Wall clock time and date at job start Wed Apr 1 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47231 * 2 1 4 4 C 1.52998 * 109.47068 * 240.00051 * 2 1 3 5 5 N 1.46497 * 109.47248 * 119.99603 * 2 1 3 6 6 C 1.35438 * 119.47535 * 239.97653 * 5 2 1 7 7 C 1.35758 * 121.23279 * 180.02562 * 6 5 2 8 8 C 1.39471 * 120.12896 * 359.73340 * 7 6 5 9 9 C 1.39342 * 118.95972 * 0.53675 * 8 7 6 10 10 C 1.47080 * 120.58566 * 179.73668 * 9 8 7 11 11 O 1.21648 * 119.99857 * 259.32463 * 10 9 8 12 12 N 1.34773 * 119.99952 * 79.32726 * 10 9 8 13 13 C 1.47020 * 125.65070 * 355.01577 * 12 10 9 14 14 C 1.54324 * 107.27554 * 178.90724 * 13 12 10 15 15 C 1.55160 * 103.10115 * 337.71606 * 14 13 12 16 16 H 1.09000 * 111.00229 * 277.52221 * 15 14 13 17 17 C 1.52999 * 111.00627 * 153.66435 * 15 14 13 18 18 N 1.46493 * 109.47158 * 175.00451 * 17 15 14 19 19 C 1.36937 * 119.99933 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00112 * 359.97438 * 19 18 17 21 21 C 1.38818 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00213 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47016 * 59.99632 * 23 21 19 25 25 H 1.48493 * 109.47380 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47199 * 300.00057 * 23 21 19 27 27 C 1.47428 * 125.65013 * 174.97498 * 12 10 9 28 28 C 1.34662 * 119.46917 * 60.00016 * 5 2 1 29 29 O 1.21884 * 120.10201 * 0.02562 * 28 5 2 30 30 H 1.08997 * 109.46947 * 300.00128 * 1 2 3 31 31 H 1.09000 * 109.46981 * 59.99783 * 1 2 3 32 32 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47545 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46687 * 299.99973 * 3 2 1 35 35 H 1.09004 * 109.47195 * 59.99709 * 3 2 1 36 36 H 1.09000 * 109.47111 * 299.99883 * 4 2 1 37 37 H 1.08998 * 109.47286 * 59.99727 * 4 2 1 38 38 H 1.09005 * 109.47150 * 179.97438 * 4 2 1 39 39 H 1.07998 * 119.38272 * 0.02562 * 6 5 2 40 40 H 1.07989 * 119.93377 * 180.02562 * 7 6 5 41 41 H 1.08004 * 120.52321 * 180.27940 * 8 7 6 42 42 H 1.08995 * 109.88444 * 59.48630 * 13 12 10 43 43 H 1.09004 * 109.87962 * 298.32162 * 13 12 10 44 44 H 1.09005 * 110.72062 * 96.16400 * 14 13 12 45 45 H 1.08998 * 110.72001 * 219.26708 * 14 13 12 46 46 H 1.09001 * 109.47014 * 295.00239 * 17 15 14 47 47 H 1.08996 * 109.47120 * 55.00244 * 17 15 14 48 48 H 0.97000 * 120.00462 * 359.97438 * 18 17 15 49 49 H 0.97001 * 120.00125 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.36339 * 323.00175 * 27 12 10 51 51 H 1.09001 * 110.36484 * 85.21389 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 2.7967 -0.0222 2.0804 7 6 3.2691 -0.6272 3.2001 8 6 2.9519 -1.9597 3.4627 9 6 2.1564 -2.6555 2.5545 10 6 1.8048 -4.0636 2.7930 11 8 2.4053 -4.9473 2.2114 12 7 0.8174 -4.3748 3.6559 13 6 0.0836 -3.4197 4.4990 14 6 -0.9651 -4.2237 5.2962 15 6 -1.1494 -5.5056 4.4417 16 1 -1.8457 -5.3316 3.6214 17 6 -1.6079 -6.6807 5.3076 18 7 -1.8857 -7.8378 4.4531 19 6 -2.3136 -9.0133 5.0101 20 1 -2.4458 -9.0875 6.0794 21 6 -2.5773 -10.1095 4.2004 22 7 -2.4167 -10.0189 2.8972 23 14 -3.1602 -11.7133 4.9603 24 1 -4.4382 -11.4838 5.6810 25 1 -3.3702 -12.7208 3.8898 26 1 -2.1363 -12.2101 5.9142 27 6 0.2935 -5.7292 3.9100 28 6 1.6865 -1.9798 1.3987 29 8 0.9857 -2.5648 0.5911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 3.0462 1.0114 1.8911 40 1 3.8878 -0.0742 3.8912 41 1 3.3206 -2.4460 4.3538 42 1 -0.4143 -2.6792 3.8732 43 1 0.7719 -2.9259 5.1850 44 1 -0.5878 -4.4725 6.2882 45 1 -1.9015 -3.6707 5.3686 46 1 -0.8230 -6.9352 6.0199 47 1 -2.5127 -6.4025 5.8479 48 1 -1.7674 -7.7710 3.4927 49 1 -2.6014 -10.7848 2.3314 50 1 0.2716 -6.3070 2.9860 51 1 0.9011 -6.2365 4.6594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480667349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:12 Heat of formation + Delta-G solvation = -42.570616 kcal Electronic energy + Delta-G solvation = -31223.618176 eV Core-core repulsion = 27122.925395 eV Total energy + Delta-G solvation = -4100.692780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.84090 -41.02849 -38.92965 -38.16177 -37.43529 -36.45631 -34.05686 -33.19863 -32.05467 -31.09120 -30.04427 -28.76938 -28.41500 -27.27291 -25.78661 -25.11925 -24.16179 -23.36040 -21.83889 -21.41917 -20.51682 -19.20644 -18.73890 -18.20246 -18.07323 -17.40648 -17.14179 -16.73675 -16.60088 -16.34464 -15.67918 -15.45043 -15.28897 -15.21214 -15.13430 -14.86684 -14.63394 -14.27796 -13.98015 -13.71164 -13.60717 -13.52836 -13.20492 -13.14305 -13.13767 -13.06444 -13.00761 -12.79432 -12.72221 -12.62920 -12.33295 -12.19936 -12.15265 -12.14704 -11.92665 -11.67461 -11.65069 -11.31913 -11.01595 -10.94506 -10.74937 -9.77600 -9.02985 -8.99499 -7.95690 -5.26297 -0.38618 0.86767 1.17172 1.44784 1.49682 1.55744 1.71065 1.97141 2.52928 2.55122 3.30711 3.38254 3.46263 3.58845 3.65556 3.76918 3.78194 3.83717 3.88941 3.89791 4.00496 4.14444 4.23380 4.30846 4.39099 4.51150 4.56781 4.58181 4.60213 4.62361 4.70424 4.76294 4.80788 4.81674 4.84645 4.93674 4.96068 5.00744 5.03906 5.14597 5.16307 5.23224 5.23921 5.25091 5.30172 5.37627 5.47962 5.60163 6.05769 6.24882 6.42594 6.94434 7.01241 7.30163 8.06387 8.28439 9.28181 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.002250 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.617766 B =12439.386105 C =12923.680323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 C -0.157 4.157 4 C -0.165 4.165 5 N -0.478 5.478 6 C 0.158 3.842 7 C -0.230 4.230 8 C 0.050 3.950 9 C -0.308 4.308 10 C 0.592 3.408 11 O -0.595 6.595 12 N -0.611 5.611 13 C 0.106 3.894 14 C -0.109 4.109 15 C -0.097 4.097 16 H 0.065 0.935 17 C 0.166 3.834 18 N -0.751 5.751 19 C -0.245 4.245 20 H 0.083 0.917 21 C -0.084 4.084 22 N -0.976 5.976 23 Si 0.980 3.020 24 H -0.272 1.272 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.119 3.881 28 C 0.522 3.478 29 O -0.587 6.587 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.223 0.777 40 H 0.201 0.799 41 H 0.156 0.844 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.031 0.969 47 H 0.039 0.961 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.030 0.970 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.179 37.730 2.534 40.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.058 3.942 3 C -0.214 4.214 4 C -0.223 4.223 5 N -0.185 5.185 6 C 0.029 3.971 7 C -0.252 4.252 8 C 0.027 3.973 9 C -0.315 4.315 10 C 0.382 3.618 11 O -0.476 6.476 12 N -0.343 5.343 13 C -0.015 4.015 14 C -0.147 4.147 15 C -0.117 4.117 16 H 0.084 0.916 17 C 0.040 3.960 18 N -0.394 5.394 19 C -0.376 4.376 20 H 0.101 0.899 21 C -0.275 4.275 22 N -0.627 5.627 23 Si 0.808 3.192 24 H -0.198 1.198 25 H -0.225 1.225 26 H -0.202 1.202 27 C -0.003 4.003 28 C 0.325 3.675 29 O -0.473 6.473 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.239 0.761 40 H 0.218 0.782 41 H 0.173 0.827 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.200 0.800 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.012 36.854 1.762 39.124 hybrid contribution -0.480 -2.194 -0.778 2.377 sum 12.532 34.660 0.984 36.869 Atomic orbital electron populations 1.22196 0.93252 1.02567 1.03964 1.21283 0.95541 0.94601 0.82792 1.22341 1.03146 0.89929 1.05969 1.22218 1.01462 1.01148 0.97424 1.45810 1.40528 1.10730 1.21466 1.23269 0.86080 1.00412 0.87320 1.21121 1.09002 0.94277 1.00791 1.22194 0.86079 0.94190 0.94846 1.20490 1.14714 0.94637 1.01648 1.17848 0.78230 0.88714 0.77010 1.90764 1.54086 1.51616 1.51106 1.48597 1.34997 1.09596 1.41106 1.22248 0.94622 0.91622 0.93045 1.22674 0.99877 0.93358 0.98753 1.22488 0.93742 0.96686 0.98753 0.91643 1.20761 0.97628 0.85245 0.92395 1.42682 1.80893 1.09666 1.06115 1.19673 1.35365 0.89838 0.92759 0.89884 1.25716 1.03717 1.02207 0.95891 1.69861 1.57225 1.31299 1.04272 0.85112 0.78539 0.78776 0.76740 1.19820 1.22505 1.20161 1.22193 0.94981 0.83839 0.99328 1.16746 0.82316 0.81725 0.86717 1.90889 1.41841 1.66329 1.48254 0.91101 0.88916 0.94144 0.89307 0.88421 0.88838 0.94315 0.88726 0.91767 0.76118 0.78246 0.82658 0.91601 0.87859 0.88030 0.87447 0.95143 0.94275 0.80007 0.94132 0.95124 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.39 71.98 0.60 -1.99 16 2 C 0.14 1.82 1.02 3.60 0.00 1.82 16 3 C -0.16 -0.22 7.08 71.98 0.51 0.29 16 4 C -0.16 -2.90 8.39 71.98 0.60 -2.29 16 5 N -0.48 -7.86 2.53 -605.54 -1.53 -9.39 16 6 C 0.16 0.96 9.58 83.56 0.80 1.76 16 7 C -0.23 -1.37 9.99 21.99 0.22 -1.15 16 8 C 0.05 0.78 9.91 22.83 0.23 1.00 16 9 C -0.31 -8.75 4.85 -19.79 -0.10 -8.85 16 10 C 0.59 23.11 6.84 86.56 0.59 23.71 16 11 O -0.59 -29.92 17.40 -4.18 -0.07 -29.99 16 12 N -0.61 -21.10 3.33 -815.08 -2.71 -23.81 16 13 C 0.11 2.42 6.47 86.73 0.56 2.99 16 14 C -0.11 -2.43 6.41 31.78 0.20 -2.23 16 15 C -0.10 -3.39 3.07 -9.23 -0.03 -3.42 16 16 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 17 C 0.17 6.78 5.73 86.38 0.49 7.27 16 18 N -0.75 -40.98 5.55 -343.47 -1.91 -42.89 16 19 C -0.24 -14.34 9.99 84.03 0.84 -13.50 16 20 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 22 N -0.98 -64.45 13.06 21.65 0.28 -64.17 16 23 Si 0.98 48.44 29.55 68.60 2.03 50.46 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 C 0.12 4.76 6.33 87.02 0.55 5.32 16 28 C 0.52 15.32 6.84 85.16 0.58 15.90 16 29 O -0.59 -23.52 12.67 -4.94 -0.06 -23.58 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.07 6.12 -2.39 -0.01 1.05 16 33 H 0.09 -0.16 7.41 -2.39 -0.02 -0.17 16 34 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.09 -0.25 7.41 -2.38 -0.02 -0.26 16 36 H 0.04 1.09 6.12 -2.39 -0.01 1.08 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.22 -1.02 5.55 -2.91 -0.02 -1.04 16 40 H 0.20 -0.64 8.06 -2.92 -0.02 -0.67 16 41 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.10 1.89 8.04 -2.38 -0.02 1.87 16 45 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.03 1.21 7.98 -2.39 -0.02 1.19 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.37 22.16 7.67 -92.71 -0.71 21.45 16 49 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 50 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 51 H 0.07 2.71 7.93 -2.39 -0.02 2.70 16 Total: -1.00 -100.09 407.79 3.38 -96.72 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.22 Total: 24.67 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.14 Total: 21.99 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -5.87 Total: -140.26 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.14 Total: -53.58 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Total: -100.09 3.38 -96.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480667349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.148 kcal (2) G-P(sol) polarization free energy of solvation -100.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds