Wall clock time and date at job start Wed Apr 1 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00171 * 2 1 4 4 O 1.21279 * 119.99664 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99895 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46966 * 300.00234 * 5 3 2 7 7 C 1.52997 * 109.47170 * 60.00368 * 5 3 2 8 8 C 1.50693 * 109.47229 * 184.99934 * 7 5 3 9 9 C 1.38233 * 120.00207 * 89.99423 * 8 7 5 10 10 C 1.38234 * 120.00037 * 179.72405 * 9 8 7 11 11 C 1.38234 * 120.00240 * 0.26327 * 10 9 8 12 12 C 1.38238 * 119.99693 * 359.97438 * 11 10 9 13 13 C 1.38234 * 120.00067 * 0.02562 * 12 11 10 14 14 N 1.46500 * 109.46692 * 180.02562 * 5 3 2 15 15 C 1.34770 * 120.00405 * 85.00214 * 14 5 3 16 16 O 1.21591 * 120.00298 * 359.97438 * 15 14 5 17 17 N 1.34779 * 120.00305 * 179.97438 * 15 14 5 18 18 C 1.46498 * 120.00356 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47446 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.47174 * 300.00095 * 19 18 17 21 21 C 1.53005 * 109.46670 * 59.99803 * 19 18 17 22 22 C 1.50698 * 109.47201 * 179.97438 * 19 18 17 23 23 H 1.08002 * 119.99818 * 0.02562 * 22 19 18 24 24 C 1.37879 * 119.99971 * 179.97438 * 22 19 18 25 25 N 1.31516 * 119.99652 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 119.99939 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.47415 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46747 * 120.00190 * 26 24 22 29 29 H 1.48493 * 109.47216 * 239.99993 * 26 24 22 30 30 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47215 * 299.99866 * 1 2 3 32 32 H 1.09002 * 109.46771 * 59.99731 * 1 2 3 33 33 H 0.96995 * 119.99413 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47015 * 64.99964 * 7 5 3 35 35 H 1.09001 * 109.46743 * 304.99717 * 7 5 3 36 36 H 1.08002 * 120.00157 * 0.02562 * 9 8 7 37 37 H 1.07999 * 120.00009 * 180.28389 * 10 9 8 38 38 H 1.07997 * 120.00460 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.99624 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.00008 * 180.02562 * 13 12 11 41 41 H 0.97006 * 119.99831 * 264.99696 * 14 5 3 42 42 H 0.96998 * 119.99611 * 359.97438 * 17 15 14 43 43 H 1.08997 * 109.47088 * 300.00065 * 18 17 15 44 44 H 1.09006 * 109.47289 * 59.99531 * 18 17 15 45 45 H 1.09001 * 109.47192 * 59.99731 * 20 19 18 46 46 H 1.08993 * 109.47275 * 179.97438 * 20 19 18 47 47 H 1.09003 * 109.46978 * 300.00204 * 20 19 18 48 48 H 1.08997 * 109.47015 * 60.00289 * 21 19 18 49 49 H 1.09005 * 109.46605 * 179.97438 * 21 19 18 50 50 H 1.08991 * 109.47357 * 300.00094 * 21 19 18 51 51 H 0.97005 * 119.99843 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0089 0.6534 0.8908 7 6 4.1564 0.4456 -1.2483 8 6 5.6582 0.3375 -1.1874 9 6 6.2484 -0.7622 -0.5930 10 6 7.6261 -0.8641 -0.5422 11 6 8.4135 0.1361 -1.0809 12 6 7.8233 1.2382 -1.6709 13 6 6.4456 1.3401 -1.7217 14 7 4.1342 2.5483 0.0011 15 6 4.2625 3.2174 1.1639 16 8 3.9726 2.6748 2.2127 17 7 4.7123 4.4879 1.1644 18 6 4.8512 5.2153 2.4284 19 6 5.3770 6.6251 2.1505 20 6 6.7401 6.5344 1.4618 21 6 4.3944 7.3657 1.2411 22 6 5.5193 7.3735 3.4507 23 1 5.2610 6.8917 4.3822 24 6 5.9803 8.6730 3.4513 25 7 6.2953 9.2593 2.3170 26 14 6.1560 9.6009 5.0629 27 1 5.7387 8.7246 6.1868 28 1 7.5730 10.0041 5.2499 29 1 5.2967 10.8116 5.0332 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.9499 -0.8401 0.0004 34 1 3.8684 1.0085 -2.1362 35 1 3.7217 -0.5529 -1.2942 36 1 5.6332 -1.5441 -0.1727 37 1 8.0872 -1.7255 -0.0820 38 1 9.4898 0.0563 -1.0416 39 1 8.4385 2.0195 -2.0922 40 1 5.9845 2.2009 -2.1830 41 1 4.3653 2.9814 -0.8356 42 1 4.9439 4.9206 0.3278 43 1 3.8802 5.2796 2.9193 44 1 5.5515 4.6879 3.0762 45 1 6.6368 5.9931 0.5213 46 1 7.1145 7.5386 1.2634 47 1 7.4401 6.0066 2.1096 48 1 3.4233 7.4303 1.7318 49 1 4.7688 8.3702 1.0435 50 1 4.2910 6.8245 0.3007 51 1 6.6192 10.1737 2.3173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427711372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:24 Heat of formation + Delta-G solvation = -70.656679 kcal Electronic energy + Delta-G solvation = -31216.658587 eV Core-core repulsion = 27114.747904 eV Total energy + Delta-G solvation = -4101.910683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66049 -40.34672 -39.94476 -38.22340 -36.36971 -35.66912 -34.99479 -33.47588 -32.46438 -31.69816 -30.29237 -27.62249 -27.56466 -27.41080 -26.62933 -24.90962 -23.46140 -22.29166 -22.01896 -21.34474 -20.58391 -19.62742 -18.65771 -17.80966 -17.73713 -17.55395 -16.66926 -16.55943 -16.30608 -16.16866 -15.95798 -15.81507 -15.35369 -15.16839 -14.99531 -14.68223 -14.45794 -14.20446 -14.17662 -13.99834 -13.77177 -13.58795 -13.21352 -13.15403 -13.10720 -12.98245 -12.70371 -12.57493 -12.53822 -12.25633 -12.13966 -12.00567 -11.80175 -11.49222 -11.38532 -11.30925 -11.14545 -10.70098 -10.40687 -10.27437 -10.13511 -9.75647 -9.68679 -9.53685 -8.02194 -6.17768 0.47488 0.58727 1.41336 1.44838 1.54682 1.58658 1.66745 2.11896 2.45080 2.47980 2.93228 3.21219 3.36846 3.64957 3.83752 3.94402 4.10729 4.21822 4.24070 4.36102 4.41771 4.48936 4.52001 4.53108 4.62807 4.69341 4.70823 4.79788 4.88731 4.96017 4.98706 5.05828 5.11128 5.19835 5.20130 5.23536 5.37155 5.39756 5.43188 5.63168 5.63591 5.66867 5.67511 5.71250 5.73074 6.01802 6.14469 6.19530 6.21653 6.43924 6.53515 6.86129 7.12854 7.25536 7.49710 7.63698 8.97174 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.002952 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.734240 B = 9484.073813 C =11413.013502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.493 3.507 4 O -0.576 6.576 5 C 0.158 3.842 6 H 0.107 0.893 7 C -0.069 4.069 8 C -0.091 4.091 9 C -0.121 4.121 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.134 4.134 13 C -0.122 4.122 14 N -0.711 5.711 15 C 0.705 3.295 16 O -0.640 6.640 17 N -0.725 5.725 18 C 0.170 3.830 19 C 0.053 3.947 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.529 4.529 23 H 0.043 0.957 24 C 0.028 3.972 25 N -0.899 5.899 26 Si 0.946 3.054 27 H -0.276 1.276 28 H -0.279 1.279 29 H -0.281 1.281 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.420 0.580 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.409 0.591 42 H 0.404 0.596 43 H 0.027 0.973 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.064 0.936 50 H 0.033 0.967 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -24.975 -14.103 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.278 3.722 4 O -0.455 6.455 5 C 0.048 3.952 6 H 0.125 0.875 7 C -0.107 4.107 8 C -0.091 4.091 9 C -0.138 4.138 10 C -0.149 4.149 11 C -0.153 4.153 12 C -0.152 4.152 13 C -0.140 4.140 14 N -0.367 5.367 15 C 0.405 3.595 16 O -0.522 6.522 17 N -0.380 5.380 18 C 0.046 3.954 19 C 0.053 3.947 20 C -0.174 4.174 21 C -0.176 4.176 22 C -0.567 4.567 23 H 0.061 0.939 24 C -0.171 4.171 25 N -0.538 5.538 26 Si 0.773 3.227 27 H -0.201 1.201 28 H -0.205 1.205 29 H -0.207 1.207 30 H 0.135 0.865 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.257 0.743 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.240 0.760 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.083 0.917 50 H 0.052 0.948 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.549 -24.529 -13.216 27.979 hybrid contribution 0.483 1.094 0.530 1.308 sum -2.066 -23.435 -12.686 26.728 Atomic orbital electron populations 1.21653 0.78965 1.04343 1.00999 1.45684 1.08247 1.08370 1.74893 1.21628 0.91336 0.84059 0.75143 1.90720 1.70948 1.33420 1.50394 1.20776 0.88779 0.83090 1.02512 0.87493 1.20852 0.91664 1.02909 0.95241 1.19776 0.94973 0.95156 0.99204 1.21369 0.95287 0.98330 0.98857 1.21442 0.94276 0.99549 0.99655 1.21448 1.00799 0.94572 0.98496 1.21400 0.95397 0.98540 0.99885 1.21271 0.93994 0.98674 1.00035 1.44539 1.70504 1.14208 1.07413 1.16095 0.77640 0.81572 0.84225 1.90830 1.59322 1.69545 1.32519 1.45128 1.69868 1.11955 1.11004 1.21093 0.98047 0.92674 0.83623 1.18346 0.92900 0.88718 0.94769 1.21624 0.97513 1.01321 0.96953 1.21655 0.97101 1.02197 0.96688 1.21294 1.44192 0.98429 0.92817 0.93857 1.25456 0.94857 0.97939 0.98885 1.69917 1.44784 1.13218 1.25855 0.85684 0.77662 0.78519 0.80815 1.20078 1.20480 1.20714 0.86456 0.94603 0.92875 0.74256 0.88575 0.85438 0.83621 0.84478 0.85156 0.85391 0.85319 0.75487 0.75996 0.95423 0.94536 0.94545 0.91802 0.96267 0.96789 0.91674 0.94769 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.70 127.77 1.37 2.55 16 2 N -0.72 -10.85 5.57 -484.52 -2.70 -13.55 16 3 C 0.49 12.25 7.19 87.66 0.63 12.88 16 4 O -0.58 -20.88 16.32 -3.03 -0.05 -20.93 16 5 C 0.16 3.36 2.37 44.24 0.10 3.47 16 6 H 0.11 2.52 7.58 -2.39 -0.02 2.51 16 7 C -0.07 -0.80 4.83 29.84 0.14 -0.66 16 8 C -0.09 -1.38 4.95 -19.87 -0.10 -1.47 16 9 C -0.12 -1.72 9.70 22.27 0.22 -1.50 16 10 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 11 C -0.14 -2.32 10.05 22.27 0.22 -2.10 16 12 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 13 C -0.12 -2.08 9.09 22.27 0.20 -1.88 16 14 N -0.71 -19.27 4.06 -461.42 -1.87 -21.14 16 15 C 0.70 26.88 8.40 179.06 1.50 28.39 16 16 O -0.64 -29.75 16.01 -4.00 -0.06 -29.81 16 17 N -0.72 -27.88 4.96 -478.53 -2.37 -30.25 16 18 C 0.17 7.89 4.50 86.38 0.39 8.28 16 19 C 0.05 2.60 0.50 -52.93 -0.03 2.57 16 20 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 21 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 22 C -0.53 -29.11 8.01 25.60 0.21 -28.91 16 23 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 24 C 0.03 1.53 5.15 84.65 0.44 1.97 16 25 N -0.90 -48.99 9.35 21.45 0.20 -48.79 16 26 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 2.75 8.19 -92.71 -0.76 1.99 16 34 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.13 0.59 7.37 -2.39 -0.02 0.57 16 36 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.13 1.84 7.56 -2.91 -0.02 1.82 16 41 H 0.41 8.92 7.83 -92.70 -0.73 8.19 16 42 H 0.40 13.55 6.18 -92.71 -0.57 12.98 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 46 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 3.36 6.07 -2.38 -0.01 3.35 16 50 H 0.03 1.38 6.86 -2.39 -0.02 1.36 16 51 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 Total: -1.00 -79.12 412.75 0.97 -78.14 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -1.10 Total: 30.78 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.91 Total: 9.78 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -6.75 Total: -113.74 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.11 Total: -50.75 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -79.12 0.97 -78.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427711372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.488 kcal (2) G-P(sol) polarization free energy of solvation -79.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds