6.05 87.66 0.53 8.66 16 8 O -0.57 -12.08 16.09 -3.03 -0.05 -12.13 16 9 N -0.71 -9.19 4.44 -466.80 -2.07 -11.27 16 10 C 0.17 2.54 5.81 85.63 0.50 3.04 16 11 C -0.11 -1.93 5.25 -19.87 -0.10 -2.04 16 12 C -0.10 -1.85 9.70 22.27 0.22 -1.63 16 13 C -0.11 -2.91 9.70 22.27 0.22 -2.69 16 14 C -0.09 -2.71 5.25 -19.86 -0.10 -2.82 16 15 C 0.19 7.12 6.38 85.64 0.55 7.67 16 16 N -0.75 -35.40 5.40 -347.17 -1.87 -37.27 16 17 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 18 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 19 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 20 N -0.98 -62.90 13.97 21.65 0.30 -62.60 16 21 Si 0.95 45.76 27.73 68.60 1.90 47.66 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.26 -11.24 6.52 99.48 0.65 -10.59 16 25 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 26 C -0.10 -1.96 9.70 22.27 0.22 -1.74 16 27 C -0.09 -1.16 2.70 -10.80 -0.03 -1.19 16 28 C -0.13 -1.85 7.77 71.98 0.56 -1.29 16 29 C -0.16 -1.63 8.48 71.98 0.61 -1.02 16 30 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.61 8.12 -2.39 -0.02 0.59 16 32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.42 4.38 7.83 -92.71 -0.73 3.66 16 34 H 0.41 4.27 7.99 -92.71 -0.74 3.53 16 35 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 36 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.04 1.35 8.09 -2.39 -0.02 1.33 16 40 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.37 16.67 5.52 -92.71 -0.51 16.16 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 44 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.88 7.78 -2.39 -0.02 0.86 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.76 5.67 -2.38 -0.01 0.75 16 49 H 0.06 0.66 6.19 -2.39 -0.01 0.64 16 50 H 0.07 0.68 8.14 -2.38 -0.02 0.67 16 51 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -75.46 415.56 0.97 -74.49 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -1.08 Total: 29.10 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 6.12 Total: -4.46 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.87 Total: -122.24 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.09 Total: -24.55 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -75.46 0.97 -74.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270081477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.612 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds