Wall clock time and date at job start Wed Apr 1 2020 04:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.53001 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47016 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47098 * 55.00308 * 5 4 3 7 7 C 1.53002 * 109.47315 * 174.99956 * 5 4 3 8 8 N 1.46492 * 109.47208 * 175.00152 * 7 5 4 9 9 C 1.36945 * 119.99813 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99707 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99831 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00294 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99997 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46986 * 60.00115 * 13 11 9 15 15 H 1.48497 * 109.47217 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46861 * 300.00107 * 13 11 9 17 17 N 1.46500 * 109.47494 * 295.00351 * 5 4 3 18 18 C 1.34773 * 120.00189 * 84.99445 * 17 5 4 19 19 O 1.21507 * 120.00187 * 0.02562 * 18 17 5 20 20 C 1.48165 * 119.99867 * 180.02562 * 18 17 5 21 21 C 1.39610 * 120.89327 * 0.02562 * 20 18 17 22 22 C 1.38850 * 118.95162 * 179.97438 * 21 20 18 23 23 O 1.35684 * 119.62308 * 180.02562 * 22 21 20 24 24 N 1.32199 * 120.75392 * 0.02562 * 22 21 20 25 25 C 1.31884 * 121.97179 * 359.97438 * 24 22 21 26 26 C 1.50696 * 119.51093 * 180.02562 * 25 24 22 27 27 C 1.53006 * 117.49744 * 163.62278 * 26 25 24 28 28 C 1.53007 * 60.00143 * 252.51138 * 27 26 25 29 29 C 1.38014 * 120.97462 * 0.02562 * 25 24 22 30 30 H 1.08996 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47249 * 299.99801 * 1 2 3 32 32 H 1.09009 * 109.47055 * 59.99819 * 1 2 3 33 33 H 1.09004 * 109.47089 * 240.00809 * 2 1 3 34 34 H 1.08996 * 109.47297 * 120.00308 * 2 1 3 35 35 H 1.09004 * 109.46554 * 59.99859 * 3 2 1 36 36 H 1.09005 * 109.47190 * 300.00575 * 3 2 1 37 37 H 1.08996 * 109.46879 * 60.00595 * 4 3 2 38 38 H 1.09000 * 109.46857 * 300.00101 * 4 3 2 39 39 H 1.09000 * 109.46735 * 295.00371 * 7 5 4 40 40 H 1.08999 * 109.46774 * 54.99717 * 7 5 4 41 41 H 0.96996 * 120.00566 * 359.97438 * 8 7 5 42 42 H 0.96996 * 120.00055 * 179.97438 * 12 11 9 43 43 H 0.96998 * 119.99483 * 265.00676 * 17 5 4 44 44 H 1.08004 * 120.52129 * 359.97438 * 21 20 18 45 45 H 0.96695 * 114.00328 * 270.00117 * 23 22 21 46 46 H 1.08995 * 115.55500 * 309.33420 * 26 25 24 47 47 H 1.08999 * 117.49703 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.49614 * 145.02495 * 27 26 25 49 49 H 1.08998 * 117.49845 * 252.50881 * 28 27 26 50 50 H 1.09002 * 117.51447 * 107.47904 * 28 27 26 51 51 H 1.08003 * 120.43581 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4235 0.8423 7 6 5.6049 2.8868 0.1251 8 7 6.1030 4.2593 0.0060 9 6 7.4470 4.5094 0.0867 10 1 8.1396 3.6948 0.2386 11 6 7.9190 5.8098 -0.0267 12 7 7.0749 6.8025 -0.2123 13 14 9.7524 6.1509 0.0827 14 1 10.4577 5.4176 -0.9990 15 1 9.9947 7.6081 -0.0683 16 1 10.2622 5.6978 1.4019 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6990 4.0753 -0.4306 20 6 2.0818 4.7705 -2.6311 21 6 2.9579 4.8182 -3.7171 22 6 2.5480 5.4492 -4.8841 23 8 3.3883 5.5030 -5.9481 24 7 1.3485 5.9981 -4.9703 25 6 0.4949 5.9724 -3.9653 26 6 -0.8588 6.6153 -4.1245 27 6 -1.9418 6.2420 -3.1102 28 6 -2.0231 5.7157 -4.5446 29 6 0.8230 5.3654 -2.7700 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9330 0.9289 -0.8909 38 1 3.9337 0.9285 0.8891 39 1 5.8903 2.4796 1.0950 40 1 6.0351 2.2741 -0.6671 41 1 5.4810 4.9909 -0.1308 42 1 7.4048 7.7112 -0.2912 43 1 4.3110 3.5669 -1.9974 44 1 3.9389 4.3713 -3.6505 45 1 3.9601 6.2827 -5.9586 46 1 -0.8521 7.6382 -4.5006 47 1 -1.6750 5.5318 -2.3275 48 1 -2.6477 7.0196 -2.8187 49 1 -2.7825 6.1471 -5.1967 50 1 -1.8098 4.6591 -4.7061 51 1 0.1171 5.3491 -1.9528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329876317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:15 Heat of formation + Delta-G solvation = -17.772757 kcal Electronic energy + Delta-G solvation = -30962.485852 eV Core-core repulsion = 26862.868388 eV Total energy + Delta-G solvation = -4099.617465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99690 -39.60144 -37.99088 -36.76384 -36.17444 -34.97362 -33.71192 -32.87221 -31.21045 -30.37275 -30.04959 -27.33738 -25.15299 -24.51567 -24.07666 -22.60743 -22.30790 -21.83836 -20.79054 -20.69451 -20.04768 -18.66693 -17.47878 -17.20806 -17.01797 -16.26589 -15.74379 -15.56751 -15.50988 -15.23462 -14.76824 -14.66317 -14.61569 -13.89580 -13.83141 -13.54986 -13.29243 -13.13863 -12.78269 -12.71003 -12.49280 -12.18012 -12.08818 -11.98384 -11.92911 -11.62311 -11.37136 -11.12563 -10.98530 -10.91333 -10.87842 -10.84602 -10.68052 -10.43310 -10.38337 -10.10396 -10.06664 -9.89514 -9.79055 -9.46812 -8.97867 -8.91582 -8.75535 -7.03358 -5.84194 -3.14566 0.61851 0.82025 2.82194 3.18393 3.28441 3.38772 3.43744 3.44459 3.63404 3.73598 4.17387 4.49117 4.55706 4.64687 4.71049 4.81785 4.87103 4.87980 4.92290 5.03223 5.15030 5.23176 5.34741 5.38419 5.40937 5.42102 5.48630 5.49206 5.58881 5.62495 5.78233 5.83571 5.85325 5.89346 5.89613 5.93226 5.96303 6.01415 6.11538 6.18085 6.24475 6.26558 6.37693 6.43010 6.57414 6.62383 6.83625 7.34610 7.61842 7.67742 7.75167 8.31599 8.33691 9.45302 10.00160 10.35490 11.37798 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007395 B = 0.003604 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3785.493085 B = 7767.683604 C =10496.292404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.127 4.127 5 C 0.138 3.862 6 H 0.090 0.910 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.698 5.698 18 C 0.559 3.441 19 O -0.528 6.528 20 C -0.061 4.061 21 C -0.153 4.153 22 C 0.314 3.686 23 O -0.480 6.480 24 N -0.486 5.486 25 C 0.176 3.824 26 C -0.108 4.108 27 C -0.171 4.171 28 C -0.161 4.161 29 C -0.125 4.125 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.025 0.975 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.404 0.596 44 H 0.148 0.852 45 H 0.404 0.596 46 H 0.125 0.875 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.323 -6.614 -7.138 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.166 4.166 5 C 0.033 3.967 6 H 0.108 0.892 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.349 5.349 18 C 0.344 3.656 19 O -0.405 6.405 20 C -0.072 4.072 21 C -0.175 4.175 22 C 0.135 3.865 23 O -0.288 6.288 24 N -0.205 5.205 25 C 0.038 3.962 26 C -0.127 4.127 27 C -0.209 4.209 28 C -0.199 4.199 29 C -0.145 4.145 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.240 0.760 44 H 0.166 0.834 45 H 0.263 0.737 46 H 0.142 0.858 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.113 0.887 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.082 -6.804 -7.378 19.812 hybrid contribution 1.905 0.637 0.364 2.041 sum -15.177 -6.167 -7.013 17.820 Atomic orbital electron populations 1.21742 0.96230 1.00888 1.01840 1.21570 0.95656 0.97655 1.01405 1.21678 0.94742 0.95468 1.03146 1.21988 0.96127 0.96113 1.02387 1.21389 0.96265 0.92532 0.86480 0.89161 1.20978 0.89033 0.89450 0.98978 1.42343 1.05430 1.01946 1.87939 1.19165 0.83578 0.92493 1.42339 0.91160 1.24746 0.97705 0.95643 1.02568 1.69655 1.33011 0.99044 1.56171 0.86268 0.85068 0.76916 0.77897 1.21235 1.21683 1.21229 1.45886 1.15447 1.56129 1.17447 1.17946 0.82435 0.78529 0.86651 1.90762 1.51481 1.59010 1.39280 1.20349 0.94496 0.98180 0.94211 1.22384 1.01320 1.01749 0.92018 1.18880 0.87720 0.94147 0.85745 1.84766 1.51668 1.48500 1.43823 1.66660 1.03458 1.18491 1.31928 1.19945 0.93711 0.94527 0.87972 1.20760 0.85692 1.00042 1.06214 1.23152 1.00618 1.03979 0.93108 1.22983 0.99264 0.99705 0.97939 1.22056 0.96460 0.96929 0.99069 0.93287 0.92760 0.93011 0.92602 0.92353 0.91419 0.91945 0.91860 0.90898 0.94678 0.95717 0.78031 0.93415 0.76011 0.83390 0.73729 0.85761 0.87886 0.87779 0.88049 0.88651 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.17 16 2 C -0.13 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.11 -1.47 3.82 -26.73 -0.10 -1.57 16 4 C -0.13 -1.65 4.89 -26.73 -0.13 -1.78 16 5 C 0.14 2.17 2.42 -67.93 -0.16 2.01 16 6 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 7 C 0.14 2.66 5.82 -4.05 -0.02 2.63 16 8 N -0.73 -17.46 5.43 -59.91 -0.33 -17.78 16 9 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 10 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 13 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.70 -10.67 4.43 -54.65 -0.24 -10.91 16 18 C 0.56 8.83 6.36 -12.18 -0.08 8.75 16 19 O -0.53 -9.29 13.58 5.36 0.07 -9.21 16 20 C -0.06 -0.88 5.91 -104.68 -0.62 -1.50 16 21 C -0.15 -2.07 9.55 -38.84 -0.37 -2.44 16 22 C 0.31 4.30 7.74 -17.17 -0.13 4.16 16 23 O -0.48 -5.79 13.56 -18.76 -0.25 -6.04 16 24 N -0.49 -6.85 10.27 -9.60 -0.10 -6.95 16 25 C 0.18 2.25 6.45 -82.65 -0.53 1.72 16 26 C -0.11 -1.08 6.21 -91.77 -0.57 -1.65 16 27 C -0.17 -1.39 9.79 -26.72 -0.26 -1.65 16 28 C -0.16 -1.34 10.23 -26.72 -0.27 -1.62 16 29 C -0.12 -1.65 8.92 -39.03 -0.35 -2.00 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 36 H 0.06 0.90 5.65 -51.93 -0.29 0.61 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.39 9.86 7.33 -40.82 -0.30 9.56 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.40 5.93 6.74 -40.82 -0.28 5.65 16 44 H 0.15 1.83 6.53 -52.48 -0.34 1.49 16 45 H 0.40 3.11 9.06 45.56 0.41 3.53 16 46 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.10 0.87 6.38 -51.93 -0.33 0.53 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.15 1.88 5.92 -52.48 -0.31 1.57 16 LS Contribution 415.67 15.07 6.26 6.26 Total: -1.00 -32.25 415.67 -9.81 -42.06 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -7.28 Total: 17.08 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.64 Total: -4.71 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.06 Total: -62.21 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.18 Total: -15.26 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.25 -9.81 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329876317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.286 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds