Wall clock time and date at job start Wed Apr 1 2020 05:24:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.47127 * 2 1
4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3
5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1
6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1
7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2
8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4
9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6
10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7
11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7
12 12 N 1.46499 * 109.46962 * 180.02562 * 11 9 8
13 13 C 1.34777 * 119.99688 * 180.02562 * 12 11 9
14 14 O 1.21551 * 120.00599 * 359.97438 * 13 12 11
15 15 C 1.47853 * 119.99801 * 179.97438 * 13 12 11
16 16 C 1.39582 * 120.14233 * 359.72322 * 15 13 12
17 17 C 1.37955 * 119.84788 * 179.74563 * 16 15 13
18 18 C 1.38361 * 120.14967 * 0.53206 * 17 16 15
19 19 C 1.38355 * 120.28849 * 359.74076 * 18 17 16
20 20 C 1.37963 * 120.14836 * 359.97438 * 19 18 17
21 21 N 1.46498 * 109.47257 * 179.97438 * 4 2 1
22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2
23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4
24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4
25 25 N 1.31611 * 120.00081 * 180.02562 * 24 22 21
26 26 Si 1.86800 * 119.99814 * 0.02562 * 24 22 21
27 27 H 1.48501 * 109.47483 * 90.00178 * 26 24 22
28 28 H 1.48498 * 109.47011 * 210.00042 * 26 24 22
29 29 H 1.48502 * 109.47495 * 329.99664 * 26 24 22
30 30 H 1.09003 * 109.47062 * 300.00363 * 1 2 3
31 31 H 1.08996 * 109.47077 * 59.99864 * 1 2 3
32 32 H 1.08996 * 109.47248 * 180.02562 * 1 2 3
33 33 H 1.08995 * 109.46945 * 239.99919 * 2 1 3
34 34 H 1.09003 * 109.47146 * 179.97438 * 3 2 1
35 35 H 1.08996 * 109.47253 * 300.00028 * 3 2 1
36 36 H 1.08995 * 109.47275 * 60.00121 * 3 2 1
37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2
38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2
39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4
40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4
41 41 H 0.96997 * 120.00090 * 0.02562 * 8 7 6
42 42 H 1.09002 * 109.47320 * 300.00084 * 11 9 8
43 43 H 1.08998 * 109.47063 * 60.00511 * 11 9 8
44 44 H 0.97002 * 120.00258 * 359.97438 * 12 11 9
45 45 H 1.07996 * 120.07417 * 0.02562 * 16 15 13
46 46 H 1.08007 * 119.92540 * 180.28000 * 17 16 15
47 47 H 1.07994 * 119.85806 * 179.72125 * 18 17 16
48 48 H 1.07999 * 119.92870 * 179.97438 * 19 18 17
49 49 H 1.07996 * 120.07247 * 179.97438 * 20 19 18
50 50 H 0.97001 * 120.00384 * 265.00562 * 21 4 2
51 51 H 0.97008 * 120.00329 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6767 -0.2075 2.1392
6 6 1.5299 -2.1638 1.2492
7 6 1.9348 -2.8478 2.5566
8 7 1.4459 -4.2289 2.5568
9 6 1.6867 -5.0288 3.6145
10 8 2.3078 -4.6052 4.5662
11 6 1.1843 -6.4495 3.6145
12 7 1.5718 -7.1045 4.8663
13 6 1.2285 -8.3886 5.0892
14 8 0.5971 -9.0032 4.2520
15 6 1.6201 -9.0498 6.3524
16 6 2.3502 -8.3488 7.3135
17 6 2.7079 -8.9700 8.4921
18 6 2.3540 -10.2884 8.7180
19 6 1.6352 -10.9907 7.7670
20 6 1.2661 -10.3795 6.5865
21 7 3.5050 -0.7218 1.2490
22 6 4.1901 0.3552 1.7447
23 1 3.6505 1.2032 2.1400
24 6 5.5782 0.3572 1.7392
25 7 6.2368 1.3921 2.2161
26 14 6.5116 -1.1091 1.0549
27 1 6.7531 -0.9087 -0.3966
28 1 7.8121 -1.2407 1.7595
29 1 5.7116 -2.3437 1.2578
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 1.8933 -0.5138 -0.8899
34 1 3.1300 1.4425 0.0005
35 1 1.6767 1.9563 -0.8899
36 1 1.6767 1.9563 0.8899
37 1 0.4437 -2.1650 1.1597
38 1 1.9645 -2.7028 0.4074
39 1 3.0210 -2.8465 2.6461
40 1 1.5001 -2.3088 3.3983
41 1 0.9495 -4.5677 1.7955
42 1 0.0979 -6.4508 3.5253
43 1 1.6186 -6.9885 2.7725
44 1 2.0760 -6.6142 5.5343
45 1 2.6306 -7.3209 7.1367
46 1 3.2689 -8.4273 9.2386
47 1 2.6403 -10.7715 9.6404
48 1 1.3624 -12.0196 7.9491
49 1 0.7055 -10.9289 5.8448
50 1 3.9897 -1.4834 0.8939
51 1 7.2068 1.3934 2.2126
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001283462892.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:24:38
Heat of formation + Delta-G solvation = -69.061524 kcal
Electronic energy + Delta-G solvation = -29434.363780 eV
Core-core repulsion = 25332.522268 eV
Total energy + Delta-G solvation = -4101.841512 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.53500 -40.65813 -39.25754 -39.01634 -36.23781 -35.63371 -34.92255 -33.05512
-32.49065 -31.90741 -31.66668 -29.12542 -27.63394 -26.71202 -24.76628 -24.23222
-23.41505 -22.52483 -21.80545 -21.56901 -20.92258 -19.66111 -19.33248 -17.79625
-17.63797 -17.23277 -16.96629 -16.89357 -16.54261 -16.09527 -15.88338 -15.81248
-15.47160 -15.22071 -15.15987 -14.97349 -14.65031 -14.57383 -14.38331 -14.09397
-14.00036 -13.73189 -13.45682 -13.29140 -12.95793 -12.91857 -12.67701 -12.64105
-12.48775 -12.21434 -12.04843 -12.01309 -11.85852 -11.72900 -11.43817 -11.28247
-11.23292 -11.09318 -10.81152 -10.44973 -10.16667 -9.98150 -9.92764 -9.21009
-7.95488 -5.25493 -0.18906 0.38759 1.36595 1.39620 1.42842 1.46110
1.66974 1.76089 2.33501 2.51523 2.86755 3.35867 3.49908 3.65035
3.66565 3.88385 3.89936 3.99530 4.13257 4.21491 4.22838 4.28839
4.29544 4.38997 4.44370 4.46389 4.50776 4.67393 4.78752 4.80390
4.83178 4.96128 5.01423 5.03509 5.09003 5.14578 5.21646 5.25763
5.31346 5.33861 5.39752 5.42557 5.44630 5.48860 5.68891 5.78182
5.88773 5.92145 6.28414 6.30027 6.42268 6.97958 7.10308 7.15856
7.92697 8.09687 9.26318
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013032 B = 0.001981 C = 0.001797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2148.117701 B =14130.752776 C =15575.871606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.105 4.105
3 C -0.138 4.138
4 C 0.181 3.819
5 H 0.041 0.959
6 C -0.125 4.125
7 C 0.128 3.872
8 N -0.705 5.705
9 C 0.505 3.495
10 O -0.579 6.579
11 C 0.105 3.895
12 N -0.713 5.713
13 C 0.561 3.439
14 O -0.571 6.571
15 C -0.159 4.159
16 C -0.093 4.093
17 C -0.132 4.132
18 C -0.089 4.089
19 C -0.130 4.130
20 C -0.074 4.074
21 N -0.748 5.748
22 C -0.199 4.199
23 H 0.062 0.938
24 C -0.071 4.071
25 N -0.987 5.987
26 Si 0.945 3.055
27 H -0.281 1.281
28 H -0.306 1.306
29 H -0.255 1.255
30 H 0.048 0.952
31 H 0.057 0.943
32 H 0.077 0.923
33 H 0.065 0.935
34 H 0.043 0.957
35 H 0.050 0.950
36 H 0.032 0.968
37 H 0.111 0.889
38 H 0.082 0.918
39 H 0.043 0.957
40 H 0.054 0.946
41 H 0.421 0.579
42 H 0.121 0.879
43 H 0.115 0.885
44 H 0.413 0.587
45 H 0.132 0.868
46 H 0.150 0.850
47 H 0.157 0.843
48 H 0.155 0.845
49 H 0.131 0.869
50 H 0.363 0.637
51 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.499 -24.301 5.860 29.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.126 4.126
3 C -0.196 4.196
4 C 0.073 3.927
5 H 0.059 0.941
6 C -0.163 4.163
7 C 0.004 3.996
8 N -0.358 5.358
9 C 0.291 3.709
10 O -0.459 6.459
11 C -0.021 4.021
12 N -0.368 5.368
13 C 0.350 3.650
14 O -0.452 6.452
15 C -0.162 4.162
16 C -0.111 4.111
17 C -0.150 4.150
18 C -0.107 4.107
19 C -0.147 4.147
20 C -0.093 4.093
21 N -0.391 5.391
22 C -0.330 4.330
23 H 0.080 0.920
24 C -0.261 4.261
25 N -0.639 5.639
26 Si 0.775 3.225
27 H -0.208 1.208
28 H -0.234 1.234
29 H -0.180 1.180
30 H 0.067 0.933
31 H 0.076 0.924
32 H 0.096 0.904
33 H 0.083 0.917
34 H 0.062 0.938
35 H 0.069 0.931
36 H 0.051 0.949
37 H 0.129 0.871
38 H 0.100 0.900
39 H 0.061 0.939
40 H 0.073 0.927
41 H 0.259 0.741
42 H 0.138 0.862
43 H 0.133 0.867
44 H 0.253 0.747
45 H 0.150 0.850
46 H 0.168 0.832
47 H 0.175 0.825
48 H 0.172 0.828
49 H 0.149 0.851
50 H 0.196 0.804
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -15.489 -24.186 6.009 29.342
hybrid contribution 1.402 0.178 -0.370 1.460
sum -14.087 -24.008 5.639 28.402
Atomic orbital electron populations
1.21860 0.93546 1.02674 1.01619 1.21631 0.96239 0.95792 0.98924
1.21761 1.01458 0.96764 0.99577 1.20437 0.81966 0.94186 0.96090
0.94135 1.22063 1.03319 0.94905 0.95982 1.21206 0.98610 0.80763
0.98999 1.45764 1.56988 1.12576 1.20429 1.20856 0.79270 0.88226
0.82560 1.90726 1.42432 1.76478 1.36248 1.21166 1.03142 0.88977
0.88848 1.45678 1.57769 1.12515 1.20827 1.18544 0.78500 0.81003
0.86909 1.90742 1.41811 1.65111 1.47535 1.19900 1.04970 0.96409
0.94883 1.21558 0.95767 1.00106 0.93707 1.21491 1.00442 0.95900
0.97149 1.21818 0.94964 0.94107 0.99825 1.21497 0.98644 1.01595
0.93000 1.21411 0.97069 0.92888 0.97912 1.42856 1.02596 1.18845
1.74783 1.18963 0.89102 0.95663 1.29320 0.92011 1.25378 0.97513
0.99975 1.03275 1.69867 1.06733 1.32357 1.54990 0.85545 0.78025
0.81114 0.77865 1.20782 1.23400 1.17993 0.93253 0.92440 0.90443
0.91702 0.93757 0.93139 0.94888 0.87118 0.89983 0.93898 0.92712
0.74066 0.86152 0.86683 0.74728 0.85023 0.83180 0.82544 0.82767
0.85139 0.80433 0.93858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.93 8.85 71.98 0.64 -2.29 16
2 C -0.10 -3.06 2.69 -10.79 -0.03 -3.09 16
3 C -0.14 -4.94 8.26 71.98 0.59 -4.35 16
4 C 0.18 5.92 2.02 44.99 0.09 6.01 16
5 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16
6 C -0.12 -2.83 4.65 30.60 0.14 -2.69 16
7 C 0.13 3.46 5.56 86.38 0.48 3.94 16
8 N -0.71 -13.77 5.56 -463.07 -2.57 -16.34 16
9 C 0.50 11.70 7.90 87.66 0.69 12.39 16
10 O -0.58 -18.80 15.67 -3.04 -0.05 -18.85 16
11 C 0.11 1.87 6.15 85.63 0.53 2.39 16
12 N -0.71 -14.80 5.48 -469.71 -2.57 -17.37 16
13 C 0.56 12.92 7.77 86.79 0.67 13.59 16
14 O -0.57 -15.98 16.35 -3.88 -0.06 -16.05 16
15 C -0.16 -3.11 5.87 -20.09 -0.12 -3.23 16
16 C -0.09 -1.51 9.54 22.53 0.21 -1.29 16
17 C -0.13 -1.62 10.03 22.23 0.22 -1.40 16
18 C -0.09 -0.90 10.04 22.33 0.22 -0.68 16
19 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16
20 C -0.07 -1.27 9.60 22.53 0.22 -1.05 16
21 N -0.75 -32.01 4.26 -322.94 -1.38 -33.39 16
22 C -0.20 -10.79 8.04 84.03 0.68 -10.11 16
23 H 0.06 3.69 7.61 -2.91 -0.02 3.67 16
24 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16
25 N -0.99 -63.49 13.97 21.65 0.30 -63.19 16
26 Si 0.95 45.92 27.74 68.60 1.90 47.82 16
27 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16
28 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16
29 H -0.26 -11.21 6.52 99.48 0.65 -10.57 16
30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.08 1.22 6.32 -2.39 -0.02 1.21 16
33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
34 H 0.04 1.97 5.99 -2.39 -0.01 1.96 16
35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
37 H 0.11 1.76 6.17 -2.39 -0.01 1.74 16
38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
39 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16
40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
41 H 0.42 4.73 8.47 -92.71 -0.79 3.94 16
42 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
43 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16
44 H 0.41 8.62 5.47 -92.71 -0.51 8.11 16
45 H 0.13 1.97 6.41 -2.91 -0.02 1.95 16
46 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16
47 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16
48 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16
49 H 0.13 2.28 7.65 -2.91 -0.02 2.26 16
50 H 0.36 15.19 5.66 -92.71 -0.52 14.67 16
51 H 0.25 15.69 8.31 -92.70 -0.77 14.92 16
Total: -1.00 -79.25 413.61 0.59 -78.66
By element:
Atomic # 1 Polarization: 36.43 SS G_CDS: -0.92 Total: 35.52 kcal
Atomic # 6 Polarization: -2.76 SS G_CDS: 5.94 Total: 3.18 kcal
Atomic # 7 Polarization: -124.07 SS G_CDS: -6.22 Total: -130.29 kcal
Atomic # 8 Polarization: -34.78 SS G_CDS: -0.11 Total: -34.89 kcal
Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal
Total: -79.25 0.59 -78.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001283462892.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.602 kcal
(2) G-P(sol) polarization free energy of solvation -79.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.664 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds