Wall clock time and date at job start Wed Apr 1 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47231 * 2 1 4 4 C 1.52998 * 109.47068 * 240.00051 * 2 1 3 5 5 N 1.46497 * 109.47248 * 119.99603 * 2 1 3 6 6 C 1.35438 * 119.47535 * 239.97653 * 5 2 1 7 7 C 1.35758 * 121.23279 * 180.02562 * 6 5 2 8 8 C 1.39471 * 120.12896 * 359.73340 * 7 6 5 9 9 C 1.39342 * 118.95972 * 0.53675 * 8 7 6 10 10 C 1.47080 * 120.58566 * 179.73668 * 9 8 7 11 11 O 1.21648 * 119.99857 * 259.32463 * 10 9 8 12 12 N 1.34773 * 119.99952 * 79.32726 * 10 9 8 13 13 C 1.47020 * 125.65070 * 355.01577 * 12 10 9 14 14 C 1.54324 * 107.27554 * 178.90724 * 13 12 10 15 15 C 1.55160 * 103.10115 * 337.71606 * 14 13 12 16 16 H 1.09000 * 111.00229 * 277.52221 * 15 14 13 17 17 C 1.52999 * 111.00627 * 153.66435 * 15 14 13 18 18 N 1.46493 * 109.47158 * 175.00451 * 17 15 14 19 19 C 1.36937 * 119.99933 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00112 * 359.97438 * 19 18 17 21 21 C 1.38818 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00213 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47016 * 59.99632 * 23 21 19 25 25 H 1.48493 * 109.47380 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47199 * 300.00057 * 23 21 19 27 27 C 1.47428 * 125.65013 * 174.97498 * 12 10 9 28 28 C 1.34662 * 119.46917 * 60.00016 * 5 2 1 29 29 O 1.21884 * 120.10201 * 0.02562 * 28 5 2 30 30 H 1.08997 * 109.46947 * 300.00128 * 1 2 3 31 31 H 1.09000 * 109.46981 * 59.99783 * 1 2 3 32 32 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47545 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46687 * 299.99973 * 3 2 1 35 35 H 1.09004 * 109.47195 * 59.99709 * 3 2 1 36 36 H 1.09000 * 109.47111 * 299.99883 * 4 2 1 37 37 H 1.08998 * 109.47286 * 59.99727 * 4 2 1 38 38 H 1.09005 * 109.47150 * 179.97438 * 4 2 1 39 39 H 1.07998 * 119.38272 * 0.02562 * 6 5 2 40 40 H 1.07989 * 119.93377 * 180.02562 * 7 6 5 41 41 H 1.08004 * 120.52321 * 180.27940 * 8 7 6 42 42 H 1.08995 * 109.88444 * 59.48630 * 13 12 10 43 43 H 1.09004 * 109.87962 * 298.32162 * 13 12 10 44 44 H 1.09005 * 110.72062 * 96.16400 * 14 13 12 45 45 H 1.08998 * 110.72001 * 219.26708 * 14 13 12 46 46 H 1.09001 * 109.47014 * 295.00239 * 17 15 14 47 47 H 1.08996 * 109.47120 * 55.00244 * 17 15 14 48 48 H 0.97000 * 120.00462 * 359.97438 * 18 17 15 49 49 H 0.97001 * 120.00125 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.36339 * 323.00175 * 27 12 10 51 51 H 1.09001 * 110.36484 * 85.21389 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 2.7967 -0.0222 2.0804 7 6 3.2691 -0.6272 3.2001 8 6 2.9519 -1.9597 3.4627 9 6 2.1564 -2.6555 2.5545 10 6 1.8048 -4.0636 2.7930 11 8 2.4053 -4.9473 2.2114 12 7 0.8174 -4.3748 3.6559 13 6 0.0836 -3.4197 4.4990 14 6 -0.9651 -4.2237 5.2962 15 6 -1.1494 -5.5056 4.4417 16 1 -1.8457 -5.3316 3.6214 17 6 -1.6079 -6.6807 5.3076 18 7 -1.8857 -7.8378 4.4531 19 6 -2.3136 -9.0133 5.0101 20 1 -2.4458 -9.0875 6.0794 21 6 -2.5773 -10.1095 4.2004 22 7 -2.4167 -10.0189 2.8972 23 14 -3.1602 -11.7133 4.9603 24 1 -4.4382 -11.4838 5.6810 25 1 -3.3702 -12.7208 3.8898 26 1 -2.1363 -12.2101 5.9142 27 6 0.2935 -5.7292 3.9100 28 6 1.6865 -1.9798 1.3987 29 8 0.9857 -2.5648 0.5911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 3.0462 1.0114 1.8911 40 1 3.8878 -0.0742 3.8912 41 1 3.3206 -2.4460 4.3538 42 1 -0.4143 -2.6792 3.8732 43 1 0.7719 -2.9259 5.1850 44 1 -0.5878 -4.4725 6.2882 45 1 -1.9015 -3.6707 5.3686 46 1 -0.8230 -6.9352 6.0199 47 1 -2.5127 -6.4025 5.8479 48 1 -1.7674 -7.7710 3.4927 49 1 -2.6014 -10.7848 2.3314 50 1 0.2716 -6.3070 2.9860 51 1 0.9011 -6.2365 4.6594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480667349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:13 Heat of formation + Delta-G solvation = -14.268961 kcal Electronic energy + Delta-G solvation = -31222.390924 eV Core-core repulsion = 27122.925395 eV Total energy + Delta-G solvation = -4099.465529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07336 -39.76699 -37.68041 -37.18372 -36.67932 -34.56949 -32.69946 -31.99587 -30.57929 -30.14081 -28.66669 -28.23655 -27.75308 -25.74926 -24.71958 -23.86251 -22.98911 -21.90766 -21.07985 -20.00817 -19.43914 -17.96939 -17.42840 -17.30423 -16.81171 -16.26157 -16.14021 -15.82252 -15.33649 -14.72977 -14.60713 -14.56201 -14.40000 -14.11712 -13.57237 -13.42967 -13.29277 -13.12136 -13.02019 -12.69534 -12.66581 -12.48761 -12.46059 -12.36505 -12.27592 -12.08485 -11.91000 -11.69088 -11.64660 -11.57229 -11.22132 -10.79463 -10.62757 -10.52817 -10.36778 -10.32426 -10.04442 -9.98600 -9.68724 -9.60965 -8.81004 -8.43878 -8.21524 -6.85901 -5.68489 -2.98105 0.31348 1.57086 2.06365 2.80470 3.07859 3.38101 3.49428 3.53211 3.55047 3.97886 4.06869 4.27961 4.39601 4.45877 4.54487 4.63471 4.66810 4.74302 4.83447 4.89728 4.97161 5.00048 5.06264 5.21225 5.26582 5.27358 5.40196 5.41774 5.43893 5.51683 5.61885 5.64756 5.67482 5.70976 5.81473 5.89655 5.94312 5.94325 6.05784 6.09711 6.17639 6.19804 6.35951 6.46627 6.54061 6.75685 6.76353 6.89834 7.67970 7.75477 7.80329 8.31852 8.49507 9.60411 10.18250 10.52539 11.54091 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.002250 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.617766 B =12439.386105 C =12923.680323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 C -0.163 4.163 4 C -0.166 4.166 5 N -0.483 5.483 6 C 0.140 3.860 7 C -0.237 4.237 8 C 0.018 3.982 9 C -0.246 4.246 10 C 0.599 3.401 11 O -0.525 6.525 12 N -0.610 5.610 13 C 0.106 3.894 14 C -0.125 4.125 15 C -0.105 4.105 16 H 0.085 0.915 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.117 3.883 28 C 0.535 3.465 29 O -0.523 6.523 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.168 0.832 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.022 0.978 47 H 0.024 0.976 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.083 0.917 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.887 32.383 -0.705 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.063 3.937 3 C -0.220 4.220 4 C -0.223 4.223 5 N -0.193 5.193 6 C 0.011 3.989 7 C -0.260 4.260 8 C -0.004 4.004 9 C -0.254 4.254 10 C 0.386 3.614 11 O -0.401 6.401 12 N -0.344 5.344 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.124 4.124 16 H 0.104 0.896 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.005 4.005 28 C 0.335 3.665 29 O -0.403 6.403 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.185 0.815 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.725 31.406 -1.567 33.560 hybrid contribution -0.163 -0.714 0.206 0.761 sum 11.562 30.693 -1.361 32.826 Atomic orbital electron populations 1.22243 0.92208 1.05276 1.02507 1.21033 0.96123 0.92294 0.84224 1.22305 1.01958 0.93768 1.04018 1.22250 1.01258 1.03511 0.95302 1.45749 1.41014 1.12092 1.20485 1.22235 0.89166 0.98596 0.88895 1.20535 1.09410 0.95941 1.00124 1.21801 0.89588 0.93015 0.96019 1.20919 1.09323 0.96355 0.98762 1.17012 0.79075 0.87094 0.78259 1.90837 1.51501 1.49014 1.48733 1.48462 1.35316 1.09836 1.40810 1.21983 0.94210 0.92448 0.93085 1.22643 0.98408 0.96307 0.98947 1.22673 0.95722 0.95183 0.98834 0.89627 1.20571 0.96939 0.86116 0.92571 1.42377 1.80882 1.08319 1.06178 1.19161 1.37013 0.89010 0.92113 0.91225 1.24762 1.02501 0.98274 0.95437 1.69656 1.55084 1.30603 1.02614 0.86262 0.78524 0.83580 0.77765 1.21322 1.21721 1.21280 1.22431 0.93502 0.82575 1.01949 1.16614 0.82500 0.80223 0.87174 1.90918 1.38653 1.64476 1.46250 0.92298 0.90742 0.89365 0.91236 0.89788 0.91208 0.89320 0.90758 0.92303 0.81502 0.83208 0.84390 0.91978 0.91789 0.90266 0.90057 0.96023 0.95830 0.78149 0.93420 0.89893 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.39 37.16 0.31 -1.03 16 2 C 0.15 1.07 1.02 -131.82 -0.13 0.94 16 3 C -0.16 -0.54 7.08 37.16 0.26 -0.28 16 4 C -0.17 -1.42 8.39 37.16 0.31 -1.10 16 5 N -0.48 -4.40 2.53 -105.39 -0.27 -4.66 16 6 C 0.14 0.80 9.58 -16.85 -0.16 0.64 16 7 C -0.24 -1.38 9.99 -40.01 -0.40 -1.78 16 8 C 0.02 0.17 9.91 -38.71 -0.38 -0.22 16 9 C -0.25 -3.39 4.85 -104.51 -0.51 -3.90 16 10 C 0.60 10.71 6.84 -12.68 -0.09 10.62 16 11 O -0.53 -11.76 17.40 5.24 0.09 -11.67 16 12 N -0.61 -9.91 3.33 -171.61 -0.57 -10.48 16 13 C 0.11 1.28 6.47 -3.06 -0.02 1.26 16 14 C -0.12 -1.53 6.41 -24.89 -0.16 -1.69 16 15 C -0.10 -1.76 3.07 -88.21 -0.27 -2.03 16 16 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 17 C 0.17 3.36 5.73 -4.05 -0.02 3.33 16 18 N -0.73 -19.19 5.55 -59.92 -0.33 -19.52 16 19 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 23 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 C 0.12 2.13 6.33 -2.26 -0.01 2.12 16 28 C 0.53 7.43 6.84 -14.91 -0.10 7.32 16 29 O -0.52 -9.23 12.67 5.02 0.06 -9.17 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.04 6.12 -51.93 -0.32 0.72 16 33 H 0.07 0.16 7.41 -51.93 -0.38 -0.22 16 34 H 0.08 0.21 8.14 -51.92 -0.42 -0.22 16 35 H 0.07 0.15 7.41 -51.93 -0.38 -0.23 16 36 H 0.09 1.10 6.12 -51.93 -0.32 0.78 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.17 0.30 5.55 -52.49 -0.29 0.01 16 40 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 41 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.38 10.76 7.67 -40.82 -0.31 10.44 16 49 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 50 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 51 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 407.79 15.07 6.15 6.15 Total: -1.00 -38.89 407.79 -9.08 -47.97 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.29 Total: 5.36 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.62 Total: 6.60 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.45 Total: -63.28 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.15 Total: -20.83 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.89 -9.08 -47.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480667349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.701 kcal (2) G-P(sol) polarization free energy of solvation -38.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds