Wall clock time and date at job start Wed Apr 1 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47400 * 2 1 4 4 C 1.53007 * 109.46759 * 119.99430 * 2 1 3 5 5 N 1.46503 * 109.47012 * 65.00362 * 4 2 1 6 6 C 1.35427 * 119.46972 * 270.01833 * 5 4 2 7 7 C 1.35764 * 121.23243 * 179.97438 * 6 5 4 8 8 C 1.39470 * 120.12742 * 359.72874 * 7 6 5 9 9 C 1.39346 * 118.96017 * 0.53916 * 8 7 6 10 10 C 1.47080 * 120.58604 * 179.73132 * 9 8 7 11 11 O 1.21644 * 120.00534 * 305.72216 * 10 9 8 12 12 N 1.34780 * 119.99596 * 125.72630 * 10 9 8 13 13 C 1.47421 * 125.65016 * 4.79414 * 12 10 9 14 14 C 1.54905 * 104.83510 * 204.09584 * 13 12 10 15 15 C 1.55162 * 101.58145 * 322.98797 * 14 13 12 16 16 C 1.47022 * 125.64895 * 184.75456 * 12 10 9 17 17 H 1.09004 * 109.88023 * 59.40231 * 16 12 10 18 18 C 1.52998 * 109.88141 * 298.39341 * 16 12 10 19 19 N 1.46503 * 109.47334 * 75.81262 * 18 16 12 20 20 C 1.36939 * 120.00237 * 187.43979 * 19 18 16 21 21 H 1.07999 * 119.99553 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99640 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00266 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47132 * 269.99855 * 24 22 20 26 26 H 1.48506 * 109.47154 * 29.99929 * 24 22 20 27 27 H 1.48505 * 109.47062 * 149.99587 * 24 22 20 28 28 C 1.34663 * 119.47024 * 89.99677 * 5 4 2 29 29 O 1.21882 * 120.10127 * 0.04395 * 28 5 4 30 30 H 1.08998 * 109.47726 * 300.00541 * 1 2 3 31 31 H 1.09004 * 109.47128 * 60.00288 * 1 2 3 32 32 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47726 * 239.99459 * 2 1 3 34 34 H 1.08995 * 109.47268 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46745 * 299.99946 * 3 2 1 36 36 H 1.08998 * 109.47123 * 59.99090 * 3 2 1 37 37 H 1.08998 * 109.47569 * 304.99956 * 4 2 1 38 38 H 1.08999 * 109.46878 * 184.99933 * 4 2 1 39 39 H 1.08000 * 119.38634 * 359.96246 * 6 5 4 40 40 H 1.07995 * 119.93738 * 180.02562 * 7 6 5 41 41 H 1.07996 * 120.52489 * 180.28019 * 8 7 6 42 42 H 1.09003 * 110.36974 * 322.93450 * 13 12 10 43 43 H 1.09007 * 110.36666 * 85.25283 * 13 12 10 44 44 H 1.08995 * 111.00960 * 81.06320 * 14 13 12 45 45 H 1.09001 * 111.00591 * 204.91709 * 14 13 12 46 46 H 1.09001 * 110.72059 * 277.14395 * 15 14 13 47 47 H 1.08994 * 110.71845 * 153.86304 * 15 14 13 48 48 H 1.08999 * 109.47237 * 315.81469 * 18 16 12 49 49 H 1.08997 * 109.47294 * 195.80913 * 18 16 12 50 50 H 0.97004 * 119.99503 * 7.43612 * 19 18 16 51 51 H 0.96995 * 119.99859 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1908 6 6 0.4684 -2.5212 1.7213 7 6 0.0735 -3.8197 1.6863 8 6 0.8879 -4.7833 1.0917 9 6 2.1101 -4.3919 0.5488 10 6 2.9995 -5.3793 -0.0814 11 8 3.3399 -6.3717 0.5341 12 7 3.4375 -5.1844 -1.3411 13 6 3.1868 -3.9859 -2.1622 14 6 3.3217 -4.4730 -3.6265 15 6 4.4835 -5.4947 -3.5091 16 6 4.2451 -6.1314 -2.1237 17 1 3.7084 -7.0738 -2.2336 18 6 5.5845 -6.3742 -1.4251 19 7 5.3825 -7.2599 -0.2758 20 6 6.4126 -7.4982 0.5944 21 1 7.3738 -7.0329 0.4336 22 6 6.2209 -8.3370 1.6837 23 7 7.2112 -8.5665 2.5198 24 14 4.5580 -9.1411 1.9622 25 1 3.7169 -8.2582 2.8095 26 1 3.8877 -9.3577 0.6548 27 1 4.7476 -10.4470 2.6435 28 6 2.4789 -3.0232 0.6098 29 8 3.5406 -2.6544 0.1383 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6053 -0.2616 2.1371 38 1 3.1262 -0.6443 1.2953 39 1 -0.1736 -1.7844 2.1810 40 1 -0.8752 -4.1063 2.1154 41 1 0.5780 -5.8172 1.0562 42 1 2.1819 -3.6048 -1.9803 43 1 3.9294 -3.2172 -1.9481 44 1 2.4060 -4.9596 -3.9624 45 1 3.5906 -3.6501 -4.2888 46 1 5.4478 -4.9874 -3.5395 47 1 4.4169 -6.2464 -4.2956 48 1 5.9938 -5.4234 -1.0836 49 1 6.2798 -6.8390 -2.1241 50 1 4.5189 -7.6774 -0.1312 51 1 7.0774 -9.1528 3.2808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277956805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:43 Heat of formation + Delta-G solvation = -0.627178 kcal Electronic energy + Delta-G solvation = -32694.115325 eV Core-core repulsion = 28595.241348 eV Total energy + Delta-G solvation = -4098.873976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70651 -39.65074 -37.26894 -37.12744 -36.39230 -34.31752 -33.46943 -31.46961 -31.18023 -30.00415 -28.97552 -27.72927 -27.29118 -25.20169 -24.78543 -22.97853 -22.69220 -21.34268 -20.94483 -20.71305 -19.10588 -18.01274 -17.48907 -17.23258 -16.72347 -16.32784 -16.09995 -15.85760 -15.15871 -14.85673 -14.52459 -14.23818 -14.16461 -13.88243 -13.58306 -13.45016 -13.26885 -12.93422 -12.76456 -12.72521 -12.62403 -12.43969 -12.29175 -12.26415 -12.05880 -11.80589 -11.70835 -11.51638 -11.41455 -11.30111 -11.19183 -11.04529 -10.58860 -10.47756 -10.21425 -10.14192 -10.03782 -9.83051 -9.39790 -9.02593 -8.53357 -8.08193 -8.06259 -6.75982 -5.42898 -2.71909 0.45331 1.73015 2.31673 3.08723 3.39902 3.59093 3.71340 3.77214 3.86113 4.18489 4.24734 4.32012 4.54108 4.60585 4.67567 4.71040 4.80325 4.88172 4.99680 5.00633 5.06840 5.10144 5.11340 5.13418 5.29311 5.33832 5.41863 5.48615 5.51049 5.63170 5.64848 5.73055 5.77197 5.79718 5.80768 5.86297 5.87395 5.96849 6.00802 6.07914 6.17524 6.26944 6.32389 6.41906 6.54662 6.83173 6.91734 7.06247 7.91770 8.00846 8.34184 8.71675 8.82087 9.66545 10.39498 10.62168 11.76370 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003887 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.402110 B = 7201.088407 C = 8224.347379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.092 3.908 5 N -0.491 5.491 6 C 0.146 3.854 7 C -0.235 4.235 8 C 0.030 3.970 9 C -0.244 4.244 10 C 0.588 3.412 11 O -0.489 6.489 12 N -0.600 5.600 13 C 0.112 3.888 14 C -0.135 4.135 15 C -0.122 4.122 16 C 0.127 3.873 17 H 0.072 0.928 18 C 0.151 3.849 19 N -0.743 5.743 20 C -0.225 4.225 21 H 0.081 0.919 22 C -0.001 4.001 23 N -0.947 5.947 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.282 1.282 27 H -0.306 1.306 28 C 0.526 3.474 29 O -0.525 6.525 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.025 0.975 50 H 0.376 0.624 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.611 21.667 -8.944 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.130 4.130 3 C -0.202 4.202 4 C -0.029 4.029 5 N -0.201 5.201 6 C 0.017 3.983 7 C -0.258 4.258 8 C 0.007 3.993 9 C -0.251 4.251 10 C 0.374 3.626 11 O -0.362 6.362 12 N -0.335 5.335 13 C -0.012 4.012 14 C -0.173 4.173 15 C -0.160 4.160 16 C 0.024 3.976 17 H 0.090 0.910 18 C 0.022 3.978 19 N -0.394 5.394 20 C -0.356 4.356 21 H 0.099 0.901 22 C -0.195 4.195 23 N -0.597 5.597 24 Si 0.735 3.265 25 H -0.210 1.210 26 H -0.209 1.209 27 H -0.234 1.234 28 C 0.327 3.673 29 O -0.405 6.405 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.179 0.821 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.048 0.952 49 H 0.042 0.958 50 H 0.215 0.785 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.520 21.390 -8.731 30.901 hybrid contribution -1.250 -0.472 0.520 1.434 sum -21.770 20.919 -8.211 31.288 Atomic orbital electron populations 1.21965 0.94827 1.01934 1.02349 1.21452 0.96276 0.96965 0.98322 1.21751 1.01683 0.94531 1.02194 1.22173 1.03661 0.77813 0.99255 1.45521 1.16835 1.10499 1.47255 1.22037 0.86397 0.97420 0.92447 1.20562 1.03654 0.91526 1.10098 1.21830 0.90413 1.00244 0.86784 1.21060 0.99083 0.93467 1.11513 1.17007 0.79979 0.85527 0.80052 1.90806 1.55028 1.29367 1.61029 1.48211 1.52988 1.18888 1.13385 1.22277 1.00754 0.88857 0.89283 1.22801 0.99024 0.99276 0.96234 1.22610 0.99162 0.98584 0.95692 1.21940 0.93347 0.92207 0.90096 0.90999 1.20949 0.92400 0.94483 0.89979 1.43038 1.13145 1.55265 1.27942 1.19041 0.91975 1.22087 1.02459 0.90115 1.24563 0.97040 1.00622 0.97296 1.69749 1.30954 1.42365 1.16652 0.86212 0.85303 0.77441 0.77501 1.20967 1.20863 1.23357 1.16928 0.84562 0.85631 0.80178 1.90939 1.22043 1.79844 1.47672 0.92354 0.92056 0.92544 0.90105 0.91993 0.92015 0.92403 0.89064 0.87773 0.82105 0.83237 0.84179 0.92442 0.90135 0.91104 0.90245 0.90158 0.90166 0.95239 0.95791 0.78455 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.63 37.16 0.32 -0.43 16 2 C -0.11 -0.73 3.13 -90.62 -0.28 -1.01 16 3 C -0.14 -0.77 9.19 37.16 0.34 -0.43 16 4 C 0.09 0.72 4.83 -4.04 -0.02 0.70 16 5 N -0.49 -5.05 2.46 -119.34 -0.29 -5.34 16 6 C 0.15 1.07 8.20 -16.85 -0.14 0.93 16 7 C -0.24 -1.97 9.99 -40.01 -0.40 -2.37 16 8 C 0.03 0.38 9.89 -38.71 -0.38 0.00 16 9 C -0.24 -4.03 5.05 -104.50 -0.53 -4.56 16 10 C 0.59 12.18 6.84 -12.67 -0.09 12.09 16 11 O -0.49 -12.49 12.08 5.24 0.06 -12.43 16 12 N -0.60 -10.95 3.04 -164.40 -0.50 -11.45 16 13 C 0.11 1.58 5.19 -2.53 -0.01 1.57 16 14 C -0.14 -1.50 7.09 -24.58 -0.17 -1.67 16 15 C -0.12 -1.59 6.44 -24.89 -0.16 -1.75 16 16 C 0.13 2.32 3.08 -66.95 -0.21 2.11 16 17 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 18 C 0.15 3.47 5.61 -4.04 -0.02 3.45 16 19 N -0.74 -21.09 3.88 -59.91 -0.23 -21.32 16 20 C -0.23 -7.38 10.47 -15.06 -0.16 -7.54 16 21 H 0.08 2.79 8.06 -52.49 -0.42 2.36 16 22 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 23 N -0.95 -33.16 13.97 55.49 0.78 -32.38 16 24 Si 0.90 26.67 26.61 -169.99 -4.52 22.15 16 25 H -0.28 -8.45 7.11 56.52 0.40 -8.05 16 26 H -0.28 -8.05 6.52 56.52 0.37 -7.68 16 27 H -0.31 -8.87 7.11 56.52 0.40 -8.47 16 28 C 0.53 8.02 6.57 -14.91 -0.10 7.92 16 29 O -0.52 -9.51 13.28 5.03 0.07 -9.45 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.30 6.34 -51.93 -0.33 -0.03 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 0.45 8.00 -51.93 -0.42 0.03 16 38 H 0.10 1.04 7.38 -51.93 -0.38 0.65 16 39 H 0.16 0.50 7.88 -52.49 -0.41 0.08 16 40 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.06 0.75 7.25 -51.93 -0.38 0.37 16 43 H 0.08 1.27 6.74 -51.93 -0.35 0.92 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 50 H 0.38 10.78 3.20 -40.82 -0.13 10.65 16 51 H 0.25 8.45 8.31 -40.82 -0.34 8.11 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -43.07 396.48 -9.08 -52.16 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.31 Total: 3.21 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.10 Total: 8.88 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -0.25 Total: -70.50 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.13 Total: -21.87 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.52 Total: 22.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -43.07 -9.08 -52.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277956805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.529 kcal (2) G-P(sol) polarization free energy of solvation -43.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds