Wall clock time and date at job start Wed Apr 1 2020 05:24:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.47127 * 2 1
4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3
5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1
6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1
7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2
8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4
9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6
10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7
11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7
12 12 N 1.46499 * 109.46962 * 180.02562 * 11 9 8
13 13 C 1.34777 * 119.99688 * 180.02562 * 12 11 9
14 14 O 1.21551 * 120.00599 * 359.97438 * 13 12 11
15 15 C 1.47853 * 119.99801 * 179.97438 * 13 12 11
16 16 C 1.39582 * 120.14233 * 359.72322 * 15 13 12
17 17 C 1.37955 * 119.84788 * 179.74563 * 16 15 13
18 18 C 1.38361 * 120.14967 * 0.53206 * 17 16 15
19 19 C 1.38355 * 120.28849 * 359.74076 * 18 17 16
20 20 C 1.37963 * 120.14836 * 359.97438 * 19 18 17
21 21 N 1.46498 * 109.47257 * 179.97438 * 4 2 1
22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2
23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4
24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4
25 25 N 1.31611 * 120.00081 * 180.02562 * 24 22 21
26 26 Si 1.86800 * 119.99814 * 0.02562 * 24 22 21
27 27 H 1.48501 * 109.47483 * 90.00178 * 26 24 22
28 28 H 1.48498 * 109.47011 * 210.00042 * 26 24 22
29 29 H 1.48502 * 109.47495 * 329.99664 * 26 24 22
30 30 H 1.09003 * 109.47062 * 300.00363 * 1 2 3
31 31 H 1.08996 * 109.47077 * 59.99864 * 1 2 3
32 32 H 1.08996 * 109.47248 * 180.02562 * 1 2 3
33 33 H 1.08995 * 109.46945 * 239.99919 * 2 1 3
34 34 H 1.09003 * 109.47146 * 179.97438 * 3 2 1
35 35 H 1.08996 * 109.47253 * 300.00028 * 3 2 1
36 36 H 1.08995 * 109.47275 * 60.00121 * 3 2 1
37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2
38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2
39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4
40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4
41 41 H 0.96997 * 120.00090 * 0.02562 * 8 7 6
42 42 H 1.09002 * 109.47320 * 300.00084 * 11 9 8
43 43 H 1.08998 * 109.47063 * 60.00511 * 11 9 8
44 44 H 0.97002 * 120.00258 * 359.97438 * 12 11 9
45 45 H 1.07996 * 120.07417 * 0.02562 * 16 15 13
46 46 H 1.08007 * 119.92540 * 180.28000 * 17 16 15
47 47 H 1.07994 * 119.85806 * 179.72125 * 18 17 16
48 48 H 1.07999 * 119.92870 * 179.97438 * 19 18 17
49 49 H 1.07996 * 120.07247 * 179.97438 * 20 19 18
50 50 H 0.97001 * 120.00384 * 265.00562 * 21 4 2
51 51 H 0.97008 * 120.00329 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6767 -0.2075 2.1392
6 6 1.5299 -2.1638 1.2492
7 6 1.9348 -2.8478 2.5566
8 7 1.4459 -4.2289 2.5568
9 6 1.6867 -5.0288 3.6145
10 8 2.3078 -4.6052 4.5662
11 6 1.1843 -6.4495 3.6145
12 7 1.5718 -7.1045 4.8663
13 6 1.2285 -8.3886 5.0892
14 8 0.5971 -9.0032 4.2520
15 6 1.6201 -9.0498 6.3524
16 6 2.3502 -8.3488 7.3135
17 6 2.7079 -8.9700 8.4921
18 6 2.3540 -10.2884 8.7180
19 6 1.6352 -10.9907 7.7670
20 6 1.2661 -10.3795 6.5865
21 7 3.5050 -0.7218 1.2490
22 6 4.1901 0.3552 1.7447
23 1 3.6505 1.2032 2.1400
24 6 5.5782 0.3572 1.7392
25 7 6.2368 1.3921 2.2161
26 14 6.5116 -1.1091 1.0549
27 1 6.7531 -0.9087 -0.3966
28 1 7.8121 -1.2407 1.7595
29 1 5.7116 -2.3437 1.2578
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 1.8933 -0.5138 -0.8899
34 1 3.1300 1.4425 0.0005
35 1 1.6767 1.9563 -0.8899
36 1 1.6767 1.9563 0.8899
37 1 0.4437 -2.1650 1.1597
38 1 1.9645 -2.7028 0.4074
39 1 3.0210 -2.8465 2.6461
40 1 1.5001 -2.3088 3.3983
41 1 0.9495 -4.5677 1.7955
42 1 0.0979 -6.4508 3.5253
43 1 1.6186 -6.9885 2.7725
44 1 2.0760 -6.6142 5.5343
45 1 2.6306 -7.3209 7.1367
46 1 3.2689 -8.4273 9.2386
47 1 2.6403 -10.7715 9.6404
48 1 1.3624 -12.0196 7.9491
49 1 0.7055 -10.9289 5.8448
50 1 3.9897 -1.4834 0.8939
51 1 7.2068 1.3934 2.2126
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001283462892.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:24:39
Heat of formation + Delta-G solvation = -44.762094 kcal
Electronic energy + Delta-G solvation = -29433.310078 eV
Core-core repulsion = 25332.522268 eV
Total energy + Delta-G solvation = -4100.787810 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.68738 -39.73133 -38.49028 -37.67051 -35.16370 -34.65750 -33.10488 -31.92425
-31.40835 -31.31892 -30.17421 -28.15312 -26.38623 -25.31657 -23.92800 -22.88346
-22.57367 -21.23327 -20.82446 -20.77768 -19.46792 -18.82313 -17.50597 -16.95799
-16.75863 -16.24016 -16.15549 -15.72732 -15.43100 -15.04171 -14.92373 -14.80779
-14.10577 -14.08131 -14.05856 -13.89702 -13.70493 -13.41659 -13.18485 -13.14005
-12.74503 -12.52043 -12.31466 -12.08906 -11.91790 -11.67408 -11.50675 -11.43387
-11.07024 -10.88567 -10.80212 -10.51312 -10.35751 -10.29664 -10.17199 -10.06592
-9.87997 -9.60573 -9.44776 -9.41416 -9.32036 -9.09431 -8.87956 -7.27225
-5.77154 -3.12068 0.44916 0.95137 2.40039 2.52696 2.53612 3.22999
3.36598 3.38856 3.45566 3.49207 4.28072 4.40536 4.50154 4.52919
4.58502 4.72317 4.95166 4.99452 5.02037 5.03890 5.07824 5.10020
5.34874 5.38604 5.43399 5.54622 5.56342 5.60042 5.74827 5.85187
5.87638 5.92980 5.96861 5.98167 6.02532 6.06389 6.19626 6.20902
6.33973 6.37446 6.45089 6.45891 6.57139 6.61661 6.74631 7.02093
7.13668 7.32125 7.35238 7.82883 7.99134 8.01284 8.41386 9.19681
9.92225 10.11267 11.40858
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013032 B = 0.001981 C = 0.001797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2148.117701 B =14130.752776 C =15575.871606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.111 4.111
3 C -0.141 4.141
4 C 0.190 3.810
5 H 0.058 0.942
6 C -0.140 4.140
7 C 0.120 3.880
8 N -0.722 5.722
9 C 0.504 3.496
10 O -0.535 6.535
11 C 0.100 3.900
12 N -0.713 5.713
13 C 0.562 3.438
14 O -0.540 6.540
15 C -0.135 4.135
16 C -0.084 4.084
17 C -0.127 4.127
18 C -0.094 4.094
19 C -0.130 4.130
20 C -0.060 4.060
21 N -0.746 5.746
22 C -0.237 4.237
23 H 0.094 0.906
24 C 0.004 3.996
25 N -0.933 5.933
26 Si 0.881 3.119
27 H -0.286 1.286
28 H -0.293 1.293
29 H -0.278 1.278
30 H 0.050 0.950
31 H 0.044 0.956
32 H 0.049 0.951
33 H 0.058 0.942
34 H 0.089 0.911
35 H 0.029 0.971
36 H 0.043 0.957
37 H 0.072 0.928
38 H 0.065 0.935
39 H 0.081 0.919
40 H 0.070 0.930
41 H 0.400 0.600
42 H 0.101 0.899
43 H 0.101 0.899
44 H 0.413 0.587
45 H 0.130 0.870
46 H 0.131 0.869
47 H 0.127 0.873
48 H 0.130 0.870
49 H 0.136 0.864
50 H 0.360 0.640
51 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.386 -21.345 6.501 26.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.132 4.132
3 C -0.198 4.198
4 C 0.080 3.920
5 H 0.076 0.924
6 C -0.179 4.179
7 C -0.002 4.002
8 N -0.373 5.373
9 C 0.288 3.712
10 O -0.412 6.412
11 C -0.027 4.027
12 N -0.369 5.369
13 C 0.350 3.650
14 O -0.418 6.418
15 C -0.138 4.138
16 C -0.102 4.102
17 C -0.145 4.145
18 C -0.112 4.112
19 C -0.148 4.148
20 C -0.078 4.078
21 N -0.389 5.389
22 C -0.366 4.366
23 H 0.111 0.889
24 C -0.191 4.191
25 N -0.580 5.580
26 Si 0.712 3.288
27 H -0.213 1.213
28 H -0.219 1.219
29 H -0.205 1.205
30 H 0.069 0.931
31 H 0.064 0.936
32 H 0.067 0.933
33 H 0.077 0.923
34 H 0.107 0.893
35 H 0.048 0.952
36 H 0.062 0.938
37 H 0.091 0.909
38 H 0.083 0.917
39 H 0.099 0.901
40 H 0.088 0.912
41 H 0.234 0.766
42 H 0.119 0.881
43 H 0.119 0.881
44 H 0.252 0.748
45 H 0.148 0.852
46 H 0.149 0.851
47 H 0.145 0.855
48 H 0.148 0.852
49 H 0.154 0.846
50 H 0.193 0.807
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -13.291 -21.192 6.702 25.897
hybrid contribution 0.855 -0.797 -0.639 1.333
sum -12.436 -21.989 6.062 25.979
Atomic orbital electron populations
1.21933 0.96882 1.00621 1.01034 1.21743 0.93548 0.98015 0.99888
1.21839 1.04493 0.94418 0.99071 1.20167 0.84707 0.91098 0.96001
0.92389 1.22189 1.01128 0.98200 0.96347 1.21517 1.00995 0.79050
0.98652 1.46019 1.57430 1.13976 1.19900 1.20427 0.80193 0.87367
0.83180 1.90738 1.40409 1.75496 1.34511 1.21093 1.02018 0.90935
0.88704 1.45623 1.58074 1.12646 1.20518 1.18261 0.79111 0.81047
0.86618 1.90774 1.40163 1.64454 1.46398 1.19880 1.03293 0.95689
0.94986 1.21442 0.95665 0.99858 0.93271 1.21170 1.00646 0.95283
0.97373 1.21423 0.96288 0.94452 0.99060 1.21182 0.99311 1.00454
0.93874 1.21292 0.96523 0.93072 0.96959 1.42827 1.00509 1.20326
1.75226 1.19044 0.89261 0.95837 1.32490 0.88855 1.24656 0.96244
0.97062 1.01166 1.69687 1.06974 1.29719 1.51652 0.86610 0.79929
0.83494 0.78785 1.21291 1.21909 1.20465 0.93091 0.93646 0.93250
0.92307 0.89261 0.95178 0.93830 0.90908 0.91669 0.90052 0.91199
0.76561 0.88142 0.88147 0.74776 0.85222 0.85138 0.85475 0.85234
0.84585 0.80742 0.93116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 8.85 37.16 0.33 -1.51 16
2 C -0.11 -1.74 2.69 -90.62 -0.24 -1.99 16
3 C -0.14 -2.53 8.26 37.16 0.31 -2.23 16
4 C 0.19 3.24 2.02 -67.93 -0.14 3.10 16
5 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16
6 C -0.14 -1.83 4.65 -26.73 -0.12 -1.95 16
7 C 0.12 1.72 5.56 -4.04 -0.02 1.70 16
8 N -0.72 -7.94 5.56 -60.30 -0.33 -8.28 16
9 C 0.50 6.18 7.90 -10.99 -0.09 6.09 16
10 O -0.53 -8.69 15.67 5.56 0.09 -8.60 16
11 C 0.10 0.97 6.15 -5.20 -0.03 0.94 16
12 N -0.71 -7.58 5.48 -62.43 -0.34 -7.92 16
13 C 0.56 6.50 7.77 -12.33 -0.10 6.41 16
14 O -0.54 -7.60 16.35 5.32 0.09 -7.51 16
15 C -0.14 -1.34 5.87 -104.96 -0.62 -1.96 16
16 C -0.08 -0.70 9.54 -39.18 -0.37 -1.08 16
17 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16
18 C -0.09 -0.60 10.04 -39.49 -0.40 -0.99 16
19 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16
20 C -0.06 -0.53 9.60 -39.18 -0.38 -0.90 16
21 N -0.75 -16.06 4.26 -53.43 -0.23 -16.29 16
22 C -0.24 -6.21 8.04 -15.06 -0.12 -6.33 16
23 H 0.09 2.64 7.61 -52.49 -0.40 2.24 16
24 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16
25 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16
26 Si 0.88 21.76 27.74 -169.99 -4.71 17.05 16
27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16
29 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16
30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
32 H 0.05 0.53 6.32 -51.93 -0.33 0.20 16
33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.09 1.94 5.99 -51.93 -0.31 1.63 16
35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16
36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
37 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16
38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
39 H 0.08 1.46 7.75 -51.94 -0.40 1.05 16
40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
41 H 0.40 3.04 8.47 -40.82 -0.35 2.69 16
42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
44 H 0.41 4.29 5.47 -40.82 -0.22 4.07 16
45 H 0.13 0.97 6.41 -52.49 -0.34 0.63 16
46 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16
47 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16
48 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16
49 H 0.14 1.18 7.65 -52.49 -0.40 0.77 16
50 H 0.36 7.78 5.66 -40.82 -0.23 7.55 16
51 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16
LS Contribution 413.61 15.07 6.23 6.23
Total: -1.00 -34.05 413.61 -9.28 -43.33
By element:
Atomic # 1 Polarization: 21.03 SS G_CDS: -7.96 Total: 13.07 kcal
Atomic # 6 Polarization: -0.36 SS G_CDS: -2.88 Total: -3.25 kcal
Atomic # 7 Polarization: -60.19 SS G_CDS: -0.13 Total: -60.32 kcal
Atomic # 8 Polarization: -16.28 SS G_CDS: 0.17 Total: -16.11 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal
Total LS contribution 6.23 Total: 6.23 kcal
Total: -34.05 -9.28 -43.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001283462892.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.432 kcal
(2) G-P(sol) polarization free energy of solvation -34.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds