Wall clock time and date at job start Wed Apr 1 2020 05:29:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52999 * 109.47400 * 2 1
4 4 C 1.53007 * 109.46759 * 119.99430 * 2 1 3
5 5 N 1.46503 * 109.47012 * 65.00362 * 4 2 1
6 6 C 1.35427 * 119.46972 * 270.01833 * 5 4 2
7 7 C 1.35764 * 121.23243 * 179.97438 * 6 5 4
8 8 C 1.39470 * 120.12742 * 359.72874 * 7 6 5
9 9 C 1.39346 * 118.96017 * 0.53916 * 8 7 6
10 10 C 1.47080 * 120.58604 * 179.73132 * 9 8 7
11 11 O 1.21644 * 120.00534 * 305.72216 * 10 9 8
12 12 N 1.34780 * 119.99596 * 125.72630 * 10 9 8
13 13 C 1.47421 * 125.65016 * 4.79414 * 12 10 9
14 14 C 1.54905 * 104.83510 * 204.09584 * 13 12 10
15 15 C 1.55162 * 101.58145 * 322.98797 * 14 13 12
16 16 C 1.47022 * 125.64895 * 184.75456 * 12 10 9
17 17 H 1.09004 * 109.88023 * 59.40231 * 16 12 10
18 18 C 1.52998 * 109.88141 * 298.39341 * 16 12 10
19 19 N 1.46503 * 109.47334 * 75.81262 * 18 16 12
20 20 C 1.36939 * 120.00237 * 187.43979 * 19 18 16
21 21 H 1.07999 * 119.99553 * 0.02562 * 20 19 18
22 22 C 1.38809 * 119.99849 * 179.97438 * 20 19 18
23 23 N 1.31622 * 119.99640 * 179.97438 * 22 20 19
24 24 Si 1.86796 * 120.00266 * 0.02562 * 22 20 19
25 25 H 1.48498 * 109.47132 * 269.99855 * 24 22 20
26 26 H 1.48506 * 109.47154 * 29.99929 * 24 22 20
27 27 H 1.48505 * 109.47062 * 149.99587 * 24 22 20
28 28 C 1.34663 * 119.47024 * 89.99677 * 5 4 2
29 29 O 1.21882 * 120.10127 * 0.04395 * 28 5 4
30 30 H 1.08998 * 109.47726 * 300.00541 * 1 2 3
31 31 H 1.09004 * 109.47128 * 60.00288 * 1 2 3
32 32 H 1.09001 * 109.47314 * 179.97438 * 1 2 3
33 33 H 1.08998 * 109.47726 * 239.99459 * 2 1 3
34 34 H 1.08995 * 109.47268 * 179.97438 * 3 2 1
35 35 H 1.09004 * 109.46745 * 299.99946 * 3 2 1
36 36 H 1.08998 * 109.47123 * 59.99090 * 3 2 1
37 37 H 1.08998 * 109.47569 * 304.99956 * 4 2 1
38 38 H 1.08999 * 109.46878 * 184.99933 * 4 2 1
39 39 H 1.08000 * 119.38634 * 359.96246 * 6 5 4
40 40 H 1.07995 * 119.93738 * 180.02562 * 7 6 5
41 41 H 1.07996 * 120.52489 * 180.28019 * 8 7 6
42 42 H 1.09003 * 110.36974 * 322.93450 * 13 12 10
43 43 H 1.09007 * 110.36666 * 85.25283 * 13 12 10
44 44 H 1.08995 * 111.00960 * 81.06320 * 14 13 12
45 45 H 1.09001 * 111.00591 * 204.91709 * 14 13 12
46 46 H 1.09001 * 110.72059 * 277.14395 * 15 14 13
47 47 H 1.08994 * 110.71845 * 153.86304 * 15 14 13
48 48 H 1.08999 * 109.47237 * 315.81469 * 18 16 12
49 49 H 1.08997 * 109.47294 * 195.80913 * 18 16 12
50 50 H 0.97004 * 119.99503 * 7.43612 * 19 18 16
51 51 H 0.96995 * 119.99859 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 1.2494
5 7 1.6523 -2.1328 1.1908
6 6 0.4684 -2.5212 1.7213
7 6 0.0735 -3.8197 1.6863
8 6 0.8879 -4.7833 1.0917
9 6 2.1101 -4.3919 0.5488
10 6 2.9995 -5.3793 -0.0814
11 8 3.3399 -6.3717 0.5341
12 7 3.4375 -5.1844 -1.3411
13 6 3.1868 -3.9859 -2.1622
14 6 3.3217 -4.4730 -3.6265
15 6 4.4835 -5.4947 -3.5091
16 6 4.2451 -6.1314 -2.1237
17 1 3.7084 -7.0738 -2.2336
18 6 5.5845 -6.3742 -1.4251
19 7 5.3825 -7.2599 -0.2758
20 6 6.4126 -7.4982 0.5944
21 1 7.3738 -7.0329 0.4336
22 6 6.2209 -8.3370 1.6837
23 7 7.2112 -8.5665 2.5198
24 14 4.5580 -9.1411 1.9622
25 1 3.7169 -8.2582 2.8095
26 1 3.8877 -9.3577 0.6548
27 1 4.7476 -10.4470 2.6435
28 6 2.4789 -3.0232 0.6098
29 8 3.5406 -2.6544 0.1383
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 1.8934 -0.5139 -0.8899
34 1 3.1300 1.4424 0.0005
35 1 1.6767 1.9563 -0.8900
36 1 1.6766 1.9564 0.8899
37 1 1.6053 -0.2616 2.1371
38 1 3.1262 -0.6443 1.2953
39 1 -0.1736 -1.7844 2.1810
40 1 -0.8752 -4.1063 2.1154
41 1 0.5780 -5.8172 1.0562
42 1 2.1819 -3.6048 -1.9803
43 1 3.9294 -3.2172 -1.9481
44 1 2.4060 -4.9596 -3.9624
45 1 3.5906 -3.6501 -4.2888
46 1 5.4478 -4.9874 -3.5395
47 1 4.4169 -6.2464 -4.2956
48 1 5.9938 -5.4234 -1.0836
49 1 6.2798 -6.8390 -2.1241
50 1 4.5189 -7.6774 -0.1312
51 1 7.0774 -9.1528 3.2808
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001277956805.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:43
Heat of formation + Delta-G solvation = -0.627178 kcal
Electronic energy + Delta-G solvation = -32694.115325 eV
Core-core repulsion = 28595.241348 eV
Total energy + Delta-G solvation = -4098.873976 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-41.70651 -39.65074 -37.26894 -37.12744 -36.39230 -34.31752 -33.46943 -31.46961
-31.18023 -30.00415 -28.97552 -27.72927 -27.29118 -25.20169 -24.78543 -22.97853
-22.69220 -21.34268 -20.94483 -20.71305 -19.10588 -18.01274 -17.48907 -17.23258
-16.72347 -16.32784 -16.09995 -15.85760 -15.15871 -14.85673 -14.52459 -14.23818
-14.16461 -13.88243 -13.58306 -13.45016 -13.26885 -12.93422 -12.76456 -12.72521
-12.62403 -12.43969 -12.29175 -12.26415 -12.05880 -11.80589 -11.70835 -11.51638
-11.41455 -11.30111 -11.19183 -11.04529 -10.58860 -10.47756 -10.21425 -10.14192
-10.03782 -9.83051 -9.39790 -9.02593 -8.53357 -8.08193 -8.06259 -6.75982
-5.42898 -2.71909 0.45331 1.73015 2.31673 3.08723 3.39902 3.59093
3.71340 3.77214 3.86113 4.18489 4.24734 4.32012 4.54108 4.60585
4.67567 4.71040 4.80325 4.88172 4.99680 5.00633 5.06840 5.10144
5.11340 5.13418 5.29311 5.33832 5.41863 5.48615 5.51049 5.63170
5.64848 5.73055 5.77197 5.79718 5.80768 5.86297 5.87395 5.96849
6.00802 6.07914 6.17524 6.26944 6.32389 6.41906 6.54662 6.83173
6.91734 7.06247 7.91770 8.00846 8.34184 8.71675 8.82087 9.66545
10.39498 10.62168 11.76370
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012007 B = 0.003887 C = 0.003404
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2331.402110 B = 7201.088407 C = 8224.347379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.111 4.111
3 C -0.144 4.144
4 C 0.092 3.908
5 N -0.491 5.491
6 C 0.146 3.854
7 C -0.235 4.235
8 C 0.030 3.970
9 C -0.244 4.244
10 C 0.588 3.412
11 O -0.489 6.489
12 N -0.600 5.600
13 C 0.112 3.888
14 C -0.135 4.135
15 C -0.122 4.122
16 C 0.127 3.873
17 H 0.072 0.928
18 C 0.151 3.849
19 N -0.743 5.743
20 C -0.225 4.225
21 H 0.081 0.919
22 C -0.001 4.001
23 N -0.947 5.947
24 Si 0.903 3.097
25 H -0.283 1.283
26 H -0.282 1.282
27 H -0.306 1.306
28 C 0.526 3.474
29 O -0.525 6.525
30 H 0.057 0.943
31 H 0.060 0.940
32 H 0.056 0.944
33 H 0.081 0.919
34 H 0.061 0.939
35 H 0.061 0.939
36 H 0.057 0.943
37 H 0.091 0.909
38 H 0.104 0.896
39 H 0.162 0.838
40 H 0.150 0.850
41 H 0.140 0.860
42 H 0.057 0.943
43 H 0.081 0.919
44 H 0.070 0.930
45 H 0.079 0.921
46 H 0.080 0.920
47 H 0.080 0.920
48 H 0.030 0.970
49 H 0.025 0.975
50 H 0.376 0.624
51 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.611 21.667 -8.944 31.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.130 4.130
3 C -0.202 4.202
4 C -0.029 4.029
5 N -0.201 5.201
6 C 0.017 3.983
7 C -0.258 4.258
8 C 0.007 3.993
9 C -0.251 4.251
10 C 0.374 3.626
11 O -0.362 6.362
12 N -0.335 5.335
13 C -0.012 4.012
14 C -0.173 4.173
15 C -0.160 4.160
16 C 0.024 3.976
17 H 0.090 0.910
18 C 0.022 3.978
19 N -0.394 5.394
20 C -0.356 4.356
21 H 0.099 0.901
22 C -0.195 4.195
23 N -0.597 5.597
24 Si 0.735 3.265
25 H -0.210 1.210
26 H -0.209 1.209
27 H -0.234 1.234
28 C 0.327 3.673
29 O -0.405 6.405
30 H 0.076 0.924
31 H 0.079 0.921
32 H 0.075 0.925
33 H 0.099 0.901
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.076 0.924
37 H 0.109 0.891
38 H 0.122 0.878
39 H 0.179 0.821
40 H 0.168 0.832
41 H 0.158 0.842
42 H 0.076 0.924
43 H 0.099 0.901
44 H 0.089 0.911
45 H 0.098 0.902
46 H 0.098 0.902
47 H 0.098 0.902
48 H 0.048 0.952
49 H 0.042 0.958
50 H 0.215 0.785
51 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -20.520 21.390 -8.731 30.901
hybrid contribution -1.250 -0.472 0.520 1.434
sum -21.770 20.919 -8.211 31.288
Atomic orbital electron populations
1.21965 0.94827 1.01934 1.02349 1.21452 0.96276 0.96965 0.98322
1.21751 1.01683 0.94531 1.02194 1.22173 1.03661 0.77813 0.99255
1.45521 1.16835 1.10499 1.47255 1.22037 0.86397 0.97420 0.92447
1.20562 1.03654 0.91526 1.10098 1.21830 0.90413 1.00244 0.86784
1.21060 0.99083 0.93467 1.11513 1.17007 0.79979 0.85527 0.80052
1.90806 1.55028 1.29367 1.61029 1.48211 1.52988 1.18888 1.13385
1.22277 1.00754 0.88857 0.89283 1.22801 0.99024 0.99276 0.96234
1.22610 0.99162 0.98584 0.95692 1.21940 0.93347 0.92207 0.90096
0.90999 1.20949 0.92400 0.94483 0.89979 1.43038 1.13145 1.55265
1.27942 1.19041 0.91975 1.22087 1.02459 0.90115 1.24563 0.97040
1.00622 0.97296 1.69749 1.30954 1.42365 1.16652 0.86212 0.85303
0.77441 0.77501 1.20967 1.20863 1.23357 1.16928 0.84562 0.85631
0.80178 1.90939 1.22043 1.79844 1.47672 0.92354 0.92056 0.92544
0.90105 0.91993 0.92015 0.92403 0.89064 0.87773 0.82105 0.83237
0.84179 0.92442 0.90135 0.91104 0.90245 0.90158 0.90166 0.95239
0.95791 0.78455 0.93681
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.75 8.63 37.16 0.32 -0.43 16
2 C -0.11 -0.73 3.13 -90.62 -0.28 -1.01 16
3 C -0.14 -0.77 9.19 37.16 0.34 -0.43 16
4 C 0.09 0.72 4.83 -4.04 -0.02 0.70 16
5 N -0.49 -5.05 2.46 -119.34 -0.29 -5.34 16
6 C 0.15 1.07 8.20 -16.85 -0.14 0.93 16
7 C -0.24 -1.97 9.99 -40.01 -0.40 -2.37 16
8 C 0.03 0.38 9.89 -38.71 -0.38 0.00 16
9 C -0.24 -4.03 5.05 -104.50 -0.53 -4.56 16
10 C 0.59 12.18 6.84 -12.67 -0.09 12.09 16
11 O -0.49 -12.49 12.08 5.24 0.06 -12.43 16
12 N -0.60 -10.95 3.04 -164.40 -0.50 -11.45 16
13 C 0.11 1.58 5.19 -2.53 -0.01 1.57 16
14 C -0.14 -1.50 7.09 -24.58 -0.17 -1.67 16
15 C -0.12 -1.59 6.44 -24.89 -0.16 -1.75 16
16 C 0.13 2.32 3.08 -66.95 -0.21 2.11 16
17 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16
18 C 0.15 3.47 5.61 -4.04 -0.02 3.45 16
19 N -0.74 -21.09 3.88 -59.91 -0.23 -21.32 16
20 C -0.23 -7.38 10.47 -15.06 -0.16 -7.54 16
21 H 0.08 2.79 8.06 -52.49 -0.42 2.36 16
22 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16
23 N -0.95 -33.16 13.97 55.49 0.78 -32.38 16
24 Si 0.90 26.67 26.61 -169.99 -4.52 22.15 16
25 H -0.28 -8.45 7.11 56.52 0.40 -8.05 16
26 H -0.28 -8.05 6.52 56.52 0.37 -7.68 16
27 H -0.31 -8.87 7.11 56.52 0.40 -8.47 16
28 C 0.53 8.02 6.57 -14.91 -0.10 7.92 16
29 O -0.52 -9.51 13.28 5.03 0.07 -9.45 16
30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16
31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.06 0.30 6.34 -51.93 -0.33 -0.03 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
36 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16
37 H 0.09 0.45 8.00 -51.93 -0.42 0.03 16
38 H 0.10 1.04 7.38 -51.93 -0.38 0.65 16
39 H 0.16 0.50 7.88 -52.49 -0.41 0.08 16
40 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16
41 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16
42 H 0.06 0.75 7.25 -51.93 -0.38 0.37 16
43 H 0.08 1.27 6.74 -51.93 -0.35 0.92 16
44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
46 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16
47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
48 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16
49 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16
50 H 0.38 10.78 3.20 -40.82 -0.13 10.65 16
51 H 0.25 8.45 8.31 -40.82 -0.34 8.11 16
LS Contribution 396.48 15.07 5.97 5.97
Total: -1.00 -43.07 396.48 -9.08 -52.16
By element:
Atomic # 1 Polarization: 11.52 SS G_CDS: -8.31 Total: 3.21 kcal
Atomic # 6 Polarization: 10.99 SS G_CDS: -2.10 Total: 8.88 kcal
Atomic # 7 Polarization: -70.25 SS G_CDS: -0.25 Total: -70.50 kcal
Atomic # 8 Polarization: -22.00 SS G_CDS: 0.13 Total: -21.87 kcal
Atomic # 14 Polarization: 26.67 SS G_CDS: -4.52 Total: 22.15 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -43.07 -9.08 -52.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277956805.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.529 kcal
(2) G-P(sol) polarization free energy of solvation -43.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.627 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds