Wall clock time and date at job start Wed Apr 1 2020 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.53001 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47016 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47098 * 55.00308 * 5 4 3 7 7 C 1.53002 * 109.47315 * 174.99956 * 5 4 3 8 8 N 1.46492 * 109.47208 * 175.00152 * 7 5 4 9 9 C 1.36945 * 119.99813 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99707 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99831 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00294 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99997 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46986 * 60.00115 * 13 11 9 15 15 H 1.48497 * 109.47217 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46861 * 300.00107 * 13 11 9 17 17 N 1.46500 * 109.47494 * 295.00351 * 5 4 3 18 18 C 1.34773 * 120.00189 * 84.99445 * 17 5 4 19 19 O 1.21507 * 120.00187 * 0.02562 * 18 17 5 20 20 C 1.48165 * 119.99867 * 180.02562 * 18 17 5 21 21 C 1.39610 * 120.89327 * 0.02562 * 20 18 17 22 22 C 1.38850 * 118.95162 * 179.97438 * 21 20 18 23 23 O 1.35684 * 119.62308 * 180.02562 * 22 21 20 24 24 N 1.32199 * 120.75392 * 0.02562 * 22 21 20 25 25 C 1.31884 * 121.97179 * 359.97438 * 24 22 21 26 26 C 1.50696 * 119.51093 * 180.02562 * 25 24 22 27 27 C 1.53006 * 117.49744 * 163.62278 * 26 25 24 28 28 C 1.53007 * 60.00143 * 252.51138 * 27 26 25 29 29 C 1.38014 * 120.97462 * 0.02562 * 25 24 22 30 30 H 1.08996 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47249 * 299.99801 * 1 2 3 32 32 H 1.09009 * 109.47055 * 59.99819 * 1 2 3 33 33 H 1.09004 * 109.47089 * 240.00809 * 2 1 3 34 34 H 1.08996 * 109.47297 * 120.00308 * 2 1 3 35 35 H 1.09004 * 109.46554 * 59.99859 * 3 2 1 36 36 H 1.09005 * 109.47190 * 300.00575 * 3 2 1 37 37 H 1.08996 * 109.46879 * 60.00595 * 4 3 2 38 38 H 1.09000 * 109.46857 * 300.00101 * 4 3 2 39 39 H 1.09000 * 109.46735 * 295.00371 * 7 5 4 40 40 H 1.08999 * 109.46774 * 54.99717 * 7 5 4 41 41 H 0.96996 * 120.00566 * 359.97438 * 8 7 5 42 42 H 0.96996 * 120.00055 * 179.97438 * 12 11 9 43 43 H 0.96998 * 119.99483 * 265.00676 * 17 5 4 44 44 H 1.08004 * 120.52129 * 359.97438 * 21 20 18 45 45 H 0.96695 * 114.00328 * 270.00117 * 23 22 21 46 46 H 1.08995 * 115.55500 * 309.33420 * 26 25 24 47 47 H 1.08999 * 117.49703 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.49614 * 145.02495 * 27 26 25 49 49 H 1.08998 * 117.49845 * 252.50881 * 28 27 26 50 50 H 1.09002 * 117.51447 * 107.47904 * 28 27 26 51 51 H 1.08003 * 120.43581 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4235 0.8423 7 6 5.6049 2.8868 0.1251 8 7 6.1030 4.2593 0.0060 9 6 7.4470 4.5094 0.0867 10 1 8.1396 3.6948 0.2386 11 6 7.9190 5.8098 -0.0267 12 7 7.0749 6.8025 -0.2123 13 14 9.7524 6.1509 0.0827 14 1 10.4577 5.4176 -0.9990 15 1 9.9947 7.6081 -0.0683 16 1 10.2622 5.6978 1.4019 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6990 4.0753 -0.4306 20 6 2.0818 4.7705 -2.6311 21 6 2.9579 4.8182 -3.7171 22 6 2.5480 5.4492 -4.8841 23 8 3.3883 5.5030 -5.9481 24 7 1.3485 5.9981 -4.9703 25 6 0.4949 5.9724 -3.9653 26 6 -0.8588 6.6153 -4.1245 27 6 -1.9418 6.2420 -3.1102 28 6 -2.0231 5.7157 -4.5446 29 6 0.8230 5.3654 -2.7700 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9330 0.9289 -0.8909 38 1 3.9337 0.9285 0.8891 39 1 5.8903 2.4796 1.0950 40 1 6.0351 2.2741 -0.6671 41 1 5.4810 4.9909 -0.1308 42 1 7.4048 7.7112 -0.2912 43 1 4.3110 3.5669 -1.9974 44 1 3.9389 4.3713 -3.6505 45 1 3.9601 6.2827 -5.9586 46 1 -0.8521 7.6382 -4.5006 47 1 -1.6750 5.5318 -2.3275 48 1 -2.6477 7.0196 -2.8187 49 1 -2.7825 6.1471 -5.1967 50 1 -1.8098 4.6591 -4.7061 51 1 0.1171 5.3491 -1.9528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329876317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:14 Heat of formation + Delta-G solvation = -40.535078 kcal Electronic energy + Delta-G solvation = -30963.472900 eV Core-core repulsion = 26862.868388 eV Total energy + Delta-G solvation = -4100.604513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07343 -40.80426 -38.85641 -38.01887 -37.13232 -36.27272 -35.23433 -34.06025 -32.85218 -31.66307 -31.06142 -28.76257 -26.30461 -25.87509 -25.27623 -23.76995 -23.33678 -22.79299 -21.91895 -21.81468 -21.20204 -19.74132 -19.16542 -18.31653 -18.28756 -17.39451 -16.86941 -16.76152 -16.51644 -16.39489 -16.27558 -15.84537 -15.43081 -15.34329 -15.19779 -15.01700 -14.50653 -14.30797 -14.12565 -13.82670 -13.54525 -13.43549 -13.15939 -12.98032 -12.90246 -12.88153 -12.76696 -12.52950 -12.29610 -12.18252 -12.03088 -11.90175 -11.86275 -11.68355 -11.43579 -11.42322 -11.37461 -11.26710 -10.97937 -10.95407 -10.54941 -10.03187 -9.90284 -9.01571 -7.94385 -5.23994 -0.48927 -0.20075 1.48713 1.50569 1.56643 1.68976 1.98614 2.30386 2.55770 2.61355 2.93224 3.24252 3.39616 3.46380 3.63849 3.78130 3.81456 3.94293 3.99476 4.04060 4.06875 4.09843 4.23588 4.25681 4.30936 4.34086 4.50756 4.54737 4.57694 4.61665 4.75852 4.82760 4.85700 4.91124 4.93435 4.98860 5.02355 5.07111 5.13932 5.15638 5.20991 5.23609 5.30591 5.32901 5.38665 5.50707 5.53669 5.59161 6.25841 6.41442 6.49025 6.74927 7.06684 7.33735 8.06672 8.30345 9.28069 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007395 B = 0.003604 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3785.493085 B = 7767.683604 C =10496.292404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.066 0.934 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.244 4.244 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.967 5.967 13 Si 0.971 3.029 14 H -0.276 1.276 15 H -0.299 1.299 16 H -0.281 1.281 17 N -0.695 5.695 18 C 0.559 3.441 19 O -0.550 6.550 20 C -0.073 4.073 21 C -0.157 4.157 22 C 0.311 3.689 23 O -0.485 6.485 24 N -0.501 5.501 25 C 0.177 3.823 26 C -0.128 4.128 27 C -0.161 4.161 28 C -0.153 4.153 29 C -0.130 4.130 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.407 0.593 44 H 0.156 0.844 45 H 0.422 0.578 46 H 0.132 0.868 47 H 0.097 0.903 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.087 0.913 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.584 -7.897 -7.655 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.084 0.916 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.376 4.376 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.617 5.617 13 Si 0.800 3.200 14 H -0.202 1.202 15 H -0.226 1.226 16 H -0.207 1.207 17 N -0.346 5.346 18 C 0.345 3.655 19 O -0.429 6.429 20 C -0.084 4.084 21 C -0.179 4.179 22 C 0.132 3.868 23 O -0.295 6.295 24 N -0.221 5.221 25 C 0.039 3.961 26 C -0.147 4.147 27 C -0.198 4.198 28 C -0.191 4.191 29 C -0.150 4.150 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.173 0.827 45 H 0.283 0.717 46 H 0.150 0.850 47 H 0.115 0.885 48 H 0.143 0.857 49 H 0.140 0.860 50 H 0.106 0.894 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.321 -8.134 -7.901 20.703 hybrid contribution 1.950 0.995 0.519 2.250 sum -15.372 -7.138 -7.382 18.486 Atomic orbital electron populations 1.21737 0.95802 1.01818 1.01304 1.21543 0.96059 0.96012 1.02286 1.21564 0.94655 0.96711 1.01420 1.21933 0.96031 0.94001 1.03738 1.21231 0.94371 0.94195 0.85940 0.91622 1.21129 0.90679 0.86912 0.99496 1.42513 1.04488 1.03747 1.87875 1.19582 0.84990 0.92663 1.40365 0.90326 1.25509 1.01621 0.95710 1.03498 1.69815 1.34659 0.99014 1.58231 0.85256 0.80503 0.76117 0.78109 1.20163 1.22553 1.20719 1.45843 1.15427 1.56035 1.17299 1.18147 0.82233 0.78185 0.86919 1.90744 1.52104 1.59915 1.40186 1.20317 0.95325 0.98917 0.93833 1.22430 1.01531 1.02028 0.91901 1.19004 0.87957 0.93886 0.85973 1.84720 1.51815 1.49807 1.43175 1.66762 1.03818 1.19004 1.32476 1.20383 0.94600 0.93756 0.87324 1.20879 0.84786 1.00570 1.08436 1.23238 0.99701 1.04109 0.92781 1.23067 0.98448 0.99049 0.98487 1.22180 0.96226 0.97016 0.99589 0.91597 0.93230 0.93675 0.91782 0.91307 0.93325 0.93563 0.90470 0.89436 0.94174 0.94139 0.79401 0.94169 0.75622 0.82667 0.71670 0.85005 0.88476 0.85741 0.86023 0.89432 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.12 -2.45 5.93 30.59 0.18 -2.27 16 3 C -0.11 -2.70 3.82 30.59 0.12 -2.58 16 4 C -0.12 -2.91 4.89 30.59 0.15 -2.76 16 5 C 0.15 4.62 2.42 44.99 0.11 4.73 16 6 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 7 C 0.14 5.22 5.82 86.38 0.50 5.72 16 8 N -0.74 -35.45 5.43 -343.46 -1.87 -37.32 16 9 C -0.24 -12.96 9.99 84.03 0.84 -12.12 16 10 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 11 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 12 N -0.97 -57.56 13.06 21.65 0.28 -57.27 16 13 Si 0.97 44.77 29.55 68.60 2.03 46.79 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 N -0.70 -21.46 4.43 -445.11 -1.97 -23.43 16 18 C 0.56 18.10 6.36 86.88 0.55 18.65 16 19 O -0.55 -19.99 13.58 -3.74 -0.05 -20.04 16 20 C -0.07 -2.15 5.91 -19.90 -0.12 -2.26 16 21 C -0.16 -4.29 9.55 22.75 0.22 -4.08 16 22 C 0.31 8.47 7.74 84.78 0.66 9.13 16 23 O -0.48 -11.43 13.56 -90.03 -1.22 -12.65 16 24 N -0.50 -14.03 10.27 -297.17 -3.05 -17.08 16 25 C 0.18 4.51 6.45 42.50 0.27 4.78 16 26 C -0.13 -2.44 6.21 -11.54 -0.07 -2.51 16 27 C -0.16 -2.38 9.79 30.60 0.30 -2.08 16 28 C -0.15 -2.32 10.23 30.60 0.31 -2.00 16 29 C -0.13 -3.49 8.92 22.63 0.20 -3.29 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.42 7.84 -2.38 -0.02 1.40 16 36 H 0.05 1.33 5.65 -2.38 -0.01 1.32 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.37 19.47 7.33 -92.71 -0.68 18.79 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.41 11.98 6.74 -92.71 -0.62 11.35 16 44 H 0.16 3.87 6.53 -2.91 -0.02 3.85 16 45 H 0.42 6.24 9.06 -74.06 -0.67 5.57 16 46 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.10 1.56 6.38 -2.39 -0.02 1.55 16 48 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.16 3.97 5.92 -2.91 -0.02 3.96 16 Total: -1.00 -68.82 415.67 -1.45 -70.27 By element: Atomic # 1 Polarization: 50.28 SS G_CDS: -1.00 Total: 49.27 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.41 Total: 1.45 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -6.61 Total: -135.10 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.27 Total: -32.69 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.82 -1.45 -70.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329876317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.737 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds