Wall clock time and date at job start Wed Apr 1 2020 04:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47068 * 2 1 4 4 C 1.53000 * 109.47068 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46832 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47628 * 54.99970 * 5 4 3 7 7 C 1.53009 * 109.46913 * 175.00014 * 5 4 3 8 8 N 1.46505 * 109.46976 * 174.99805 * 7 5 4 9 9 C 1.36933 * 119.99935 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99908 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00065 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99912 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00119 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47276 * 89.99448 * 13 11 9 15 15 H 1.48501 * 109.46977 * 209.99730 * 13 11 9 16 16 H 1.48505 * 109.46910 * 329.99234 * 13 11 9 17 17 N 1.46500 * 109.47289 * 294.99377 * 5 4 3 18 18 C 1.34783 * 119.99803 * 85.00301 * 17 5 4 19 19 O 1.21555 * 119.99585 * 0.02562 * 18 17 5 20 20 C 1.47853 * 120.00434 * 180.02562 * 18 17 5 21 21 C 1.39705 * 120.06903 * 359.97438 * 20 18 17 22 22 C 1.38058 * 120.14308 * 179.97438 * 21 20 18 23 23 C 1.38103 * 120.29878 * 359.97438 * 22 21 20 24 24 C 1.39662 * 120.14106 * 0.02562 * 23 22 21 25 25 C 1.47859 * 120.07654 * 179.97438 * 24 23 22 26 26 O 1.21543 * 120.00630 * 180.02562 * 25 24 23 27 27 N 1.34781 * 119.99383 * 0.02562 * 25 24 23 28 28 C 1.46507 * 119.99850 * 179.97438 * 27 25 24 29 29 C 1.39288 * 120.07681 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.46678 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46891 * 299.99842 * 1 2 3 32 32 H 1.08992 * 109.47268 * 60.00190 * 1 2 3 33 33 H 1.08995 * 109.47576 * 240.00097 * 2 1 3 34 34 H 1.09005 * 109.47051 * 119.99701 * 2 1 3 35 35 H 1.09001 * 109.47136 * 60.00307 * 3 2 1 36 36 H 1.08992 * 109.46921 * 300.00023 * 3 2 1 37 37 H 1.09001 * 109.47269 * 59.99771 * 4 3 2 38 38 H 1.09005 * 109.47051 * 299.99701 * 4 3 2 39 39 H 1.08997 * 109.46656 * 294.99626 * 7 5 4 40 40 H 1.08994 * 109.47194 * 54.99989 * 7 5 4 41 41 H 0.97003 * 119.99958 * 359.97438 * 8 7 5 42 42 H 0.97000 * 119.99938 * 180.02562 * 12 11 9 43 43 H 0.96992 * 120.00388 * 265.00915 * 17 5 4 44 44 H 1.08003 * 119.93246 * 359.70159 * 21 20 18 45 45 H 1.08000 * 119.85082 * 179.97438 * 22 21 20 46 46 H 1.07996 * 119.92731 * 180.02562 * 23 22 21 47 47 H 0.96996 * 120.00371 * 0.02562 * 27 25 24 48 48 H 1.09000 * 109.46691 * 59.99881 * 28 27 25 49 49 H 1.08999 * 109.47239 * 180.02562 * 28 27 25 50 50 H 1.09005 * 109.46745 * 300.00253 * 28 27 25 51 51 H 1.08001 * 120.14682 * 0.04805 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6450 3.4239 0.8430 7 6 5.6048 2.8868 0.1277 8 7 6.1030 4.2594 0.0085 9 6 7.4468 4.5095 0.0902 10 1 8.1394 3.6949 0.2430 11 6 7.9189 5.8100 -0.0222 12 7 7.0748 6.8027 -0.2079 13 14 9.7520 6.1513 0.0901 14 1 10.3527 6.0801 -1.2661 15 1 9.9694 7.5064 0.6573 16 1 10.3911 5.1387 0.9684 17 7 3.6930 3.5404 -1.2505 18 6 2.4757 4.1073 -1.3661 19 8 1.6991 4.0753 -0.4315 20 6 2.0848 4.7682 -2.6296 21 6 2.9764 4.8064 -3.7045 22 6 2.6128 5.4227 -4.8852 23 6 1.3668 6.0046 -5.0125 24 6 0.4660 5.9736 -3.9457 25 6 -0.8673 6.5976 -4.0833 26 8 -1.6501 6.5702 -3.1539 27 7 -1.2147 7.1968 -5.2396 28 6 -2.5361 7.8146 -5.3763 29 6 0.8270 5.3542 -2.7509 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9337 0.9286 -0.8891 38 1 3.9330 0.9289 0.8909 39 1 5.8893 2.4800 1.0980 40 1 6.0357 2.2739 -0.6639 41 1 5.4810 4.9909 -0.1291 42 1 7.4047 7.7115 -0.2868 43 1 4.3127 3.5662 -1.9962 44 1 3.9538 4.3567 -3.6103 45 1 3.3059 5.4498 -5.7131 46 1 1.0885 6.4847 -5.9390 47 1 -0.5902 7.2183 -5.9814 48 1 -2.6492 8.5996 -4.6285 49 1 -2.6347 8.2448 -6.3729 50 1 -3.3076 7.0587 -5.2292 51 1 0.1344 5.3281 -1.9227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282653122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:17 Heat of formation + Delta-G solvation = -49.648022 kcal Electronic energy + Delta-G solvation = -30551.286361 eV Core-core repulsion = 26450.286682 eV Total energy + Delta-G solvation = -4100.999680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.57784 -39.72441 -38.11906 -36.43053 -34.94723 -34.90020 -33.59849 -32.17660 -31.20303 -30.85072 -30.18345 -27.41042 -27.03117 -24.38523 -24.07694 -23.20069 -22.25167 -21.35230 -20.71076 -20.58217 -19.97586 -18.68452 -17.20276 -16.66462 -16.43870 -16.26378 -15.94284 -15.48158 -15.32788 -14.81268 -14.65325 -14.49527 -14.34483 -13.88805 -13.81596 -13.60696 -13.47473 -13.27669 -13.16965 -12.73778 -12.69827 -12.65813 -12.33821 -12.11771 -12.06300 -11.89702 -11.46157 -11.29316 -11.07463 -10.90822 -10.83556 -10.79224 -10.36095 -10.28846 -10.22491 -10.03293 -9.75151 -9.63231 -9.50147 -9.15811 -9.14279 -8.94497 -8.61948 -6.98939 -5.80377 -3.10562 0.52344 0.97844 2.50175 2.86930 3.17636 3.39562 3.43678 3.45992 3.47578 3.87876 4.39175 4.51826 4.54993 4.67705 4.86413 4.88264 4.95701 5.03845 5.10632 5.19192 5.22604 5.24874 5.39887 5.44225 5.49261 5.50486 5.53221 5.57519 5.74617 5.85684 5.91952 5.97293 6.00075 6.01720 6.04740 6.08435 6.12229 6.16785 6.18964 6.25322 6.32121 6.45333 6.50572 6.59505 6.65531 6.71031 6.94582 7.15240 7.65514 7.82936 7.94705 8.37090 8.50080 9.49030 10.04814 10.40263 11.41639 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.003230 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.597997 B = 8665.972134 C =11707.457943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.089 0.911 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.703 5.703 18 C 0.557 3.443 19 O -0.533 6.533 20 C -0.132 4.132 21 C -0.053 4.053 22 C -0.132 4.132 23 C -0.067 4.067 24 C -0.150 4.150 25 C 0.560 3.440 26 O -0.530 6.530 27 N -0.734 5.734 28 C 0.088 3.912 29 C -0.001 4.001 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.402 0.598 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.401 0.599 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 -5.999 -13.916 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.033 3.967 6 H 0.107 0.893 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.354 5.354 18 C 0.344 3.656 19 O -0.411 6.411 20 C -0.135 4.135 21 C -0.072 4.072 22 C -0.150 4.150 23 C -0.086 4.086 24 C -0.154 4.154 25 C 0.348 3.652 26 O -0.407 6.407 27 N -0.387 5.387 28 C -0.056 4.056 29 C -0.021 4.021 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.236 0.764 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.895 -6.053 -12.521 21.121 hybrid contribution 1.594 0.675 -0.821 1.915 sum -14.302 -5.378 -13.342 20.285 Atomic orbital electron populations 1.21744 0.96243 1.00805 1.01951 1.21567 0.95644 0.97711 1.01291 1.21681 0.94718 0.95377 1.03301 1.21978 0.96138 0.96193 1.02202 1.21343 0.96076 0.92490 0.86741 0.89286 1.20974 0.89200 0.89379 0.98853 1.42363 1.05425 1.02023 1.87853 1.19203 0.83620 0.92465 1.42126 0.91153 1.24753 0.97645 0.95674 1.02715 1.69671 1.32843 0.99006 1.56250 0.86199 0.85157 0.77300 0.77553 1.21746 1.21785 1.20769 1.45867 1.15606 1.56680 1.17246 1.18037 0.82217 0.78312 0.87028 1.90780 1.51454 1.59140 1.39709 1.20037 0.95474 1.02964 0.95047 1.21659 0.98637 0.94878 0.92027 1.21051 0.96496 0.99135 0.98289 1.21401 0.93407 0.96512 0.97306 1.19779 0.94858 1.04741 0.95979 1.18274 0.86678 0.77887 0.82344 1.90802 1.52365 1.58620 1.38925 1.45692 1.18292 1.58837 1.15888 1.21558 0.83871 0.98190 1.01973 1.21359 0.94674 0.89751 0.96333 0.93355 0.92756 0.92943 0.92658 0.92441 0.91451 0.91780 0.91963 0.91071 0.94803 0.95804 0.77959 0.93477 0.76217 0.84637 0.84599 0.85485 0.76408 0.91990 0.90551 0.92068 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.45 5.93 -26.73 -0.16 -1.61 16 3 C -0.11 -1.57 3.81 -26.73 -0.10 -1.67 16 4 C -0.13 -1.70 4.89 -26.73 -0.13 -1.83 16 5 C 0.14 2.26 2.42 -67.93 -0.16 2.10 16 6 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 7 C 0.14 2.72 5.82 -4.03 -0.02 2.70 16 8 N -0.73 -17.73 5.43 -59.90 -0.33 -18.06 16 9 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 10 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 13 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 N -0.70 -11.01 4.42 -54.74 -0.24 -11.25 16 18 C 0.56 9.25 6.34 -12.32 -0.08 9.17 16 19 O -0.53 -10.22 13.48 5.32 0.07 -10.14 16 20 C -0.13 -1.90 5.87 -105.02 -0.62 -2.52 16 21 C -0.05 -0.63 9.54 -39.10 -0.37 -1.00 16 22 C -0.13 -1.25 10.02 -39.70 -0.40 -1.65 16 23 C -0.07 -0.61 9.54 -39.10 -0.37 -0.98 16 24 C -0.15 -1.82 5.87 -105.02 -0.62 -2.43 16 25 C 0.56 7.01 7.77 -12.32 -0.10 6.91 16 26 O -0.53 -8.75 16.34 5.33 0.09 -8.66 16 27 N -0.73 -6.05 5.66 -68.03 -0.39 -6.43 16 28 C 0.09 0.59 10.70 59.85 0.64 1.24 16 29 C 0.00 -0.02 9.14 -38.78 -0.35 -0.38 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 36 H 0.06 0.98 5.65 -51.93 -0.29 0.69 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.39 10.06 7.33 -40.82 -0.30 9.76 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.40 5.86 6.63 -40.82 -0.27 5.59 16 44 H 0.14 1.46 6.39 -52.48 -0.34 1.12 16 45 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.13 0.66 6.39 -52.49 -0.34 0.32 16 47 H 0.40 2.02 6.85 -40.82 -0.28 1.74 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.15 2.43 7.23 -52.49 -0.38 2.05 16 LS Contribution 416.11 15.07 6.27 6.27 Total: -1.00 -34.65 416.11 -9.58 -44.23 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -8.04 Total: 14.39 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.72 Total: -0.40 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.23 Total: -62.61 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.16 Total: -18.81 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.65 -9.58 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282653122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.421 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds