Wall clock time and date at job start Wed Apr 1 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 C 1.53002 * 109.47472 * 119.99800 * 2 1 3 5 5 N 1.46500 * 109.47514 * 240.00110 * 2 1 3 6 6 C 1.35435 * 119.46611 * 359.97438 * 5 2 1 7 7 C 1.35765 * 121.23052 * 180.02562 * 6 5 2 8 8 C 1.39467 * 120.12644 * 359.97409 * 7 6 5 9 9 C 1.39335 * 118.96558 * 0.02642 * 8 7 6 10 10 C 1.47082 * 120.59051 * 180.02562 * 9 8 7 11 11 O 1.21648 * 119.99928 * 255.26485 * 10 9 8 12 12 N 1.34773 * 119.99800 * 75.26139 * 10 9 8 13 13 C 1.47024 * 125.65336 * 5.17056 * 12 10 9 14 14 C 1.54318 * 107.27409 * 181.01969 * 13 12 10 15 15 C 1.55162 * 102.93902 * 22.19270 * 14 13 12 16 16 H 1.08997 * 111.00191 * 82.57495 * 15 14 13 17 17 C 1.53004 * 111.00280 * 206.38453 * 15 14 13 18 18 N 1.46494 * 109.47517 * 185.00391 * 17 15 14 19 19 C 1.36933 * 120.00490 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99706 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00342 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00463 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99997 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47548 * 89.99671 * 23 21 19 25 25 H 1.48503 * 109.47380 * 209.99827 * 23 21 19 26 26 H 1.48504 * 109.47010 * 329.99483 * 23 21 19 27 27 C 1.47422 * 125.64587 * 184.85762 * 12 10 9 28 28 C 1.34646 * 119.47743 * 179.72949 * 5 2 1 29 29 O 1.21893 * 120.10001 * 359.97438 * 28 5 2 30 30 H 1.09004 * 109.47211 * 60.00061 * 1 2 3 31 31 H 1.09000 * 109.46966 * 299.99966 * 1 2 3 32 32 H 1.09005 * 109.46904 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47237 * 60.00200 * 3 2 1 34 34 H 1.09005 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47165 * 299.99796 * 3 2 1 36 36 H 1.09004 * 109.46465 * 59.99948 * 4 2 1 37 37 H 1.08994 * 109.47496 * 179.97438 * 4 2 1 38 38 H 1.08995 * 109.47371 * 300.00535 * 4 2 1 39 39 H 1.07995 * 119.38895 * 0.02562 * 6 5 2 40 40 H 1.07999 * 119.93403 * 179.97438 * 7 6 5 41 41 H 1.08004 * 120.51860 * 179.97438 * 8 7 6 42 42 H 1.09001 * 109.87898 * 300.43921 * 13 12 10 43 43 H 1.09002 * 109.88063 * 61.44688 * 13 12 10 44 44 H 1.09002 * 110.72054 * 140.55090 * 14 13 12 45 45 H 1.08995 * 110.72237 * 263.65321 * 14 13 12 46 46 H 1.09008 * 109.46986 * 305.00321 * 17 15 14 47 47 H 1.09007 * 109.47082 * 64.99726 * 17 15 14 48 48 H 0.97001 * 119.99541 * 359.97438 * 18 17 15 49 49 H 0.96995 * 120.00287 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.37120 * 274.75034 * 27 12 10 51 51 H 1.09002 * 110.36909 * 37.07274 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.0184 -0.6906 -1.1962 6 6 1.1288 -1.2016 -2.0803 7 6 1.5418 -1.8487 -3.2001 8 6 2.9038 -1.9982 -3.4600 9 6 3.8249 -1.4750 -2.5549 10 6 5.2698 -1.6117 -2.7939 11 8 5.9182 -2.4191 -2.1556 12 7 5.8752 -0.8425 -3.7203 13 6 5.2387 0.2411 -4.4833 14 6 6.3057 0.8176 -5.4375 15 6 7.3251 -0.3455 -5.5623 16 1 6.9972 -1.0744 -6.3034 17 6 8.7214 0.1827 -5.8972 18 7 9.6286 -0.9449 -6.1246 19 6 10.9407 -0.7150 -6.4416 20 1 11.3068 0.2977 -6.5245 21 6 11.8003 -1.7834 -6.6565 22 7 13.0617 -1.5625 -6.9607 23 14 11.1671 -3.5350 -6.5138 24 1 10.6695 -3.9909 -7.8366 25 1 12.2685 -4.4247 -6.0659 26 1 10.0598 -3.5821 -5.5254 27 6 7.2872 -0.9441 -4.1317 28 6 3.3444 -0.8027 -1.4015 29 8 4.1295 -0.3318 -0.5967 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2492 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -0.2075 2.1392 39 1 0.0712 -1.0924 -1.8911 40 1 0.8142 -2.2485 -3.8909 41 1 3.2394 -2.5122 -4.3487 42 1 4.4010 -0.1531 -5.0585 43 1 4.8884 1.0173 -3.8029 44 1 5.8685 1.0529 -6.4079 45 1 6.7749 1.7004 -5.0033 46 1 8.6717 0.7961 -6.7970 47 1 9.0910 0.7848 -5.0671 48 1 9.2997 -1.8544 -6.0505 49 1 13.6623 -2.3091 -7.1112 50 1 7.9209 -0.3661 -3.4592 51 1 7.6032 -1.9872 -4.1490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480667350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:17 Heat of formation + Delta-G solvation = -10.774538 kcal Electronic energy + Delta-G solvation = -31234.375682 eV Core-core repulsion = 27135.061683 eV Total energy + Delta-G solvation = -4099.313999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15087 -39.89096 -37.81065 -37.25929 -36.76575 -34.78405 -32.77762 -32.06044 -30.81504 -30.31927 -28.93424 -28.35138 -27.83167 -25.97892 -24.81194 -23.91806 -22.97368 -21.67866 -21.16048 -20.26023 -19.52106 -18.03993 -17.61562 -17.48501 -17.15751 -16.39256 -16.11007 -15.92175 -15.52092 -14.87172 -14.65933 -14.54768 -14.37849 -14.13979 -13.81567 -13.71595 -13.44848 -13.13583 -12.87045 -12.73628 -12.68281 -12.63418 -12.54426 -12.46044 -12.35772 -12.22603 -11.99040 -11.90437 -11.70576 -11.68167 -11.64577 -10.91237 -10.66953 -10.60721 -10.51943 -10.36990 -10.12369 -10.07625 -9.77614 -9.54540 -8.85941 -8.55545 -8.29205 -7.19669 -5.72560 -3.08318 0.23636 1.50014 1.99549 2.70183 2.98500 3.29969 3.42996 3.47761 3.51094 3.90507 4.00670 4.20957 4.32540 4.38127 4.47079 4.57506 4.63480 4.64587 4.76859 4.78941 4.85715 4.93406 4.94989 5.13405 5.18856 5.20996 5.23606 5.33612 5.36254 5.44340 5.54590 5.55678 5.57404 5.60004 5.74421 5.80081 5.81348 5.84465 5.85898 5.88546 6.00875 6.10713 6.19384 6.24455 6.40791 6.63210 6.68541 6.75535 7.56359 7.71905 8.02786 8.21777 8.46255 9.25042 9.97599 10.16815 11.45740 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.002288 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.122559 B =12234.433431 C =12369.094845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 C -0.165 4.165 4 C -0.165 4.165 5 N -0.483 5.483 6 C 0.141 3.859 7 C -0.236 4.236 8 C 0.021 3.979 9 C -0.249 4.249 10 C 0.599 3.401 11 O -0.525 6.525 12 N -0.612 5.612 13 C 0.106 3.894 14 C -0.123 4.123 15 C -0.109 4.109 16 H 0.085 0.915 17 C 0.169 3.831 18 N -0.757 5.757 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.275 1.275 27 C 0.114 3.886 28 C 0.535 3.465 29 O -0.526 6.526 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.031 0.969 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.075 0.925 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.290 4.999 10.709 38.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.063 3.937 3 C -0.222 4.222 4 C -0.223 4.223 5 N -0.193 5.193 6 C 0.012 3.988 7 C -0.260 4.260 8 C -0.001 4.001 9 C -0.256 4.256 10 C 0.386 3.614 11 O -0.401 6.401 12 N -0.346 5.346 13 C -0.018 4.018 14 C -0.162 4.162 15 C -0.129 4.129 16 H 0.104 0.896 17 C 0.041 3.959 18 N -0.402 5.402 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.201 1.201 27 C -0.008 4.008 28 C 0.336 3.664 29 O -0.406 6.406 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -35.231 4.983 11.671 37.447 hybrid contribution -0.508 -1.396 -0.085 1.488 sum -35.739 3.587 11.586 37.741 Atomic orbital electron populations 1.22308 0.92511 1.03218 1.04054 1.21036 0.94699 0.93742 0.84205 1.22245 1.04724 0.92721 1.02535 1.22243 1.04758 0.99965 0.95319 1.45743 1.07346 1.45754 1.20467 1.22253 0.96585 0.91140 0.88817 1.20560 0.96146 1.09104 1.00144 1.21827 0.92300 0.90134 0.95866 1.20893 0.94824 1.11034 0.98891 1.17026 0.85544 0.80220 0.78621 1.90835 1.65564 1.36811 1.46877 1.48462 1.12329 1.34252 1.39525 1.21996 0.96349 0.89399 0.94024 1.22634 0.95707 0.98543 0.99294 1.22685 0.96946 0.97355 0.95882 0.89649 1.20573 0.86129 0.90884 0.98273 1.42727 1.08321 1.02918 1.86255 1.19041 0.83939 0.94974 1.39410 0.89174 1.24668 0.95460 0.97381 1.01620 1.69701 1.03668 1.30448 1.54401 0.86566 0.78035 0.86253 0.77847 1.21115 1.21693 1.20147 1.22425 0.80769 1.02572 0.94994 1.16608 0.80709 0.82018 0.87078 1.90902 1.53508 1.49765 1.46449 0.91175 0.89762 0.91207 0.90744 0.89405 0.92272 0.92279 0.89406 0.90736 0.81431 0.83118 0.84309 0.91730 0.91821 0.89799 0.90074 0.94864 0.95129 0.80628 0.93078 0.90693 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 7.08 37.15 0.26 -0.18 16 2 C 0.15 0.96 1.02 -131.82 -0.13 0.83 16 3 C -0.16 -1.18 8.39 37.16 0.31 -0.87 16 4 C -0.17 -1.28 8.40 37.16 0.31 -0.97 16 5 N -0.48 -4.06 2.53 -105.39 -0.27 -4.33 16 6 C 0.14 0.73 9.58 -16.85 -0.16 0.57 16 7 C -0.24 -1.29 9.99 -40.01 -0.40 -1.69 16 8 C 0.02 0.19 9.75 -38.72 -0.38 -0.19 16 9 C -0.25 -3.27 4.85 -104.50 -0.51 -3.78 16 10 C 0.60 10.24 6.84 -12.67 -0.09 10.15 16 11 O -0.53 -11.36 17.40 5.24 0.09 -11.27 16 12 N -0.61 -9.35 3.32 -171.78 -0.57 -9.92 16 13 C 0.11 1.19 6.47 -3.07 -0.02 1.17 16 14 C -0.12 -1.39 6.41 -24.90 -0.16 -1.55 16 15 C -0.11 -1.64 3.06 -88.35 -0.27 -1.91 16 16 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 17 C 0.17 3.20 5.72 -4.04 -0.02 3.18 16 18 N -0.76 -18.24 5.35 -59.91 -0.32 -18.56 16 19 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 20 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -29.95 13.97 55.49 0.78 -29.17 16 23 Si 0.88 22.87 27.74 -169.99 -4.71 18.16 16 24 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 27 C 0.11 1.93 6.31 -2.41 -0.02 1.92 16 28 C 0.54 6.99 6.84 -14.92 -0.10 6.89 16 29 O -0.53 -8.70 12.67 5.02 0.06 -8.64 16 30 H 0.07 0.11 7.41 -51.93 -0.38 -0.27 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.13 7.41 -51.93 -0.38 -0.25 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.94 6.10 -51.93 -0.32 0.62 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 1.01 6.14 -51.93 -0.32 0.69 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.17 0.22 5.55 -52.49 -0.29 -0.07 16 40 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 41 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 46 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 47 H 0.03 0.60 7.96 -51.93 -0.41 0.18 16 48 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 49 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 50 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 51 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -39.32 404.30 -8.71 -48.03 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.24 Total: 3.20 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.62 Total: 6.41 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.38 Total: -61.98 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.15 Total: -19.91 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.32 -8.71 -48.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480667350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.255 kcal (2) G-P(sol) polarization free energy of solvation -39.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds