Wall clock time and date at job start Wed Apr 1 2020 05:30:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53001 * 109.46993 * 2 1
4 4 C 1.53002 * 109.47472 * 119.99800 * 2 1 3
5 5 N 1.46500 * 109.47514 * 240.00110 * 2 1 3
6 6 C 1.35435 * 119.46611 * 359.97438 * 5 2 1
7 7 C 1.35765 * 121.23052 * 180.02562 * 6 5 2
8 8 C 1.39467 * 120.12644 * 359.97409 * 7 6 5
9 9 C 1.39335 * 118.96558 * 0.02642 * 8 7 6
10 10 C 1.47082 * 120.59051 * 180.02562 * 9 8 7
11 11 O 1.21648 * 119.99928 * 255.26485 * 10 9 8
12 12 N 1.34773 * 119.99800 * 75.26139 * 10 9 8
13 13 C 1.47024 * 125.65336 * 5.17056 * 12 10 9
14 14 C 1.54318 * 107.27409 * 181.01969 * 13 12 10
15 15 C 1.55162 * 102.93902 * 22.19270 * 14 13 12
16 16 H 1.08997 * 111.00191 * 82.57495 * 15 14 13
17 17 C 1.53004 * 111.00280 * 206.38453 * 15 14 13
18 18 N 1.46494 * 109.47517 * 185.00391 * 17 15 14
19 19 C 1.36933 * 120.00490 * 179.97438 * 18 17 15
20 20 H 1.08005 * 119.99706 * 359.97438 * 19 18 17
21 21 C 1.38805 * 120.00342 * 179.97438 * 19 18 17
22 22 N 1.31624 * 120.00463 * 180.02562 * 21 19 18
23 23 Si 1.86800 * 119.99997 * 0.02562 * 21 19 18
24 24 H 1.48502 * 109.47548 * 89.99671 * 23 21 19
25 25 H 1.48503 * 109.47380 * 209.99827 * 23 21 19
26 26 H 1.48504 * 109.47010 * 329.99483 * 23 21 19
27 27 C 1.47422 * 125.64587 * 184.85762 * 12 10 9
28 28 C 1.34646 * 119.47743 * 179.72949 * 5 2 1
29 29 O 1.21893 * 120.10001 * 359.97438 * 28 5 2
30 30 H 1.09004 * 109.47211 * 60.00061 * 1 2 3
31 31 H 1.09000 * 109.46966 * 299.99966 * 1 2 3
32 32 H 1.09005 * 109.46904 * 180.02562 * 1 2 3
33 33 H 1.09000 * 109.47237 * 60.00200 * 3 2 1
34 34 H 1.09005 * 109.47076 * 179.97438 * 3 2 1
35 35 H 1.08995 * 109.47165 * 299.99796 * 3 2 1
36 36 H 1.09004 * 109.46465 * 59.99948 * 4 2 1
37 37 H 1.08994 * 109.47496 * 179.97438 * 4 2 1
38 38 H 1.08995 * 109.47371 * 300.00535 * 4 2 1
39 39 H 1.07995 * 119.38895 * 0.02562 * 6 5 2
40 40 H 1.07999 * 119.93403 * 179.97438 * 7 6 5
41 41 H 1.08004 * 120.51860 * 179.97438 * 8 7 6
42 42 H 1.09001 * 109.87898 * 300.43921 * 13 12 10
43 43 H 1.09002 * 109.88063 * 61.44688 * 13 12 10
44 44 H 1.09002 * 110.72054 * 140.55090 * 14 13 12
45 45 H 1.08995 * 110.72237 * 263.65321 * 14 13 12
46 46 H 1.09008 * 109.46986 * 305.00321 * 17 15 14
47 47 H 1.09007 * 109.47082 * 64.99726 * 17 15 14
48 48 H 0.97001 * 119.99541 * 359.97438 * 18 17 15
49 49 H 0.96995 * 120.00287 * 180.02562 * 22 21 19
50 50 H 1.08997 * 110.37120 * 274.75034 * 27 12 10
51 51 H 1.09002 * 110.36909 * 37.07274 * 27 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 2.0184 -0.6906 -1.1962
6 6 1.1288 -1.2016 -2.0803
7 6 1.5418 -1.8487 -3.2001
8 6 2.9038 -1.9982 -3.4600
9 6 3.8249 -1.4750 -2.5549
10 6 5.2698 -1.6117 -2.7939
11 8 5.9182 -2.4191 -2.1556
12 7 5.8752 -0.8425 -3.7203
13 6 5.2387 0.2411 -4.4833
14 6 6.3057 0.8176 -5.4375
15 6 7.3251 -0.3455 -5.5623
16 1 6.9972 -1.0744 -6.3034
17 6 8.7214 0.1827 -5.8972
18 7 9.6286 -0.9449 -6.1246
19 6 10.9407 -0.7150 -6.4416
20 1 11.3068 0.2977 -6.5245
21 6 11.8003 -1.7834 -6.6565
22 7 13.0617 -1.5625 -6.9607
23 14 11.1671 -3.5350 -6.5138
24 1 10.6695 -3.9909 -7.8366
25 1 12.2685 -4.4247 -6.0659
26 1 10.0598 -3.5821 -5.5254
27 6 7.2872 -0.9441 -4.1317
28 6 3.3444 -0.8027 -1.4015
29 8 4.1295 -0.3318 -0.5967
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 1.6766 1.9563 0.8900
34 1 3.1300 1.4425 0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6767 -1.7489 1.2492
37 1 3.1300 -0.7216 1.2490
38 1 1.6767 -0.2075 2.1392
39 1 0.0712 -1.0924 -1.8911
40 1 0.8142 -2.2485 -3.8909
41 1 3.2394 -2.5122 -4.3487
42 1 4.4010 -0.1531 -5.0585
43 1 4.8884 1.0173 -3.8029
44 1 5.8685 1.0529 -6.4079
45 1 6.7749 1.7004 -5.0033
46 1 8.6717 0.7961 -6.7970
47 1 9.0910 0.7848 -5.0671
48 1 9.2997 -1.8544 -6.0505
49 1 13.6623 -2.3091 -7.1112
50 1 7.9209 -0.3661 -3.4592
51 1 7.6032 -1.9872 -4.1490
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001480667350.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:30:17
Heat of formation + Delta-G solvation = -10.774538 kcal
Electronic energy + Delta-G solvation = -31234.375682 eV
Core-core repulsion = 27135.061683 eV
Total energy + Delta-G solvation = -4099.313999 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.15087 -39.89096 -37.81065 -37.25929 -36.76575 -34.78405 -32.77762 -32.06044
-30.81504 -30.31927 -28.93424 -28.35138 -27.83167 -25.97892 -24.81194 -23.91806
-22.97368 -21.67866 -21.16048 -20.26023 -19.52106 -18.03993 -17.61562 -17.48501
-17.15751 -16.39256 -16.11007 -15.92175 -15.52092 -14.87172 -14.65933 -14.54768
-14.37849 -14.13979 -13.81567 -13.71595 -13.44848 -13.13583 -12.87045 -12.73628
-12.68281 -12.63418 -12.54426 -12.46044 -12.35772 -12.22603 -11.99040 -11.90437
-11.70576 -11.68167 -11.64577 -10.91237 -10.66953 -10.60721 -10.51943 -10.36990
-10.12369 -10.07625 -9.77614 -9.54540 -8.85941 -8.55545 -8.29205 -7.19669
-5.72560 -3.08318 0.23636 1.50014 1.99549 2.70183 2.98500 3.29969
3.42996 3.47761 3.51094 3.90507 4.00670 4.20957 4.32540 4.38127
4.47079 4.57506 4.63480 4.64587 4.76859 4.78941 4.85715 4.93406
4.94989 5.13405 5.18856 5.20996 5.23606 5.33612 5.36254 5.44340
5.54590 5.55678 5.57404 5.60004 5.74421 5.80081 5.81348 5.84465
5.85898 5.88546 6.00875 6.10713 6.19384 6.24455 6.40791 6.63210
6.68541 6.75535 7.56359 7.71905 8.02786 8.21777 8.46255 9.25042
9.97599 10.16815 11.45740
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021270 B = 0.002288 C = 0.002263
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1316.122559 B =12234.433431 C =12369.094845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.145 3.855
3 C -0.165 4.165
4 C -0.165 4.165
5 N -0.483 5.483
6 C 0.141 3.859
7 C -0.236 4.236
8 C 0.021 3.979
9 C -0.249 4.249
10 C 0.599 3.401
11 O -0.525 6.525
12 N -0.612 5.612
13 C 0.106 3.894
14 C -0.123 4.123
15 C -0.109 4.109
16 H 0.085 0.915
17 C 0.169 3.831
18 N -0.757 5.757
19 C -0.244 4.244
20 H 0.090 0.910
21 C 0.004 3.996
22 N -0.934 5.934
23 Si 0.883 3.117
24 H -0.284 1.284
25 H -0.291 1.291
26 H -0.275 1.275
27 C 0.114 3.886
28 C 0.535 3.465
29 O -0.526 6.526
30 H 0.069 0.931
31 H 0.084 0.916
32 H 0.069 0.931
33 H 0.074 0.926
34 H 0.087 0.913
35 H 0.058 0.942
36 H 0.058 0.942
37 H 0.087 0.913
38 H 0.074 0.926
39 H 0.169 0.831
40 H 0.151 0.849
41 H 0.139 0.861
42 H 0.064 0.936
43 H 0.063 0.937
44 H 0.083 0.917
45 H 0.081 0.919
46 H 0.034 0.966
47 H 0.031 0.969
48 H 0.361 0.639
49 H 0.259 0.741
50 H 0.075 0.925
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -36.290 4.999 10.709 38.166
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.063 3.937
3 C -0.222 4.222
4 C -0.223 4.223
5 N -0.193 5.193
6 C 0.012 3.988
7 C -0.260 4.260
8 C -0.001 4.001
9 C -0.256 4.256
10 C 0.386 3.614
11 O -0.401 6.401
12 N -0.346 5.346
13 C -0.018 4.018
14 C -0.162 4.162
15 C -0.129 4.129
16 H 0.104 0.896
17 C 0.041 3.959
18 N -0.402 5.402
19 C -0.374 4.374
20 H 0.108 0.892
21 C -0.191 4.191
22 N -0.582 5.582
23 Si 0.713 3.287
24 H -0.211 1.211
25 H -0.217 1.217
26 H -0.201 1.201
27 C -0.008 4.008
28 C 0.336 3.664
29 O -0.406 6.406
30 H 0.088 0.912
31 H 0.102 0.898
32 H 0.088 0.912
33 H 0.093 0.907
34 H 0.106 0.894
35 H 0.077 0.923
36 H 0.077 0.923
37 H 0.106 0.894
38 H 0.093 0.907
39 H 0.186 0.814
40 H 0.169 0.831
41 H 0.157 0.843
42 H 0.083 0.917
43 H 0.082 0.918
44 H 0.102 0.898
45 H 0.099 0.901
46 H 0.051 0.949
47 H 0.049 0.951
48 H 0.194 0.806
49 H 0.069 0.931
50 H 0.093 0.907
51 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -35.231 4.983 11.671 37.447
hybrid contribution -0.508 -1.396 -0.085 1.488
sum -35.739 3.587 11.586 37.741
Atomic orbital electron populations
1.22308 0.92511 1.03218 1.04054 1.21036 0.94699 0.93742 0.84205
1.22245 1.04724 0.92721 1.02535 1.22243 1.04758 0.99965 0.95319
1.45743 1.07346 1.45754 1.20467 1.22253 0.96585 0.91140 0.88817
1.20560 0.96146 1.09104 1.00144 1.21827 0.92300 0.90134 0.95866
1.20893 0.94824 1.11034 0.98891 1.17026 0.85544 0.80220 0.78621
1.90835 1.65564 1.36811 1.46877 1.48462 1.12329 1.34252 1.39525
1.21996 0.96349 0.89399 0.94024 1.22634 0.95707 0.98543 0.99294
1.22685 0.96946 0.97355 0.95882 0.89649 1.20573 0.86129 0.90884
0.98273 1.42727 1.08321 1.02918 1.86255 1.19041 0.83939 0.94974
1.39410 0.89174 1.24668 0.95460 0.97381 1.01620 1.69701 1.03668
1.30448 1.54401 0.86566 0.78035 0.86253 0.77847 1.21115 1.21693
1.20147 1.22425 0.80769 1.02572 0.94994 1.16608 0.80709 0.82018
0.87078 1.90902 1.53508 1.49765 1.46449 0.91175 0.89762 0.91207
0.90744 0.89405 0.92272 0.92279 0.89406 0.90736 0.81431 0.83118
0.84309 0.91730 0.91821 0.89799 0.90074 0.94864 0.95129 0.80628
0.93078 0.90693 0.90279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.44 7.08 37.15 0.26 -0.18 16
2 C 0.15 0.96 1.02 -131.82 -0.13 0.83 16
3 C -0.16 -1.18 8.39 37.16 0.31 -0.87 16
4 C -0.17 -1.28 8.40 37.16 0.31 -0.97 16
5 N -0.48 -4.06 2.53 -105.39 -0.27 -4.33 16
6 C 0.14 0.73 9.58 -16.85 -0.16 0.57 16
7 C -0.24 -1.29 9.99 -40.01 -0.40 -1.69 16
8 C 0.02 0.19 9.75 -38.72 -0.38 -0.19 16
9 C -0.25 -3.27 4.85 -104.50 -0.51 -3.78 16
10 C 0.60 10.24 6.84 -12.67 -0.09 10.15 16
11 O -0.53 -11.36 17.40 5.24 0.09 -11.27 16
12 N -0.61 -9.35 3.32 -171.78 -0.57 -9.92 16
13 C 0.11 1.19 6.47 -3.07 -0.02 1.17 16
14 C -0.12 -1.39 6.41 -24.90 -0.16 -1.55 16
15 C -0.11 -1.64 3.06 -88.35 -0.27 -1.91 16
16 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
17 C 0.17 3.20 5.72 -4.04 -0.02 3.18 16
18 N -0.76 -18.24 5.35 -59.91 -0.32 -18.56 16
19 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16
20 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16
21 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16
22 N -0.93 -29.95 13.97 55.49 0.78 -29.17 16
23 Si 0.88 22.87 27.74 -169.99 -4.71 18.16 16
24 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16
25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16
26 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16
27 C 0.11 1.93 6.31 -2.41 -0.02 1.92 16
28 C 0.54 6.99 6.84 -14.92 -0.10 6.89 16
29 O -0.53 -8.70 12.67 5.02 0.06 -8.64 16
30 H 0.07 0.11 7.41 -51.93 -0.38 -0.27 16
31 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16
32 H 0.07 0.13 7.41 -51.93 -0.38 -0.25 16
33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.09 0.94 6.10 -51.93 -0.32 0.62 16
35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.09 1.01 6.14 -51.93 -0.32 0.69 16
38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.17 0.22 5.55 -52.49 -0.29 -0.07 16
40 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16
41 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16
42 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16
43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
45 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16
46 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16
47 H 0.03 0.60 7.96 -51.93 -0.41 0.18 16
48 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16
49 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16
50 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16
51 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16
LS Contribution 404.30 15.07 6.09 6.09
Total: -1.00 -39.32 404.30 -8.71 -48.03
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: -8.24 Total: 3.20 kcal
Atomic # 6 Polarization: 8.04 SS G_CDS: -1.62 Total: 6.41 kcal
Atomic # 7 Polarization: -61.60 SS G_CDS: -0.38 Total: -61.98 kcal
Atomic # 8 Polarization: -20.07 SS G_CDS: 0.15 Total: -19.91 kcal
Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -39.32 -8.71 -48.03 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480667350.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.255 kcal
(2) G-P(sol) polarization free energy of solvation -39.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.030 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds