Wall clock time and date at job start Wed Apr 1 2020 04:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47068 * 2 1 4 4 C 1.53000 * 109.47068 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46832 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47628 * 54.99970 * 5 4 3 7 7 C 1.53009 * 109.46913 * 175.00014 * 5 4 3 8 8 N 1.46505 * 109.46976 * 174.99805 * 7 5 4 9 9 C 1.36933 * 119.99935 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99908 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00065 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99912 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00119 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47276 * 89.99448 * 13 11 9 15 15 H 1.48501 * 109.46977 * 209.99730 * 13 11 9 16 16 H 1.48505 * 109.46910 * 329.99234 * 13 11 9 17 17 N 1.46500 * 109.47289 * 294.99377 * 5 4 3 18 18 C 1.34783 * 119.99803 * 85.00301 * 17 5 4 19 19 O 1.21555 * 119.99585 * 0.02562 * 18 17 5 20 20 C 1.47853 * 120.00434 * 180.02562 * 18 17 5 21 21 C 1.39705 * 120.06903 * 359.97438 * 20 18 17 22 22 C 1.38058 * 120.14308 * 179.97438 * 21 20 18 23 23 C 1.38103 * 120.29878 * 359.97438 * 22 21 20 24 24 C 1.39662 * 120.14106 * 0.02562 * 23 22 21 25 25 C 1.47859 * 120.07654 * 179.97438 * 24 23 22 26 26 O 1.21543 * 120.00630 * 180.02562 * 25 24 23 27 27 N 1.34781 * 119.99383 * 0.02562 * 25 24 23 28 28 C 1.46507 * 119.99850 * 179.97438 * 27 25 24 29 29 C 1.39288 * 120.07681 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.46678 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46891 * 299.99842 * 1 2 3 32 32 H 1.08992 * 109.47268 * 60.00190 * 1 2 3 33 33 H 1.08995 * 109.47576 * 240.00097 * 2 1 3 34 34 H 1.09005 * 109.47051 * 119.99701 * 2 1 3 35 35 H 1.09001 * 109.47136 * 60.00307 * 3 2 1 36 36 H 1.08992 * 109.46921 * 300.00023 * 3 2 1 37 37 H 1.09001 * 109.47269 * 59.99771 * 4 3 2 38 38 H 1.09005 * 109.47051 * 299.99701 * 4 3 2 39 39 H 1.08997 * 109.46656 * 294.99626 * 7 5 4 40 40 H 1.08994 * 109.47194 * 54.99989 * 7 5 4 41 41 H 0.97003 * 119.99958 * 359.97438 * 8 7 5 42 42 H 0.97000 * 119.99938 * 180.02562 * 12 11 9 43 43 H 0.96992 * 120.00388 * 265.00915 * 17 5 4 44 44 H 1.08003 * 119.93246 * 359.70159 * 21 20 18 45 45 H 1.08000 * 119.85082 * 179.97438 * 22 21 20 46 46 H 1.07996 * 119.92731 * 180.02562 * 23 22 21 47 47 H 0.96996 * 120.00371 * 0.02562 * 27 25 24 48 48 H 1.09000 * 109.46691 * 59.99881 * 28 27 25 49 49 H 1.08999 * 109.47239 * 180.02562 * 28 27 25 50 50 H 1.09005 * 109.46745 * 300.00253 * 28 27 25 51 51 H 1.08001 * 120.14682 * 0.04805 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6450 3.4239 0.8430 7 6 5.6048 2.8868 0.1277 8 7 6.1030 4.2594 0.0085 9 6 7.4468 4.5095 0.0902 10 1 8.1394 3.6949 0.2430 11 6 7.9189 5.8100 -0.0222 12 7 7.0748 6.8027 -0.2079 13 14 9.7520 6.1513 0.0901 14 1 10.3527 6.0801 -1.2661 15 1 9.9694 7.5064 0.6573 16 1 10.3911 5.1387 0.9684 17 7 3.6930 3.5404 -1.2505 18 6 2.4757 4.1073 -1.3661 19 8 1.6991 4.0753 -0.4315 20 6 2.0848 4.7682 -2.6296 21 6 2.9764 4.8064 -3.7045 22 6 2.6128 5.4227 -4.8852 23 6 1.3668 6.0046 -5.0125 24 6 0.4660 5.9736 -3.9457 25 6 -0.8673 6.5976 -4.0833 26 8 -1.6501 6.5702 -3.1539 27 7 -1.2147 7.1968 -5.2396 28 6 -2.5361 7.8146 -5.3763 29 6 0.8270 5.3542 -2.7509 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9337 0.9286 -0.8891 38 1 3.9330 0.9289 0.8909 39 1 5.8893 2.4800 1.0980 40 1 6.0357 2.2739 -0.6639 41 1 5.4810 4.9909 -0.1291 42 1 7.4047 7.7115 -0.2868 43 1 4.3127 3.5662 -1.9962 44 1 3.9538 4.3567 -3.6103 45 1 3.3059 5.4498 -5.7131 46 1 1.0885 6.4847 -5.9390 47 1 -0.5902 7.2183 -5.9814 48 1 -2.6492 8.5996 -4.6285 49 1 -2.6347 8.2448 -6.3729 50 1 -3.3076 7.0587 -5.2292 51 1 0.1344 5.3281 -1.9227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282653122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:16 Heat of formation + Delta-G solvation = -73.889654 kcal Electronic energy + Delta-G solvation = -30552.337557 eV Core-core repulsion = 26450.286682 eV Total energy + Delta-G solvation = -4102.050876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.64543 -40.86322 -39.14143 -37.81414 -36.26881 -35.81273 -35.18159 -33.45443 -32.44658 -32.13782 -31.37807 -28.76012 -27.90331 -25.95258 -25.19053 -24.16451 -23.76344 -22.37311 -21.84246 -21.78609 -21.13315 -19.75331 -19.08648 -17.79945 -17.58770 -17.22269 -16.92660 -16.74096 -16.41110 -16.31113 -15.88866 -15.59307 -15.48289 -15.19009 -15.12070 -14.80704 -14.70014 -14.49243 -14.21278 -14.09385 -13.88031 -13.52233 -13.32672 -13.20816 -13.16656 -12.93708 -12.86218 -12.78658 -12.51392 -12.44346 -12.12441 -12.02150 -11.87164 -11.84681 -11.42406 -11.38351 -11.25253 -10.99845 -10.88666 -10.37916 -10.15911 -10.01591 -9.88935 -9.00134 -7.92458 -5.22457 -0.40372 -0.02230 1.49239 1.50932 1.52721 1.59092 2.01084 2.06582 2.26911 2.57214 2.85058 3.41534 3.55549 3.59185 3.67994 3.80926 4.00590 4.01982 4.06958 4.09057 4.23876 4.29796 4.32632 4.35132 4.42520 4.54639 4.58586 4.60958 4.63003 4.83753 4.86498 4.91913 4.92964 4.94482 4.98146 5.06753 5.12726 5.12987 5.19606 5.22451 5.25203 5.31580 5.32190 5.39941 5.52322 5.56177 5.61111 5.72006 6.27468 6.44073 6.55565 7.11441 7.22259 7.35005 8.08131 8.32142 9.30306 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.003230 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.597997 B = 8665.972134 C =11707.457943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.056 0.944 7 C 0.146 3.854 8 N -0.744 5.744 9 C -0.242 4.242 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.972 3.028 14 H -0.283 1.283 15 H -0.302 1.302 16 H -0.271 1.271 17 N -0.697 5.697 18 C 0.553 3.447 19 O -0.571 6.571 20 C -0.154 4.154 21 C -0.056 4.056 22 C -0.121 4.121 23 C -0.044 4.044 24 C -0.159 4.159 25 C 0.554 3.446 26 O -0.584 6.584 27 N -0.713 5.713 28 C 0.082 3.918 29 C -0.026 4.026 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.408 0.592 44 H 0.145 0.855 45 H 0.177 0.823 46 H 0.178 0.822 47 H 0.420 0.580 48 H 0.048 0.952 49 H 0.120 0.880 50 H 0.052 0.948 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 -7.032 -17.292 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.154 4.154 5 C 0.041 3.959 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.387 5.387 9 C -0.374 4.374 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.802 3.198 14 H -0.210 1.210 15 H -0.229 1.229 16 H -0.196 1.196 17 N -0.348 5.348 18 C 0.341 3.659 19 O -0.452 6.452 20 C -0.157 4.157 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.063 4.063 24 C -0.162 4.162 25 C 0.342 3.658 26 O -0.466 6.466 27 N -0.365 5.365 28 C -0.061 4.061 29 C -0.046 4.046 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.246 0.754 44 H 0.163 0.837 45 H 0.195 0.805 46 H 0.195 0.805 47 H 0.259 0.741 48 H 0.067 0.933 49 H 0.138 0.862 50 H 0.070 0.930 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.445 -7.131 -15.958 22.675 hybrid contribution 1.091 0.991 0.175 1.484 sum -13.354 -6.140 -15.783 21.567 Atomic orbital electron populations 1.21745 0.96123 1.01834 1.01055 1.21535 0.95770 0.95888 1.02487 1.21557 0.95017 0.96708 1.01139 1.21909 0.95653 0.94100 1.03787 1.21174 0.94404 0.94120 0.86159 0.92559 1.21118 0.90532 0.86947 0.99460 1.42546 1.04550 1.03763 1.87811 1.19620 0.84912 0.92668 1.40158 0.90227 1.25544 1.01721 0.95705 1.03609 1.69840 1.34621 0.99027 1.58336 0.85158 0.80387 0.76556 0.77723 1.20984 1.22859 1.19613 1.45779 1.15474 1.56463 1.17064 1.18478 0.81949 0.77874 0.87606 1.90751 1.52528 1.60619 1.41292 1.19877 0.96257 1.04522 0.95046 1.21869 0.98398 0.95100 0.92147 1.21537 0.97096 0.97109 0.98124 1.21900 0.92138 0.94571 0.97664 1.19855 0.95555 1.04730 0.96053 1.18470 0.86440 0.77980 0.82892 1.90776 1.53825 1.60916 1.41041 1.45582 1.19160 1.56890 1.14881 1.21756 0.82715 0.97554 1.04081 1.21179 0.94582 0.91925 0.96893 0.91272 0.93702 0.93905 0.91278 0.91243 0.94117 0.93650 0.90001 0.89628 0.94463 0.93718 0.79457 0.94187 0.75439 0.83714 0.80520 0.80518 0.74134 0.93308 0.86177 0.92968 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.91 71.98 0.71 -2.63 16 2 C -0.12 -2.67 5.93 30.60 0.18 -2.49 16 3 C -0.11 -3.05 3.81 30.60 0.12 -2.93 16 4 C -0.12 -3.07 4.89 30.59 0.15 -2.92 16 5 C 0.15 4.92 2.42 44.99 0.11 5.03 16 6 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 7 C 0.15 5.44 5.82 86.38 0.50 5.94 16 8 N -0.74 -36.25 5.43 -343.44 -1.87 -38.11 16 9 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 10 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 12 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 13 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 N -0.70 -22.61 4.42 -445.38 -1.97 -24.57 16 18 C 0.55 19.75 6.34 86.79 0.55 20.30 16 19 O -0.57 -24.24 13.48 -3.89 -0.05 -24.29 16 20 C -0.15 -4.67 5.87 -20.13 -0.12 -4.79 16 21 C -0.06 -1.27 9.54 22.58 0.22 -1.05 16 22 C -0.12 -1.87 10.02 22.20 0.22 -1.64 16 23 C -0.04 -0.65 9.54 22.58 0.22 -0.43 16 24 C -0.16 -3.82 5.87 -20.12 -0.12 -3.94 16 25 C 0.55 13.98 7.77 86.79 0.67 14.65 16 26 O -0.58 -20.69 16.34 -3.85 -0.06 -20.76 16 27 N -0.71 -10.27 5.66 -487.44 -2.76 -13.03 16 28 C 0.08 0.97 10.70 127.77 1.37 2.34 16 29 C -0.03 -0.81 9.14 22.79 0.21 -0.60 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 36 H 0.04 1.47 5.65 -2.39 -0.01 1.46 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.37 20.01 7.33 -92.71 -0.68 19.33 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 43 H 0.41 11.95 6.63 -92.71 -0.61 11.34 16 44 H 0.15 2.92 6.39 -2.91 -0.02 2.90 16 45 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.18 0.78 6.39 -2.91 -0.02 0.76 16 47 H 0.42 2.53 6.85 -92.71 -0.64 1.90 16 48 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 49 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 51 H 0.11 4.28 7.23 -2.91 -0.02 4.26 16 Total: -1.00 -81.08 416.11 0.93 -80.15 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -0.97 Total: 42.60 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.30 Total: 9.09 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -6.31 Total: -133.83 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.12 Total: -45.05 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -81.08 0.93 -80.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282653122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.263 kcal (2) G-P(sol) polarization free energy of solvation -81.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds