Wall clock time and date at job start Wed Apr 1 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99519 * 2 1 4 4 C 1.53004 * 109.47111 * 269.99910 * 3 2 1 5 5 C 1.53001 * 109.46769 * 65.00032 * 4 3 2 6 6 C 1.52998 * 109.46779 * 185.00201 * 4 3 2 7 7 N 1.46898 * 109.47008 * 305.00266 * 4 3 2 8 8 C 1.34769 * 120.00134 * 180.02562 * 2 1 3 9 9 O 1.21358 * 119.99941 * 180.92026 * 8 2 1 10 10 C 1.49453 * 120.00441 * 0.91960 * 8 2 1 11 11 O 1.21345 * 119.99593 * 354.15329 * 10 8 2 12 12 N 1.34773 * 120.00235 * 174.15617 * 10 8 2 13 13 C 1.46497 * 119.99992 * 174.97092 * 12 10 8 14 14 H 1.09000 * 109.47022 * 35.22119 * 13 12 10 15 15 C 1.53000 * 109.46902 * 275.21843 * 13 12 10 16 16 C 1.50698 * 109.47201 * 172.38176 * 15 13 12 17 17 H 1.08001 * 120.00061 * 355.69335 * 16 15 13 18 18 C 1.37875 * 120.00143 * 175.42360 * 16 15 13 19 19 N 1.31513 * 119.99891 * 0.27105 * 18 16 15 20 20 Si 1.86797 * 119.99951 * 180.27549 * 18 16 15 21 21 H 1.48503 * 109.47410 * 59.99717 * 20 18 16 22 22 H 1.48503 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47391 * 299.99511 * 20 18 16 24 24 C 1.50700 * 109.47112 * 155.21837 * 13 12 10 25 25 C 1.38240 * 119.99887 * 39.72534 * 24 13 12 26 26 C 1.38241 * 119.99579 * 179.78302 * 25 24 13 27 27 C 1.38230 * 120.00242 * 0.44572 * 26 25 24 28 28 C 1.38242 * 120.00006 * 359.80718 * 27 26 25 29 29 C 1.38229 * 120.00059 * 219.99266 * 24 13 12 30 30 H 1.09001 * 109.47284 * 263.56753 * 1 2 3 31 31 H 1.08994 * 109.47903 * 23.57236 * 1 2 3 32 32 H 1.09003 * 109.47121 * 143.57718 * 1 2 3 33 33 H 1.08999 * 109.47279 * 30.00145 * 3 2 1 34 34 H 1.09001 * 109.47173 * 150.00209 * 3 2 1 35 35 H 1.09002 * 109.47358 * 60.00317 * 5 4 3 36 36 H 1.09005 * 109.47071 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47386 * 299.99912 * 5 4 3 38 38 H 1.08989 * 109.47235 * 60.00243 * 6 4 3 39 39 H 1.09005 * 109.46801 * 180.02562 * 6 4 3 40 40 H 1.09002 * 109.47296 * 299.99651 * 6 4 3 41 41 H 1.00896 * 111.00020 * 176.04419 * 7 4 3 42 42 H 1.00895 * 110.99935 * 300.00078 * 7 4 3 43 43 H 0.97003 * 119.99945 * 354.96068 * 12 10 8 44 44 H 1.09005 * 109.46979 * 52.38105 * 15 13 12 45 45 H 1.08995 * 109.46816 * 292.38030 * 15 13 12 46 46 H 0.97003 * 119.99791 * 180.02562 * 19 18 16 47 47 H 1.07992 * 120.00027 * 0.02562 * 25 24 13 48 48 H 1.08001 * 119.99475 * 180.27340 * 26 25 24 49 49 H 1.07994 * 120.00132 * 179.82853 * 27 26 25 50 50 H 1.07997 * 119.99677 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00307 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 1.1177 2.0135 -2.1265 6 6 3.3236 2.9682 -1.4443 7 7 3.1421 0.6360 -2.1690 8 6 2.1389 -1.1671 -0.0005 9 8 3.3523 -1.1671 0.0164 10 6 1.3919 -2.4614 -0.0219 11 8 0.1818 -2.4650 0.0683 12 7 2.0622 -3.6245 -0.1413 13 6 1.3424 -4.8973 -0.0516 14 1 0.3548 -4.7885 -0.4998 15 6 1.1945 -5.2971 1.4178 16 6 0.2967 -6.5029 1.5224 17 1 -0.1817 -6.8982 0.6385 18 6 0.0905 -7.1049 2.7455 19 7 0.6731 -6.6236 3.8218 20 14 -1.0163 -8.6042 2.8738 21 1 -0.4733 -9.6945 2.0243 22 1 -1.0719 -9.0590 4.2864 23 1 -2.3831 -8.2515 2.4127 24 6 2.1132 -5.9631 -0.7872 25 6 3.4923 -6.0029 -0.7005 26 6 4.1989 -6.9833 -1.3717 27 6 3.5272 -7.9183 -2.1368 28 6 2.1485 -7.8754 -2.2276 29 6 1.4415 -6.8976 -1.5529 30 1 -0.3634 -0.1151 1.0212 31 1 -0.3635 0.9418 -0.4109 32 1 -0.3633 -0.8269 -0.6102 33 1 1.6083 2.0284 0.5138 34 1 3.1499 1.1386 0.5138 35 1 0.6060 2.8108 -1.5875 36 1 1.2994 2.3287 -3.1541 37 1 0.4971 1.1175 -2.1252 38 1 4.2743 2.7523 -0.9570 39 1 3.5049 3.2832 -2.4720 40 1 2.8118 3.7655 -0.9053 41 1 3.2646 0.8774 -3.1409 42 1 4.0269 0.4172 -1.7364 43 1 3.0212 -3.6188 -0.2867 44 1 0.7583 -4.4696 1.9773 45 1 2.1748 -5.5373 1.8293 46 1 0.5283 -7.0473 4.6823 47 1 4.0173 -5.2704 -0.1054 48 1 5.2761 -7.0170 -1.3004 49 1 4.0795 -8.6825 -2.6633 50 1 1.6238 -8.6056 -2.8257 51 1 0.3644 -6.8642 -1.6238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329821323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:24 Heat of formation + Delta-G solvation = -37.856074 kcal Electronic energy + Delta-G solvation = -31483.528152 eV Core-core repulsion = 27383.039809 eV Total energy + Delta-G solvation = -4100.488343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56353 -39.21942 -38.29357 -37.24372 -35.54108 -34.45106 -32.77136 -31.05691 -30.38781 -29.73566 -28.64906 -28.12938 -27.45084 -26.43858 -25.00434 -22.89533 -22.32639 -21.97365 -20.23752 -19.59558 -19.27391 -17.69700 -16.83148 -16.60204 -16.22229 -16.07767 -15.55696 -15.29223 -15.11802 -14.74992 -14.55490 -14.33518 -14.24202 -13.80847 -13.53914 -13.38301 -13.05107 -12.90934 -12.84288 -12.74961 -12.63242 -12.44989 -12.29835 -12.13266 -12.11166 -11.85203 -11.55517 -11.45607 -11.14046 -11.11681 -10.88128 -10.81815 -10.74119 -10.58620 -10.03819 -9.94305 -9.26678 -8.97442 -8.79156 -8.61709 -8.43972 -8.43573 -8.33141 -8.03743 -5.98474 -4.00295 1.84341 1.89067 1.91147 2.69812 3.35963 3.39817 3.42076 3.66972 3.85387 4.29237 4.32852 4.48277 4.51952 4.66076 4.83891 4.87699 5.15893 5.23378 5.26142 5.31304 5.32952 5.38797 5.41324 5.41649 5.53233 5.55870 5.61053 5.68877 5.74798 5.80296 5.95029 6.01204 6.02101 6.11841 6.19187 6.40702 6.44515 6.52673 6.69270 6.78685 6.89893 6.93641 7.08786 7.15546 7.23917 7.38430 7.46227 7.57361 7.66863 7.81195 7.98946 8.16291 8.34948 8.52292 9.03041 9.62587 11.13123 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.003089 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.602649 B = 9062.648390 C =10583.951524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.577 5.577 3 C 0.126 3.874 4 C 0.096 3.904 5 C -0.143 4.143 6 C -0.179 4.179 7 N -0.832 5.832 8 C 0.523 3.477 9 O -0.524 6.524 10 C 0.506 3.494 11 O -0.517 6.517 12 N -0.690 5.690 13 C 0.179 3.821 14 H 0.092 0.908 15 C 0.025 3.975 16 C -0.512 4.512 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.050 4.050 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.134 4.134 28 C -0.122 4.122 29 C -0.097 4.097 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.335 0.665 42 H 0.349 0.651 43 H 0.403 0.597 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.261 0.739 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 15.071 -12.964 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.310 5.310 3 C 0.002 3.998 4 C 0.001 3.999 5 C -0.201 4.201 6 C -0.239 4.239 7 N -0.363 5.363 8 C 0.306 3.694 9 O -0.400 6.400 10 C 0.287 3.713 11 O -0.394 6.394 12 N -0.341 5.341 13 C 0.077 3.923 14 H 0.110 0.890 15 C -0.012 4.012 16 C -0.551 4.551 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.050 4.050 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.152 4.152 28 C -0.140 4.140 29 C -0.115 4.115 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.239 0.761 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.316 14.568 -12.464 19.652 hybrid contribution 0.617 -0.103 0.105 0.634 sum 4.933 14.464 -12.359 19.655 Atomic orbital electron populations 1.22381 0.78038 1.03492 1.03414 1.47305 1.07641 1.04672 1.71351 1.21577 0.98058 0.84916 0.95224 1.21230 0.94585 0.89421 0.94620 1.21943 0.96301 1.01952 0.99911 1.22592 1.00381 0.98786 1.02097 1.58770 1.29102 1.42572 1.05829 1.20083 0.87338 0.84980 0.76950 1.90640 1.13528 1.87213 1.48638 1.19932 0.87681 0.85159 0.78571 1.90678 1.13470 1.86774 1.48506 1.46091 1.12345 1.05443 1.70271 1.20469 0.93794 0.78029 1.00042 0.89025 1.19434 0.97986 0.96898 0.86916 1.20981 1.28110 1.12178 0.93809 0.92385 1.24944 0.96000 0.97319 0.95837 1.69957 1.43562 1.40798 0.98934 0.86668 0.81249 0.83236 0.76961 1.20202 1.21363 1.20153 1.19856 0.93495 0.96746 0.94939 1.20877 0.93834 0.99183 0.99672 1.20979 0.99348 0.95549 0.97970 1.20987 0.94547 0.99260 1.00389 1.21034 0.94255 0.98523 1.00154 1.20954 0.99912 0.94743 0.95932 0.92316 0.91944 0.87875 0.89940 0.89822 0.92331 0.92907 0.91075 0.92397 0.92450 0.92022 0.85221 0.83632 0.76089 0.95811 0.95711 0.92956 0.86561 0.86645 0.86857 0.86597 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.28 59.85 0.50 1.33 16 2 N -0.58 -7.53 2.60 -182.08 -0.47 -8.01 16 3 C 0.13 1.28 4.63 -4.04 -0.02 1.26 16 4 C 0.10 0.82 0.99 -131.60 -0.13 0.69 16 5 C -0.14 -1.15 7.72 37.16 0.29 -0.86 16 6 C -0.18 -1.21 8.76 37.16 0.33 -0.89 16 7 N -0.83 -8.29 7.49 0.74 0.01 -8.28 16 8 C 0.52 8.46 7.06 -11.59 -0.08 8.38 16 9 O -0.52 -8.83 14.67 5.49 0.08 -8.75 16 10 C 0.51 9.37 7.71 -11.59 -0.09 9.28 16 11 O -0.52 -10.46 12.84 5.50 0.07 -10.39 16 12 N -0.69 -12.76 5.01 -55.37 -0.28 -13.04 16 13 C 0.18 3.73 2.22 -69.08 -0.15 3.58 16 14 H 0.09 2.00 7.37 -51.93 -0.38 1.62 16 15 C 0.03 0.65 4.70 -27.88 -0.13 0.52 16 16 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 17 H 0.06 1.54 6.90 -52.49 -0.36 1.18 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 C -0.05 -0.95 4.53 -104.62 -0.47 -1.42 16 25 C -0.12 -2.03 9.04 -39.58 -0.36 -2.39 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 28 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 29 C -0.10 -1.74 8.92 -39.58 -0.35 -2.09 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.57 6.28 -51.93 -0.33 0.24 16 32 H 0.10 1.48 5.57 -51.93 -0.29 1.19 16 33 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.08 0.94 7.41 -51.93 -0.38 0.55 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.34 2.82 8.98 -39.29 -0.35 2.47 16 42 H 0.35 3.76 8.13 -39.29 -0.32 3.44 16 43 H 0.40 6.83 6.36 -40.82 -0.26 6.57 16 44 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.02 0.68 8.11 -51.93 -0.42 0.26 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.12 1.89 6.90 -52.49 -0.36 1.53 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 50 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 51 H 0.12 2.11 7.86 -52.49 -0.41 1.70 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -32.23 408.93 -8.95 -41.18 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -7.97 Total: 12.87 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.27 Total: -2.35 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.01 Total: -55.49 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.15 Total: -19.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.23 -8.95 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329821323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.328 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds