Wall clock time and date at job start Wed Apr 1 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00171 * 2 1 4 4 O 1.21279 * 119.99664 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99895 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46966 * 300.00234 * 5 3 2 7 7 C 1.52997 * 109.47170 * 60.00368 * 5 3 2 8 8 C 1.50693 * 109.47229 * 184.99934 * 7 5 3 9 9 C 1.38233 * 120.00207 * 89.99423 * 8 7 5 10 10 C 1.38234 * 120.00037 * 179.72405 * 9 8 7 11 11 C 1.38234 * 120.00240 * 0.26327 * 10 9 8 12 12 C 1.38238 * 119.99693 * 359.97438 * 11 10 9 13 13 C 1.38234 * 120.00067 * 0.02562 * 12 11 10 14 14 N 1.46500 * 109.46692 * 180.02562 * 5 3 2 15 15 C 1.34770 * 120.00405 * 85.00214 * 14 5 3 16 16 O 1.21591 * 120.00298 * 359.97438 * 15 14 5 17 17 N 1.34779 * 120.00305 * 179.97438 * 15 14 5 18 18 C 1.46498 * 120.00356 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47446 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.47174 * 300.00095 * 19 18 17 21 21 C 1.53005 * 109.46670 * 59.99803 * 19 18 17 22 22 C 1.50698 * 109.47201 * 179.97438 * 19 18 17 23 23 H 1.08002 * 119.99818 * 0.02562 * 22 19 18 24 24 C 1.37879 * 119.99971 * 179.97438 * 22 19 18 25 25 N 1.31516 * 119.99652 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 119.99939 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.47415 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46747 * 120.00190 * 26 24 22 29 29 H 1.48493 * 109.47216 * 239.99993 * 26 24 22 30 30 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47215 * 299.99866 * 1 2 3 32 32 H 1.09002 * 109.46771 * 59.99731 * 1 2 3 33 33 H 0.96995 * 119.99413 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47015 * 64.99964 * 7 5 3 35 35 H 1.09001 * 109.46743 * 304.99717 * 7 5 3 36 36 H 1.08002 * 120.00157 * 0.02562 * 9 8 7 37 37 H 1.07999 * 120.00009 * 180.28389 * 10 9 8 38 38 H 1.07997 * 120.00460 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.99624 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.00008 * 180.02562 * 13 12 11 41 41 H 0.97006 * 119.99831 * 264.99696 * 14 5 3 42 42 H 0.96998 * 119.99611 * 359.97438 * 17 15 14 43 43 H 1.08997 * 109.47088 * 300.00065 * 18 17 15 44 44 H 1.09006 * 109.47289 * 59.99531 * 18 17 15 45 45 H 1.09001 * 109.47192 * 59.99731 * 20 19 18 46 46 H 1.08993 * 109.47275 * 179.97438 * 20 19 18 47 47 H 1.09003 * 109.46978 * 300.00204 * 20 19 18 48 48 H 1.08997 * 109.47015 * 60.00289 * 21 19 18 49 49 H 1.09005 * 109.46605 * 179.97438 * 21 19 18 50 50 H 1.08991 * 109.47357 * 300.00094 * 21 19 18 51 51 H 0.97005 * 119.99843 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0089 0.6534 0.8908 7 6 4.1564 0.4456 -1.2483 8 6 5.6582 0.3375 -1.1874 9 6 6.2484 -0.7622 -0.5930 10 6 7.6261 -0.8641 -0.5422 11 6 8.4135 0.1361 -1.0809 12 6 7.8233 1.2382 -1.6709 13 6 6.4456 1.3401 -1.7217 14 7 4.1342 2.5483 0.0011 15 6 4.2625 3.2174 1.1639 16 8 3.9726 2.6748 2.2127 17 7 4.7123 4.4879 1.1644 18 6 4.8512 5.2153 2.4284 19 6 5.3770 6.6251 2.1505 20 6 6.7401 6.5344 1.4618 21 6 4.3944 7.3657 1.2411 22 6 5.5193 7.3735 3.4507 23 1 5.2610 6.8917 4.3822 24 6 5.9803 8.6730 3.4513 25 7 6.2953 9.2593 2.3170 26 14 6.1560 9.6009 5.0629 27 1 5.7387 8.7246 6.1868 28 1 7.5730 10.0041 5.2499 29 1 5.2967 10.8116 5.0332 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.9499 -0.8401 0.0004 34 1 3.8684 1.0085 -2.1362 35 1 3.7217 -0.5529 -1.2942 36 1 5.6332 -1.5441 -0.1727 37 1 8.0872 -1.7255 -0.0820 38 1 9.4898 0.0563 -1.0416 39 1 8.4385 2.0195 -2.0922 40 1 5.9845 2.2009 -2.1830 41 1 4.3653 2.9814 -0.8356 42 1 4.9439 4.9206 0.3278 43 1 3.8802 5.2796 2.9193 44 1 5.5515 4.6879 3.0762 45 1 6.6368 5.9931 0.5213 46 1 7.1145 7.5386 1.2634 47 1 7.4401 6.0066 2.1096 48 1 3.4233 7.4303 1.7318 49 1 4.7688 8.3702 1.0435 50 1 4.2910 6.8245 0.3007 51 1 6.6192 10.1737 2.3173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001427711372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:24 Heat of formation + Delta-G solvation = -46.597518 kcal Electronic energy + Delta-G solvation = -31215.615304 eV Core-core repulsion = 27114.747904 eV Total energy + Delta-G solvation = -4100.867400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55212 -39.24736 -38.96399 -36.46368 -35.25341 -34.73487 -33.20991 -32.34827 -31.06993 -30.74647 -29.33490 -26.85536 -25.64455 -25.54067 -24.93343 -23.88108 -22.79900 -21.41832 -20.81862 -20.31059 -18.70919 -18.19314 -17.67221 -16.96405 -16.62808 -15.78266 -15.51728 -15.37194 -15.13801 -15.06945 -14.77010 -14.63999 -14.00647 -13.94024 -13.72871 -13.57452 -13.29729 -13.06945 -12.82284 -12.79451 -12.69268 -12.54217 -12.31880 -12.08992 -11.73577 -11.34092 -11.32564 -11.19154 -11.13722 -10.82792 -10.60588 -10.32811 -10.16141 -10.15126 -9.71554 -9.55064 -9.28657 -9.23510 -9.10950 -8.99539 -8.82010 -8.71059 -8.35782 -8.10415 -5.96482 -4.05878 1.13744 1.23563 2.57666 2.81285 3.23946 3.31180 3.39541 3.45166 3.59625 3.80957 4.34027 4.43431 4.54069 4.59402 4.73519 4.83478 4.85929 4.90909 4.98594 5.07078 5.18846 5.30344 5.30810 5.32310 5.40290 5.56085 5.60948 5.81465 5.84945 6.20961 6.27270 6.29195 6.33966 6.37397 6.45796 6.53729 6.59822 6.81627 6.88162 6.91403 6.99141 7.11890 7.19655 7.29878 7.35828 7.48866 7.63673 7.76050 8.08660 8.13760 8.19605 8.45260 8.56054 8.94283 9.13725 9.59506 11.04999 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.002952 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.734240 B = 9484.073813 C =11413.013502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.498 3.502 4 O -0.517 6.517 5 C 0.159 3.841 6 H 0.115 0.885 7 C -0.082 4.082 8 C -0.082 4.082 9 C -0.115 4.115 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.115 4.115 13 C -0.107 4.107 14 N -0.728 5.728 15 C 0.708 3.292 16 O -0.599 6.599 17 N -0.729 5.729 18 C 0.152 3.848 19 C 0.056 3.944 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.503 4.503 23 H 0.058 0.942 24 C 0.065 3.935 25 N -0.886 5.886 26 Si 0.892 3.108 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.399 0.601 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.395 0.605 42 H 0.393 0.607 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.005 0.995 46 H 0.084 0.916 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.084 0.916 50 H 0.006 0.994 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -22.887 -12.812 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.393 5.393 3 C 0.282 3.718 4 O -0.391 6.391 5 C 0.048 3.952 6 H 0.133 0.867 7 C -0.120 4.120 8 C -0.082 4.082 9 C -0.133 4.133 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.133 4.133 13 C -0.125 4.125 14 N -0.383 5.383 15 C 0.408 3.592 16 O -0.478 6.478 17 N -0.383 5.383 18 C 0.029 3.971 19 C 0.055 3.945 20 C -0.186 4.186 21 C -0.187 4.187 22 C -0.542 4.542 23 H 0.076 0.924 24 C -0.136 4.136 25 N -0.525 5.525 26 Si 0.721 3.279 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.230 0.770 42 H 0.227 0.773 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.103 0.897 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.103 0.897 50 H 0.025 0.975 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.481 -22.365 -11.856 25.435 hybrid contribution 0.476 0.547 0.150 0.740 sum -2.005 -21.819 -11.706 24.842 Atomic orbital electron populations 1.21508 0.79736 1.01946 1.02397 1.45813 1.07677 1.08608 1.77161 1.21373 0.90783 0.83809 0.75824 1.90740 1.69858 1.31232 1.47226 1.20541 0.89518 0.84528 1.00652 0.86690 1.20841 0.92478 1.01476 0.97248 1.19615 0.94407 0.95102 0.99105 1.21000 0.95001 0.97830 0.99444 1.21123 0.93810 0.99067 0.99694 1.21179 0.99918 0.94386 0.98420 1.21179 0.94892 0.97965 0.99241 1.21020 0.93803 0.97999 0.99662 1.44663 1.71819 1.13329 1.08526 1.15927 0.78061 0.81814 0.83430 1.90864 1.57663 1.68731 1.30558 1.45406 1.69443 1.11657 1.11795 1.21566 0.99962 0.93107 0.82480 1.18362 0.92127 0.88379 0.95598 1.21802 0.98623 1.02338 0.95834 1.21810 0.98194 1.03031 0.95671 1.21041 1.43458 0.97577 0.92079 0.92386 1.24878 0.95096 0.97365 0.96226 1.69824 1.44916 1.13050 1.24740 0.86523 0.77572 0.79784 0.84054 1.19751 1.21119 1.21100 0.90801 0.92242 0.92344 0.76737 0.89656 0.89037 0.86071 0.86138 0.86186 0.85913 0.86195 0.77034 0.77272 0.93035 0.93057 0.97573 0.89700 0.95521 0.95466 0.89709 0.97524 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.70 59.85 0.64 1.35 16 2 N -0.74 -6.49 5.57 -67.08 -0.37 -6.87 16 3 C 0.50 6.52 7.19 -10.99 -0.08 6.44 16 4 O -0.52 -9.37 16.32 5.56 0.09 -9.28 16 5 C 0.16 1.82 2.37 -69.08 -0.16 1.66 16 6 H 0.12 1.45 7.58 -51.93 -0.39 1.06 16 7 C -0.08 -0.61 4.83 -27.89 -0.13 -0.74 16 8 C -0.08 -0.72 4.95 -104.63 -0.52 -1.24 16 9 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 10 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 12 C -0.11 -1.09 10.05 -39.58 -0.40 -1.49 16 13 C -0.11 -1.00 9.09 -39.58 -0.36 -1.36 16 14 N -0.73 -10.26 4.06 -59.81 -0.24 -10.50 16 15 C 0.71 13.55 8.40 -86.92 -0.73 12.82 16 16 O -0.60 -13.74 16.01 5.29 0.08 -13.65 16 17 N -0.73 -14.11 4.96 -65.23 -0.32 -14.44 16 18 C 0.15 3.45 4.50 -4.04 -0.02 3.44 16 19 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 20 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 21 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 22 C -0.50 -13.59 8.01 -34.44 -0.28 -13.87 16 23 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 24 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 25 N -0.89 -24.11 9.35 55.43 0.52 -23.59 16 26 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 27 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 2.06 8.19 -40.82 -0.33 1.73 16 34 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.09 0.42 7.37 -51.93 -0.38 0.04 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 0.96 7.56 -52.49 -0.40 0.57 16 41 H 0.40 4.65 7.83 -40.82 -0.32 4.33 16 42 H 0.39 6.85 6.18 -40.82 -0.25 6.60 16 43 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 46 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 50 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 51 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 412.75 15.07 6.22 6.22 Total: -1.00 -35.34 412.75 -9.87 -45.21 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.03 Total: 10.49 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.79 Total: 0.22 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.42 Total: -55.39 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.18 Total: -22.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.34 -9.87 -45.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427711372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.386 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds