Wall clock time and date at job start Wed Apr 1 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 7 7 N 1.46500 * 109.47520 * 185.00200 * 6 4 2 8 8 C 1.34772 * 120.00336 * 180.02562 * 7 6 4 9 9 O 1.21290 * 119.99809 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00153 * 180.02562 * 8 7 6 11 11 N 1.46499 * 109.47131 * 179.97438 * 10 8 7 12 12 C 1.34782 * 119.99850 * 179.97438 * 11 10 8 13 13 O 1.21280 * 119.99931 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99901 * 180.02562 * 12 11 10 15 15 C 1.50699 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.38237 * 119.99813 * 269.72667 * 15 14 12 17 17 C 1.38236 * 119.99653 * 179.76406 * 16 15 14 18 18 C 1.38234 * 119.99980 * 0.50848 * 17 16 15 19 19 C 1.38236 * 120.00225 * 359.74411 * 18 17 16 20 20 C 1.38234 * 119.99959 * 89.99922 * 15 14 12 21 21 N 1.46500 * 109.47023 * 60.00568 * 4 2 1 22 22 C 1.36931 * 119.99971 * 274.99678 * 21 4 2 23 23 H 1.08005 * 120.00425 * 359.97438 * 22 21 4 24 24 C 1.38812 * 120.00390 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99556 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00553 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47196 * 60.00050 * 26 24 22 28 28 H 1.48500 * 109.47547 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46942 * 299.99859 * 26 24 22 30 30 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 31 31 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 32 32 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 36 36 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 37 37 H 1.09004 * 109.47346 * 305.00346 * 6 4 2 38 38 H 1.09002 * 109.47196 * 65.00121 * 6 4 2 39 39 H 0.96995 * 119.99638 * 359.97438 * 7 6 4 40 40 H 1.08994 * 109.47002 * 300.00139 * 10 8 7 41 41 H 1.09002 * 109.47102 * 59.99591 * 10 8 7 42 42 H 0.97003 * 120.00477 * 0.02562 * 11 10 8 43 43 H 1.09003 * 109.46650 * 300.00013 * 14 12 11 44 44 H 1.09001 * 109.46886 * 59.99827 * 14 12 11 45 45 H 1.08004 * 119.99996 * 359.97438 * 16 15 14 46 46 H 1.07995 * 120.00082 * 180.23024 * 17 16 15 47 47 H 1.08002 * 119.99958 * 179.72177 * 18 17 16 48 48 H 1.08001 * 120.00103 * 179.97438 * 19 18 17 49 49 H 1.08005 * 120.00239 * 359.97438 * 20 15 14 50 50 H 0.97004 * 120.00223 * 94.99655 * 21 4 2 51 51 H 0.96997 * 119.99679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2497 7 7 4.0584 -1.5128 2.3811 8 6 5.3834 -1.6532 2.5834 9 8 6.1715 -1.1241 1.8284 10 6 5.8858 -2.4686 3.7469 11 7 7.3508 -2.4680 3.7473 12 6 8.0247 -3.1373 4.7035 13 8 7.4183 -3.7405 5.5634 14 6 9.5317 -3.1362 4.7043 15 6 10.0341 -3.9517 5.8677 16 6 10.2688 -3.3444 7.0872 17 6 10.7250 -4.0934 8.1557 18 6 10.9565 -5.4476 8.0019 19 6 10.7268 -6.0538 6.7810 20 6 10.2656 -5.3058 5.7139 21 7 1.5517 -2.1024 1.2493 22 6 0.3102 -2.3897 1.7504 23 1 -0.3090 -1.5982 2.1461 24 6 -0.1523 -3.6985 1.7509 25 7 0.6024 -4.6633 1.2692 26 14 -1.8462 -4.0904 2.4338 27 1 -2.8749 -3.3468 1.6630 28 1 -2.1005 -5.5491 2.3204 29 1 -1.9097 -3.6870 3.8616 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9337 -1.1547 0.3183 38 1 3.9329 0.3032 1.3394 39 1 3.4281 -1.9357 2.9850 40 1 5.5216 -2.0353 4.6783 41 1 5.5232 -3.4926 3.6564 42 1 7.8358 -1.9852 3.0598 43 1 9.8958 -3.5699 3.7728 44 1 9.8942 -2.1122 4.7943 45 1 10.0926 -2.2855 7.2060 46 1 10.9049 -3.6198 9.1095 47 1 11.3172 -6.0319 8.8355 48 1 10.9080 -7.1116 6.6607 49 1 10.0860 -5.7794 4.7600 50 1 2.1079 -2.8135 0.8942 51 1 0.2794 -5.5779 1.2698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319957312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:22 Heat of formation + Delta-G solvation = -51.397270 kcal Electronic energy + Delta-G solvation = -29525.761944 eV Core-core repulsion = 25424.686411 eV Total energy + Delta-G solvation = -4101.075533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.34480 -39.55701 -38.66915 -37.32512 -34.51682 -33.97345 -33.16486 -33.11388 -31.07243 -30.54561 -29.35277 -28.03280 -26.56853 -25.97653 -23.71518 -22.77620 -22.16333 -21.70543 -20.49231 -20.34527 -19.34780 -17.94872 -17.19792 -17.03246 -16.44327 -16.10592 -16.00137 -15.51770 -15.43813 -15.09486 -14.91467 -14.50370 -14.06973 -13.94022 -13.64539 -13.55696 -13.43180 -13.26385 -13.24234 -12.93168 -12.68446 -12.61916 -12.25253 -12.07898 -12.00209 -11.67211 -11.34580 -11.19860 -11.11254 -10.98445 -10.85360 -10.70432 -10.34517 -10.15991 -10.09179 -10.03262 -9.80554 -9.58216 -9.24890 -9.08060 -8.96476 -8.91492 -8.76451 -7.08202 -5.85913 -3.15619 1.13241 1.24122 2.51587 2.70655 2.84615 3.37842 3.43353 3.44629 3.52601 3.71646 4.39373 4.50454 4.60093 4.73828 4.81161 4.90910 4.93081 5.01013 5.19750 5.26948 5.31272 5.32167 5.33619 5.43467 5.44937 5.48631 5.58068 5.70009 5.79501 5.83104 5.84853 5.93014 6.11128 6.18682 6.21082 6.26027 6.32488 6.32722 6.38519 6.38750 6.47952 6.57329 6.59372 6.80752 6.81499 7.01744 7.25830 7.38683 7.62419 7.72414 8.11214 8.30786 8.33388 9.43319 9.96958 10.32699 11.35681 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.001998 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.057925 B =14014.012001 C =15777.102501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.169 3.831 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.704 5.704 8 C 0.507 3.493 9 O -0.556 6.556 10 C 0.099 3.901 11 N -0.718 5.718 12 C 0.514 3.486 13 O -0.531 6.531 14 C -0.101 4.101 15 C -0.065 4.065 16 C -0.106 4.106 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.105 4.105 21 N -0.721 5.721 22 C -0.239 4.239 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.411 0.589 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.385 0.615 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.209 5.320 7.144 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.355 5.355 8 C 0.292 3.708 9 O -0.435 6.435 10 C -0.029 4.029 11 N -0.373 5.373 12 C 0.300 3.700 13 O -0.407 6.407 14 C -0.141 4.141 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.123 4.123 21 N -0.363 5.363 22 C -0.370 4.370 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.251 0.749 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.249 0.751 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.219 0.781 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.113 5.232 7.303 21.119 hybrid contribution -1.078 -0.489 0.063 1.185 sum 18.035 4.744 7.366 20.050 Atomic orbital electron populations 1.21818 0.94874 1.03945 0.99015 1.21732 0.96984 0.94388 1.00013 1.21943 1.00423 0.97349 1.00976 1.20554 0.89167 0.88292 0.96115 0.92787 1.21788 0.95864 0.94774 0.88633 1.45907 1.06336 1.52327 1.30945 1.20397 0.83181 0.81123 0.86099 1.90652 1.55444 1.49620 1.47794 1.21070 0.81728 1.02013 0.98044 1.45710 1.06201 1.54011 1.31413 1.20511 0.89770 0.78616 0.81077 1.90757 1.70147 1.42760 1.37004 1.20659 0.92135 1.02302 0.99027 1.19272 0.98966 0.94004 0.94328 1.20987 0.98984 0.99915 0.92485 1.21097 0.99828 0.94318 0.98588 1.21145 1.00397 0.95021 0.97441 1.21112 0.99686 0.99775 0.93180 1.21011 0.98758 0.93269 0.99237 1.42450 1.18142 1.01790 1.73873 1.19134 0.92836 0.92349 1.32715 0.90949 1.24737 0.98316 0.95891 1.01673 1.69644 1.36945 0.99941 1.51114 0.86336 0.84334 0.77088 0.78814 1.21263 1.21782 1.21256 0.94046 0.94991 0.89471 0.91886 0.93089 0.93537 0.93181 0.91721 0.91418 0.74937 0.88456 0.88016 0.75129 0.87687 0.87747 0.86234 0.86129 0.86230 0.86074 0.86144 0.78106 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.26 37.16 0.31 -2.12 16 2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 3 C -0.15 -1.99 8.84 37.16 0.33 -1.66 16 4 C 0.17 2.94 2.18 -67.93 -0.15 2.80 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.79 4.73 -4.04 -0.02 1.77 16 7 N -0.70 -10.68 5.39 -60.29 -0.32 -11.01 16 8 C 0.51 7.44 7.90 -10.99 -0.09 7.35 16 9 O -0.56 -9.28 15.67 5.55 0.09 -9.19 16 10 C 0.10 1.26 6.15 -5.20 -0.03 1.23 16 11 N -0.72 -8.30 5.53 -61.47 -0.34 -8.64 16 12 C 0.51 6.22 7.82 -10.98 -0.09 6.13 16 13 O -0.53 -8.58 16.03 5.56 0.09 -8.49 16 14 C -0.10 -0.86 5.83 -29.03 -0.17 -1.03 16 15 C -0.07 -0.66 4.37 -104.62 -0.46 -1.12 16 16 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 17 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 18 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 19 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 20 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 21 N -0.72 -15.70 4.44 -53.43 -0.24 -15.93 16 22 C -0.24 -5.88 7.57 -15.06 -0.11 -6.00 16 23 H 0.07 1.74 7.40 -52.48 -0.39 1.36 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.26 13.06 55.49 0.72 -25.53 16 26 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.82 6.01 -51.93 -0.31 1.50 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 39 H 0.41 6.43 8.14 -40.82 -0.33 6.10 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.41 4.31 7.44 -40.82 -0.30 4.01 16 43 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 44 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 50 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 51 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 420.40 15.07 6.34 6.34 Total: -1.00 -31.20 420.40 -9.70 -40.90 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -8.23 Total: 17.70 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.78 Total: -2.37 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.18 Total: -61.11 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -31.20 -9.70 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319957312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.495 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds