Wall clock time and date at job start Wed Apr 1 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47400 * 2 1 4 4 C 1.53007 * 109.46759 * 119.99430 * 2 1 3 5 5 N 1.46503 * 109.47012 * 65.00362 * 4 2 1 6 6 C 1.35427 * 119.46972 * 270.01833 * 5 4 2 7 7 C 1.35764 * 121.23243 * 179.97438 * 6 5 4 8 8 C 1.39470 * 120.12742 * 359.72874 * 7 6 5 9 9 C 1.39346 * 118.96017 * 0.53916 * 8 7 6 10 10 C 1.47080 * 120.58604 * 179.73132 * 9 8 7 11 11 O 1.21644 * 120.00534 * 305.72216 * 10 9 8 12 12 N 1.34780 * 119.99596 * 125.72630 * 10 9 8 13 13 C 1.47421 * 125.65016 * 4.79414 * 12 10 9 14 14 C 1.54905 * 104.83510 * 204.09584 * 13 12 10 15 15 C 1.55162 * 101.58145 * 322.98797 * 14 13 12 16 16 C 1.47022 * 125.64895 * 184.75456 * 12 10 9 17 17 H 1.09004 * 109.88023 * 59.40231 * 16 12 10 18 18 C 1.52998 * 109.88141 * 298.39341 * 16 12 10 19 19 N 1.46503 * 109.47334 * 75.81262 * 18 16 12 20 20 C 1.36939 * 120.00237 * 187.43979 * 19 18 16 21 21 H 1.07999 * 119.99553 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99640 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00266 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47132 * 269.99855 * 24 22 20 26 26 H 1.48506 * 109.47154 * 29.99929 * 24 22 20 27 27 H 1.48505 * 109.47062 * 149.99587 * 24 22 20 28 28 C 1.34663 * 119.47024 * 89.99677 * 5 4 2 29 29 O 1.21882 * 120.10127 * 0.04395 * 28 5 4 30 30 H 1.08998 * 109.47726 * 300.00541 * 1 2 3 31 31 H 1.09004 * 109.47128 * 60.00288 * 1 2 3 32 32 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47726 * 239.99459 * 2 1 3 34 34 H 1.08995 * 109.47268 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46745 * 299.99946 * 3 2 1 36 36 H 1.08998 * 109.47123 * 59.99090 * 3 2 1 37 37 H 1.08998 * 109.47569 * 304.99956 * 4 2 1 38 38 H 1.08999 * 109.46878 * 184.99933 * 4 2 1 39 39 H 1.08000 * 119.38634 * 359.96246 * 6 5 4 40 40 H 1.07995 * 119.93738 * 180.02562 * 7 6 5 41 41 H 1.07996 * 120.52489 * 180.28019 * 8 7 6 42 42 H 1.09003 * 110.36974 * 322.93450 * 13 12 10 43 43 H 1.09007 * 110.36666 * 85.25283 * 13 12 10 44 44 H 1.08995 * 111.00960 * 81.06320 * 14 13 12 45 45 H 1.09001 * 111.00591 * 204.91709 * 14 13 12 46 46 H 1.09001 * 110.72059 * 277.14395 * 15 14 13 47 47 H 1.08994 * 110.71845 * 153.86304 * 15 14 13 48 48 H 1.08999 * 109.47237 * 315.81469 * 18 16 12 49 49 H 1.08997 * 109.47294 * 195.80913 * 18 16 12 50 50 H 0.97004 * 119.99503 * 7.43612 * 19 18 16 51 51 H 0.96995 * 119.99859 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1908 6 6 0.4684 -2.5212 1.7213 7 6 0.0735 -3.8197 1.6863 8 6 0.8879 -4.7833 1.0917 9 6 2.1101 -4.3919 0.5488 10 6 2.9995 -5.3793 -0.0814 11 8 3.3399 -6.3717 0.5341 12 7 3.4375 -5.1844 -1.3411 13 6 3.1868 -3.9859 -2.1622 14 6 3.3217 -4.4730 -3.6265 15 6 4.4835 -5.4947 -3.5091 16 6 4.2451 -6.1314 -2.1237 17 1 3.7084 -7.0738 -2.2336 18 6 5.5845 -6.3742 -1.4251 19 7 5.3825 -7.2599 -0.2758 20 6 6.4126 -7.4982 0.5944 21 1 7.3738 -7.0329 0.4336 22 6 6.2209 -8.3370 1.6837 23 7 7.2112 -8.5665 2.5198 24 14 4.5580 -9.1411 1.9622 25 1 3.7169 -8.2582 2.8095 26 1 3.8877 -9.3577 0.6548 27 1 4.7476 -10.4470 2.6435 28 6 2.4789 -3.0232 0.6098 29 8 3.5406 -2.6544 0.1383 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6053 -0.2616 2.1371 38 1 3.1262 -0.6443 1.2953 39 1 -0.1736 -1.7844 2.1810 40 1 -0.8752 -4.1063 2.1154 41 1 0.5780 -5.8172 1.0562 42 1 2.1819 -3.6048 -1.9803 43 1 3.9294 -3.2172 -1.9481 44 1 2.4060 -4.9596 -3.9624 45 1 3.5906 -3.6501 -4.2888 46 1 5.4478 -4.9874 -3.5395 47 1 4.4169 -6.2464 -4.2956 48 1 5.9938 -5.4234 -1.0836 49 1 6.2798 -6.8390 -2.1241 50 1 4.5189 -7.6774 -0.1312 51 1 7.0774 -9.1528 3.2808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277956805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:42 Heat of formation + Delta-G solvation = -31.965878 kcal Electronic energy + Delta-G solvation = -32695.474273 eV Core-core repulsion = 28595.241348 eV Total energy + Delta-G solvation = -4100.232925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.65311 -40.99775 -38.51857 -38.19887 -37.20105 -36.43097 -34.38603 -33.58190 -32.60437 -31.02208 -30.66501 -28.18973 -27.91131 -26.81221 -26.07229 -24.30668 -23.84701 -23.17504 -22.07477 -21.29122 -20.49495 -19.87488 -18.69806 -18.39383 -17.91333 -17.52559 -17.15057 -16.74941 -16.64811 -16.24706 -15.75323 -15.59462 -15.32367 -15.17541 -14.88937 -14.73296 -14.62909 -14.28230 -13.90565 -13.84879 -13.63088 -13.56209 -13.42440 -13.34736 -13.11493 -13.06189 -12.96187 -12.78774 -12.72897 -12.28105 -12.14253 -12.07063 -11.95797 -11.92721 -11.80394 -11.68702 -11.60537 -11.20355 -11.01880 -10.99721 -10.66179 -9.61257 -9.14970 -9.00163 -8.04571 -5.30326 -0.44965 0.84035 1.26755 1.39983 1.41071 1.49567 1.83703 2.12064 2.51081 2.56623 3.27200 3.44811 3.52605 3.60967 3.68351 3.76646 3.81332 3.86575 3.94031 3.97324 4.12599 4.17090 4.22939 4.25142 4.30660 4.38939 4.57362 4.60672 4.69611 4.71389 4.76384 4.79823 4.82725 4.85081 4.92230 4.95102 4.99329 5.00717 5.06704 5.12299 5.21774 5.22727 5.34047 5.37966 5.39019 5.52277 5.55251 5.70221 5.96178 6.21605 6.60694 6.91582 7.09300 7.31376 7.96380 8.19606 9.18153 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003887 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.402110 B = 7201.088407 C = 8224.347379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.088 3.912 5 N -0.484 5.484 6 C 0.174 3.826 7 C -0.238 4.238 8 C 0.049 3.951 9 C -0.309 4.309 10 C 0.576 3.424 11 O -0.557 6.557 12 N -0.603 5.603 13 C 0.114 3.886 14 C -0.117 4.117 15 C -0.113 4.113 16 C 0.126 3.874 17 H 0.067 0.933 18 C 0.148 3.852 19 N -0.745 5.745 20 C -0.223 4.223 21 H 0.046 0.954 22 C -0.064 4.064 23 N -0.988 5.988 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.271 1.271 27 H -0.294 1.294 28 C 0.519 3.481 29 O -0.576 6.576 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.224 0.776 40 H 0.195 0.805 41 H 0.138 0.862 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.001 0.999 49 H 0.037 0.963 50 H 0.377 0.623 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.636 23.950 -9.470 37.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.199 4.199 4 C -0.033 4.033 5 N -0.191 5.191 6 C 0.045 3.955 7 C -0.260 4.260 8 C 0.025 3.975 9 C -0.316 4.316 10 C 0.365 3.635 11 O -0.436 6.436 12 N -0.335 5.335 13 C -0.009 4.009 14 C -0.155 4.155 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.085 0.915 18 C 0.020 3.980 19 N -0.396 5.396 20 C -0.354 4.354 21 H 0.064 0.936 22 C -0.255 4.255 23 N -0.641 5.641 24 Si 0.806 3.194 25 H -0.217 1.217 26 H -0.196 1.196 27 H -0.221 1.221 28 C 0.322 3.678 29 O -0.461 6.461 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.091 0.909 39 H 0.240 0.760 40 H 0.212 0.788 41 H 0.156 0.844 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.128 0.872 46 H 0.097 0.903 47 H 0.128 0.872 48 H 0.019 0.981 49 H 0.054 0.946 50 H 0.217 0.783 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.585 23.741 -9.325 36.128 hybrid contribution 0.269 -0.976 0.728 1.247 sum -25.316 22.765 -8.597 35.115 Atomic orbital electron populations 1.21949 0.92634 1.02195 1.03829 1.21381 0.97940 0.96943 0.96220 1.21735 1.00683 0.93986 1.03475 1.22440 1.02466 0.76539 1.01810 1.45589 1.17023 1.10881 1.45604 1.23086 0.84820 0.98569 0.89026 1.21052 1.04579 0.90921 1.09421 1.22136 0.89298 1.01357 0.84676 1.20763 1.00924 0.93525 1.16381 1.17822 0.79818 0.85512 0.80318 1.90697 1.57837 1.32377 1.62640 1.48424 1.51957 1.19816 1.13341 1.22359 1.00647 0.87075 0.90779 1.22818 0.98959 0.99535 0.94187 1.22632 1.00080 0.99580 0.92832 1.21982 0.90356 0.93169 0.92312 0.91483 1.21143 0.95965 0.92064 0.88827 1.43113 1.11959 1.56012 1.28558 1.19081 0.91808 1.21145 1.03361 0.93572 1.25339 1.00958 1.01893 0.97261 1.69897 1.33125 1.43605 1.17455 0.85078 0.80376 0.76333 0.77656 1.21722 1.19645 1.22091 1.16828 0.84620 0.85874 0.80466 1.90899 1.24236 1.80582 1.50357 0.89689 0.91884 0.92744 0.93320 0.93676 0.91451 0.90350 0.84687 0.90859 0.76000 0.78817 0.84378 0.91331 0.92367 0.89103 0.87165 0.90284 0.87209 0.98122 0.94575 0.78340 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.63 71.98 0.62 -0.18 16 2 C -0.11 -1.18 3.13 -10.79 -0.03 -1.21 16 3 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 4 C 0.09 1.19 4.83 86.38 0.42 1.60 16 5 N -0.48 -8.97 2.46 -649.67 -1.60 -10.57 16 6 C 0.17 1.70 8.20 83.56 0.69 2.38 16 7 C -0.24 -2.97 9.99 21.99 0.22 -2.76 16 8 C 0.05 1.18 9.89 22.83 0.23 1.41 16 9 C -0.31 -10.53 5.05 -19.79 -0.10 -10.63 16 10 C 0.58 25.28 6.84 86.56 0.59 25.87 16 11 O -0.56 -30.07 12.08 -4.17 -0.05 -30.12 16 12 N -0.60 -23.01 3.04 -792.27 -2.41 -25.42 16 13 C 0.11 3.28 5.19 86.85 0.45 3.73 16 14 C -0.12 -2.34 7.09 31.99 0.23 -2.11 16 15 C -0.11 -2.81 6.44 31.79 0.20 -2.60 16 16 C 0.13 4.70 3.08 45.34 0.14 4.84 16 17 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 18 C 0.15 7.20 5.61 86.38 0.48 7.69 16 19 N -0.75 -44.50 3.88 -343.45 -1.33 -45.83 16 20 C -0.22 -15.40 10.47 84.03 0.88 -14.52 16 21 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16 22 C -0.06 -4.46 5.50 84.86 0.47 -4.00 16 23 N -0.99 -71.94 13.97 21.65 0.30 -71.64 16 24 Si 0.98 57.68 26.61 68.60 1.83 59.51 16 25 H -0.29 -17.38 7.11 99.48 0.71 -16.67 16 26 H -0.27 -15.29 6.52 99.48 0.65 -14.64 16 27 H -0.29 -16.56 7.11 99.48 0.71 -15.86 16 28 C 0.52 16.28 6.57 85.16 0.56 16.84 16 29 O -0.58 -22.54 13.28 -4.93 -0.07 -22.61 16 30 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.32 6.34 -2.39 -0.02 0.31 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.14 0.65 8.00 -2.39 -0.02 0.64 16 38 H 0.07 1.50 7.38 -2.39 -0.02 1.48 16 39 H 0.22 -0.48 7.88 -2.91 -0.02 -0.50 16 40 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.07 1.80 7.25 -2.39 -0.02 1.79 16 43 H 0.06 1.96 6.74 -2.38 -0.02 1.94 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 2.00 7.85 -2.39 -0.02 1.98 16 47 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 50 H 0.38 22.46 3.20 -92.71 -0.30 22.16 16 51 H 0.26 17.59 8.31 -92.71 -0.77 16.82 16 Total: -1.00 -105.97 396.48 3.94 -102.03 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.56 Total: 18.88 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.70 Total: 25.77 kcal Atomic # 7 Polarization: -148.42 SS G_CDS: -5.04 Total: -153.46 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.12 Total: -52.73 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 1.83 Total: 59.51 kcal Total: -105.97 3.94 -102.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277956805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.065 kcal (2) G-P(sol) polarization free energy of solvation -105.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds