Wall clock time and date at job start Wed Apr 1 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99519 * 2 1 4 4 C 1.53004 * 109.47111 * 269.99910 * 3 2 1 5 5 C 1.53001 * 109.46769 * 65.00032 * 4 3 2 6 6 C 1.52998 * 109.46779 * 185.00201 * 4 3 2 7 7 N 1.46898 * 109.47008 * 305.00266 * 4 3 2 8 8 C 1.34769 * 120.00134 * 180.02562 * 2 1 3 9 9 O 1.21358 * 119.99941 * 180.92026 * 8 2 1 10 10 C 1.49453 * 120.00441 * 0.91960 * 8 2 1 11 11 O 1.21345 * 119.99593 * 354.15329 * 10 8 2 12 12 N 1.34773 * 120.00235 * 174.15617 * 10 8 2 13 13 C 1.46497 * 119.99992 * 174.97092 * 12 10 8 14 14 H 1.09000 * 109.47022 * 35.22119 * 13 12 10 15 15 C 1.53000 * 109.46902 * 275.21843 * 13 12 10 16 16 C 1.50698 * 109.47201 * 172.38176 * 15 13 12 17 17 H 1.08001 * 120.00061 * 355.69335 * 16 15 13 18 18 C 1.37875 * 120.00143 * 175.42360 * 16 15 13 19 19 N 1.31513 * 119.99891 * 0.27105 * 18 16 15 20 20 Si 1.86797 * 119.99951 * 180.27549 * 18 16 15 21 21 H 1.48503 * 109.47410 * 59.99717 * 20 18 16 22 22 H 1.48503 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47391 * 299.99511 * 20 18 16 24 24 C 1.50700 * 109.47112 * 155.21837 * 13 12 10 25 25 C 1.38240 * 119.99887 * 39.72534 * 24 13 12 26 26 C 1.38241 * 119.99579 * 179.78302 * 25 24 13 27 27 C 1.38230 * 120.00242 * 0.44572 * 26 25 24 28 28 C 1.38242 * 120.00006 * 359.80718 * 27 26 25 29 29 C 1.38229 * 120.00059 * 219.99266 * 24 13 12 30 30 H 1.09001 * 109.47284 * 263.56753 * 1 2 3 31 31 H 1.08994 * 109.47903 * 23.57236 * 1 2 3 32 32 H 1.09003 * 109.47121 * 143.57718 * 1 2 3 33 33 H 1.08999 * 109.47279 * 30.00145 * 3 2 1 34 34 H 1.09001 * 109.47173 * 150.00209 * 3 2 1 35 35 H 1.09002 * 109.47358 * 60.00317 * 5 4 3 36 36 H 1.09005 * 109.47071 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47386 * 299.99912 * 5 4 3 38 38 H 1.08989 * 109.47235 * 60.00243 * 6 4 3 39 39 H 1.09005 * 109.46801 * 180.02562 * 6 4 3 40 40 H 1.09002 * 109.47296 * 299.99651 * 6 4 3 41 41 H 1.00896 * 111.00020 * 176.04419 * 7 4 3 42 42 H 1.00895 * 110.99935 * 300.00078 * 7 4 3 43 43 H 0.97003 * 119.99945 * 354.96068 * 12 10 8 44 44 H 1.09005 * 109.46979 * 52.38105 * 15 13 12 45 45 H 1.08995 * 109.46816 * 292.38030 * 15 13 12 46 46 H 0.97003 * 119.99791 * 180.02562 * 19 18 16 47 47 H 1.07992 * 120.00027 * 0.02562 * 25 24 13 48 48 H 1.08001 * 119.99475 * 180.27340 * 26 25 24 49 49 H 1.07994 * 120.00132 * 179.82853 * 27 26 25 50 50 H 1.07997 * 119.99677 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00307 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 1.1177 2.0135 -2.1265 6 6 3.3236 2.9682 -1.4443 7 7 3.1421 0.6360 -2.1690 8 6 2.1389 -1.1671 -0.0005 9 8 3.3523 -1.1671 0.0164 10 6 1.3919 -2.4614 -0.0219 11 8 0.1818 -2.4650 0.0683 12 7 2.0622 -3.6245 -0.1413 13 6 1.3424 -4.8973 -0.0516 14 1 0.3548 -4.7885 -0.4998 15 6 1.1945 -5.2971 1.4178 16 6 0.2967 -6.5029 1.5224 17 1 -0.1817 -6.8982 0.6385 18 6 0.0905 -7.1049 2.7455 19 7 0.6731 -6.6236 3.8218 20 14 -1.0163 -8.6042 2.8738 21 1 -0.4733 -9.6945 2.0243 22 1 -1.0719 -9.0590 4.2864 23 1 -2.3831 -8.2515 2.4127 24 6 2.1132 -5.9631 -0.7872 25 6 3.4923 -6.0029 -0.7005 26 6 4.1989 -6.9833 -1.3717 27 6 3.5272 -7.9183 -2.1368 28 6 2.1485 -7.8754 -2.2276 29 6 1.4415 -6.8976 -1.5529 30 1 -0.3634 -0.1151 1.0212 31 1 -0.3635 0.9418 -0.4109 32 1 -0.3633 -0.8269 -0.6102 33 1 1.6083 2.0284 0.5138 34 1 3.1499 1.1386 0.5138 35 1 0.6060 2.8108 -1.5875 36 1 1.2994 2.3287 -3.1541 37 1 0.4971 1.1175 -2.1252 38 1 4.2743 2.7523 -0.9570 39 1 3.5049 3.2832 -2.4720 40 1 2.8118 3.7655 -0.9053 41 1 3.2646 0.8774 -3.1409 42 1 4.0269 0.4172 -1.7364 43 1 3.0212 -3.6188 -0.2867 44 1 0.7583 -4.4696 1.9773 45 1 2.1748 -5.5373 1.8293 46 1 0.5283 -7.0473 4.6823 47 1 4.0173 -5.2704 -0.1054 48 1 5.2761 -7.0170 -1.3004 49 1 4.0795 -8.6825 -2.6633 50 1 1.6238 -8.6056 -2.8257 51 1 0.3644 -6.8642 -1.6238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329821323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:23 Heat of formation + Delta-G solvation = -59.558705 kcal Electronic energy + Delta-G solvation = -31484.469248 eV Core-core repulsion = 27383.039809 eV Total energy + Delta-G solvation = -4101.429439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89401 -40.52051 -39.53624 -38.32034 -36.98923 -35.68443 -34.79057 -32.61640 -31.66674 -30.49321 -30.40371 -28.99912 -28.21956 -27.63659 -26.63140 -24.41984 -23.84911 -23.31717 -21.44892 -21.12301 -20.22882 -18.99257 -18.62296 -17.93142 -17.46839 -17.29900 -16.79058 -16.64585 -16.36159 -16.27530 -15.96862 -15.58734 -15.34352 -15.11379 -14.68571 -14.67325 -14.37313 -14.19730 -14.14886 -13.93891 -13.91692 -13.62090 -13.53100 -13.15510 -13.09085 -12.91131 -12.76897 -12.68931 -12.60856 -12.53665 -12.38389 -12.10262 -12.00030 -11.87105 -11.84128 -11.64823 -11.35239 -10.56146 -10.38456 -10.12703 -9.70902 -9.68415 -9.48003 -9.43155 -8.18606 -6.27979 0.50648 0.53441 0.60834 1.39096 1.43195 1.44929 1.50467 2.26691 2.40977 2.59278 3.00311 3.16174 3.41597 3.61578 3.81553 3.82338 3.98743 4.04085 4.19279 4.23823 4.33238 4.34731 4.46862 4.47592 4.61770 4.71790 4.72913 4.76100 4.79781 4.81786 4.89710 4.95326 4.97643 5.06610 5.13393 5.18375 5.23295 5.27737 5.39843 5.41714 5.46071 5.48964 5.64354 5.68952 5.74663 5.86422 6.01827 6.18877 6.21976 6.33343 6.38894 6.64696 6.80663 6.85604 7.07696 7.39487 8.93827 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.003089 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.602649 B = 9062.648390 C =10583.951524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.566 5.566 3 C 0.118 3.882 4 C 0.097 3.903 5 C -0.141 4.141 6 C -0.170 4.170 7 N -0.847 5.847 8 C 0.522 3.478 9 O -0.535 6.535 10 C 0.496 3.504 11 O -0.540 6.540 12 N -0.687 5.687 13 C 0.197 3.803 14 H 0.075 0.925 15 C 0.040 3.960 16 C -0.522 4.522 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.076 4.076 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.118 4.118 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.343 0.657 42 H 0.343 0.657 43 H 0.410 0.590 44 H -0.018 1.018 45 H -0.002 1.002 46 H 0.262 0.738 47 H 0.116 0.884 48 H 0.146 0.854 49 H 0.152 0.848 50 H 0.145 0.855 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 14.958 -14.767 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.297 5.297 3 C -0.004 4.004 4 C 0.004 3.996 5 C -0.199 4.199 6 C -0.230 4.230 7 N -0.378 5.378 8 C 0.304 3.696 9 O -0.413 6.413 10 C 0.278 3.722 11 O -0.418 6.418 12 N -0.339 5.339 13 C 0.093 3.907 14 H 0.093 0.907 15 C 0.002 3.998 16 C -0.561 4.561 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.785 3.215 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.077 4.077 25 C -0.150 4.150 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.140 4.140 29 C -0.136 4.136 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.248 0.752 44 H 0.000 1.000 45 H 0.017 0.983 46 H 0.071 0.929 47 H 0.134 0.866 48 H 0.164 0.836 49 H 0.169 0.831 50 H 0.163 0.837 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.729 14.497 -14.298 20.904 hybrid contribution 0.509 -0.013 0.632 0.811 sum 5.238 14.485 -13.665 20.591 Atomic orbital electron populations 1.22357 0.77444 1.04572 1.02721 1.47382 1.08114 1.04728 1.69482 1.21919 0.97747 0.83838 0.96863 1.21242 0.95285 0.89856 0.93258 1.21928 0.95573 1.01682 1.00680 1.22488 0.99784 0.97938 1.02788 1.58784 1.28864 1.43655 1.06522 1.19643 0.87085 0.84919 0.77911 1.90631 1.13600 1.87244 1.49831 1.20591 0.87711 0.86174 0.77740 1.90667 1.14529 1.87358 1.49291 1.45991 1.12635 1.04990 1.70255 1.19934 0.94071 0.79825 0.96855 0.90705 1.19176 0.95783 0.95071 0.89804 1.21362 1.28032 1.12501 0.94189 0.91557 1.25890 0.97545 1.00609 0.95448 1.70107 1.45279 1.42513 0.99510 0.85564 0.79391 0.79419 0.77125 1.18877 1.21078 1.19209 1.19751 0.94302 0.97027 0.96581 1.21028 0.93305 1.00283 1.00418 1.21369 1.00936 0.94567 0.96936 1.21465 0.94365 0.99298 0.99314 1.21398 0.95006 0.98041 0.99519 1.21099 1.00072 0.95568 0.96897 0.93049 0.88207 0.90190 0.87090 0.90867 0.90405 0.92162 0.92958 0.92856 0.91686 0.90639 0.84360 0.84348 0.75218 1.00003 0.98323 0.92933 0.86588 0.83627 0.83073 0.83686 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 8.28 127.77 1.06 2.79 16 2 N -0.57 -14.78 2.60 -848.33 -2.21 -16.99 16 3 C 0.12 2.27 4.63 86.38 0.40 2.67 16 4 C 0.10 1.52 0.99 3.53 0.00 1.52 16 5 C -0.14 -1.96 7.72 71.98 0.56 -1.40 16 6 C -0.17 -1.92 8.76 71.98 0.63 -1.29 16 7 N -0.85 -16.42 7.49 -151.56 -1.14 -17.55 16 8 C 0.52 17.50 7.06 87.27 0.62 18.11 16 9 O -0.54 -18.58 14.67 -3.27 -0.05 -18.63 16 10 C 0.50 19.54 7.71 87.27 0.67 20.21 16 11 O -0.54 -23.34 12.84 -3.23 -0.04 -23.38 16 12 N -0.69 -27.13 5.01 -447.45 -2.24 -29.37 16 13 C 0.20 8.72 2.22 44.25 0.10 8.82 16 14 H 0.07 3.51 7.37 -2.39 -0.02 3.50 16 15 C 0.04 2.18 4.70 29.85 0.14 2.32 16 16 C -0.52 -29.95 8.56 25.60 0.22 -29.73 16 17 H 0.07 3.61 6.90 -2.91 -0.02 3.59 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 20 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.08 -2.98 4.53 -19.87 -0.09 -3.07 16 25 C -0.13 -4.59 9.04 22.27 0.20 -4.39 16 26 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 27 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 28 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 29 C -0.12 -4.23 8.92 22.27 0.20 -4.03 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.66 6.28 -2.39 -0.02 1.64 16 32 H 0.08 2.39 5.57 -2.39 -0.01 2.37 16 33 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.07 1.60 7.41 -2.39 -0.02 1.58 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.05 0.94 6.01 -2.39 -0.01 0.92 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.34 5.51 8.98 -89.70 -0.81 4.70 16 42 H 0.34 7.35 8.13 -89.70 -0.73 6.63 16 43 H 0.41 14.77 6.36 -92.71 -0.59 14.18 16 44 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 45 H 0.00 -0.10 8.11 -2.39 -0.02 -0.11 16 46 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.12 3.90 6.90 -2.91 -0.02 3.88 16 48 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 49 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 50 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 51 H 0.12 4.16 7.86 -2.91 -0.02 4.14 16 Total: -1.00 -73.37 408.93 1.32 -72.05 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -1.16 Total: 41.04 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.84 Total: 3.54 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.30 Total: -121.78 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -0.09 Total: -42.00 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.37 1.32 -72.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329821323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.490 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds