Wall clock time and date at job start Wed Apr 1 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 C 1.53002 * 109.47472 * 119.99800 * 2 1 3 5 5 N 1.46500 * 109.47514 * 240.00110 * 2 1 3 6 6 C 1.35435 * 119.46611 * 359.97438 * 5 2 1 7 7 C 1.35765 * 121.23052 * 180.02562 * 6 5 2 8 8 C 1.39467 * 120.12644 * 359.97409 * 7 6 5 9 9 C 1.39335 * 118.96558 * 0.02642 * 8 7 6 10 10 C 1.47082 * 120.59051 * 180.02562 * 9 8 7 11 11 O 1.21648 * 119.99928 * 255.26485 * 10 9 8 12 12 N 1.34773 * 119.99800 * 75.26139 * 10 9 8 13 13 C 1.47024 * 125.65336 * 5.17056 * 12 10 9 14 14 C 1.54318 * 107.27409 * 181.01969 * 13 12 10 15 15 C 1.55162 * 102.93902 * 22.19270 * 14 13 12 16 16 H 1.08997 * 111.00191 * 82.57495 * 15 14 13 17 17 C 1.53004 * 111.00280 * 206.38453 * 15 14 13 18 18 N 1.46494 * 109.47517 * 185.00391 * 17 15 14 19 19 C 1.36933 * 120.00490 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99706 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00342 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00463 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99997 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47548 * 89.99671 * 23 21 19 25 25 H 1.48503 * 109.47380 * 209.99827 * 23 21 19 26 26 H 1.48504 * 109.47010 * 329.99483 * 23 21 19 27 27 C 1.47422 * 125.64587 * 184.85762 * 12 10 9 28 28 C 1.34646 * 119.47743 * 179.72949 * 5 2 1 29 29 O 1.21893 * 120.10001 * 359.97438 * 28 5 2 30 30 H 1.09004 * 109.47211 * 60.00061 * 1 2 3 31 31 H 1.09000 * 109.46966 * 299.99966 * 1 2 3 32 32 H 1.09005 * 109.46904 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47237 * 60.00200 * 3 2 1 34 34 H 1.09005 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47165 * 299.99796 * 3 2 1 36 36 H 1.09004 * 109.46465 * 59.99948 * 4 2 1 37 37 H 1.08994 * 109.47496 * 179.97438 * 4 2 1 38 38 H 1.08995 * 109.47371 * 300.00535 * 4 2 1 39 39 H 1.07995 * 119.38895 * 0.02562 * 6 5 2 40 40 H 1.07999 * 119.93403 * 179.97438 * 7 6 5 41 41 H 1.08004 * 120.51860 * 179.97438 * 8 7 6 42 42 H 1.09001 * 109.87898 * 300.43921 * 13 12 10 43 43 H 1.09002 * 109.88063 * 61.44688 * 13 12 10 44 44 H 1.09002 * 110.72054 * 140.55090 * 14 13 12 45 45 H 1.08995 * 110.72237 * 263.65321 * 14 13 12 46 46 H 1.09008 * 109.46986 * 305.00321 * 17 15 14 47 47 H 1.09007 * 109.47082 * 64.99726 * 17 15 14 48 48 H 0.97001 * 119.99541 * 359.97438 * 18 17 15 49 49 H 0.96995 * 120.00287 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.37120 * 274.75034 * 27 12 10 51 51 H 1.09002 * 110.36909 * 37.07274 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.0184 -0.6906 -1.1962 6 6 1.1288 -1.2016 -2.0803 7 6 1.5418 -1.8487 -3.2001 8 6 2.9038 -1.9982 -3.4600 9 6 3.8249 -1.4750 -2.5549 10 6 5.2698 -1.6117 -2.7939 11 8 5.9182 -2.4191 -2.1556 12 7 5.8752 -0.8425 -3.7203 13 6 5.2387 0.2411 -4.4833 14 6 6.3057 0.8176 -5.4375 15 6 7.3251 -0.3455 -5.5623 16 1 6.9972 -1.0744 -6.3034 17 6 8.7214 0.1827 -5.8972 18 7 9.6286 -0.9449 -6.1246 19 6 10.9407 -0.7150 -6.4416 20 1 11.3068 0.2977 -6.5245 21 6 11.8003 -1.7834 -6.6565 22 7 13.0617 -1.5625 -6.9607 23 14 11.1671 -3.5350 -6.5138 24 1 10.6695 -3.9909 -7.8366 25 1 12.2685 -4.4247 -6.0659 26 1 10.0598 -3.5821 -5.5254 27 6 7.2872 -0.9441 -4.1317 28 6 3.3444 -0.8027 -1.4015 29 8 4.1295 -0.3318 -0.5967 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2492 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -0.2075 2.1392 39 1 0.0712 -1.0924 -1.8911 40 1 0.8142 -2.2485 -3.8909 41 1 3.2394 -2.5122 -4.3487 42 1 4.4010 -0.1531 -5.0585 43 1 4.8884 1.0173 -3.8029 44 1 5.8685 1.0529 -6.4079 45 1 6.7749 1.7004 -5.0033 46 1 8.6717 0.7961 -6.7970 47 1 9.0910 0.7848 -5.0671 48 1 9.2997 -1.8544 -6.0505 49 1 13.6623 -2.3091 -7.1112 50 1 7.9209 -0.3661 -3.4592 51 1 7.6032 -1.9872 -4.1490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480667350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:16 Heat of formation + Delta-G solvation = -39.344708 kcal Electronic energy + Delta-G solvation = -31235.614578 eV Core-core repulsion = 27135.061683 eV Total energy + Delta-G solvation = -4100.552895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.85178 -41.05929 -38.97967 -38.15837 -37.44849 -36.60546 -34.11855 -33.28102 -32.33868 -31.11437 -30.20581 -28.79576 -28.41212 -27.41190 -25.71418 -25.03624 -24.07350 -23.25764 -21.85962 -21.56930 -20.52517 -19.67174 -18.65844 -18.33850 -18.06017 -17.54084 -16.93783 -16.74720 -16.58128 -16.54585 -15.71815 -15.60505 -15.34012 -15.22649 -14.96434 -14.85471 -14.65876 -14.24188 -14.15899 -13.78909 -13.66259 -13.61875 -13.49356 -13.20548 -13.14744 -13.10054 -13.04805 -12.84485 -12.79798 -12.62890 -12.24879 -12.19814 -12.15401 -12.03362 -11.96475 -11.81131 -11.65372 -11.33142 -11.02591 -11.00565 -10.75792 -9.79758 -9.32101 -9.00788 -8.05469 -5.38351 -0.41006 0.85226 1.18982 1.34255 1.38137 1.44216 1.67188 1.95521 2.44980 2.52081 3.22665 3.29006 3.44132 3.56841 3.61034 3.71988 3.76772 3.78447 3.87770 3.89315 3.98184 4.00879 4.21289 4.28568 4.35370 4.46721 4.53721 4.58128 4.59275 4.60240 4.70704 4.75125 4.79309 4.81509 4.84239 4.93297 4.94911 4.99779 5.01670 5.12203 5.14700 5.21727 5.23738 5.25048 5.29365 5.36929 5.58474 5.73555 6.04257 6.18797 6.39932 6.92885 6.99825 7.05101 7.81689 7.99119 9.16003 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.002288 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.122559 B =12234.433431 C =12369.094845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 C -0.162 4.162 4 C -0.164 4.164 5 N -0.478 5.478 6 C 0.160 3.840 7 C -0.232 4.232 8 C 0.049 3.951 9 C -0.308 4.308 10 C 0.593 3.407 11 O -0.594 6.594 12 N -0.611 5.611 13 C 0.106 3.894 14 C -0.111 4.111 15 C -0.095 4.095 16 H 0.097 0.903 17 C 0.165 3.835 18 N -0.761 5.761 19 C -0.232 4.232 20 H 0.061 0.939 21 C -0.063 4.063 22 N -0.982 5.982 23 Si 0.951 3.049 24 H -0.270 1.270 25 H -0.297 1.297 26 H -0.263 1.263 27 C 0.112 3.888 28 C 0.524 3.476 29 O -0.585 6.585 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.094 0.906 39 H 0.222 0.778 40 H 0.198 0.802 41 H 0.153 0.847 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.022 0.978 48 H 0.364 0.636 49 H 0.258 0.742 50 H 0.051 0.949 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -43.050 4.942 9.332 44.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 C -0.219 4.219 4 C -0.222 4.222 5 N -0.185 5.185 6 C 0.031 3.969 7 C -0.253 4.253 8 C 0.026 3.974 9 C -0.315 4.315 10 C 0.383 3.617 11 O -0.474 6.474 12 N -0.343 5.343 13 C -0.015 4.015 14 C -0.149 4.149 15 C -0.114 4.114 16 H 0.115 0.885 17 C 0.039 3.961 18 N -0.407 5.407 19 C -0.363 4.363 20 H 0.079 0.921 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.778 3.222 24 H -0.196 1.196 25 H -0.223 1.223 26 H -0.189 1.189 27 C -0.011 4.011 28 C 0.327 3.673 29 O -0.471 6.471 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.238 0.762 40 H 0.215 0.785 41 H 0.170 0.830 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.139 0.861 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.040 0.960 48 H 0.197 0.803 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -42.097 4.979 10.264 43.616 hybrid contribution 1.474 -1.265 0.385 1.980 sum -40.623 3.713 10.649 42.160 Atomic orbital electron populations 1.22344 0.88224 1.04970 1.05954 1.21287 0.97593 0.92575 0.82773 1.22198 1.01898 0.93893 1.03958 1.22213 1.01746 1.00857 0.97383 1.45816 1.06315 1.44996 1.21417 1.23247 0.98262 0.88173 0.87246 1.21107 0.95037 1.08309 1.00864 1.22180 0.93281 0.87209 0.94722 1.20502 0.92807 1.16519 1.01658 1.17815 0.87380 0.79023 0.77530 1.90764 1.67663 1.39725 1.49282 1.48586 1.11551 1.34758 1.39433 1.22229 0.97002 0.88424 0.93879 1.22667 0.94349 0.96701 1.01163 1.22511 0.95561 0.99073 0.94287 0.88494 1.20757 0.87378 0.89583 0.98348 1.42792 1.07356 1.04550 1.85968 1.19057 0.85949 0.93680 1.37614 0.92083 1.25462 0.95701 1.01866 1.02418 1.69869 1.05175 1.31625 1.56584 0.85471 0.77468 0.80642 0.78585 1.19556 1.22336 1.18853 1.22260 0.82115 1.00579 0.96183 1.16715 0.82083 0.81931 0.86613 1.90873 1.55389 1.52550 1.48279 0.88903 0.88400 0.89428 0.88920 0.93862 0.91152 0.91897 0.94150 0.88698 0.76189 0.78470 0.82950 0.88332 0.91466 0.86115 0.90016 0.93512 0.96003 0.80338 0.93316 0.93080 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.00 7.08 71.98 0.51 0.51 16 2 C 0.14 1.55 1.02 3.60 0.00 1.55 16 3 C -0.16 -2.20 8.39 71.98 0.60 -1.60 16 4 C -0.16 -2.53 8.40 71.98 0.60 -1.93 16 5 N -0.48 -7.00 2.53 -605.54 -1.53 -8.53 16 6 C 0.16 0.79 9.58 83.56 0.80 1.59 16 7 C -0.23 -1.21 9.99 21.99 0.22 -0.99 16 8 C 0.05 0.72 9.75 22.83 0.22 0.94 16 9 C -0.31 -8.14 4.85 -19.79 -0.10 -8.24 16 10 C 0.59 21.57 6.84 86.56 0.59 22.17 16 11 O -0.59 -28.20 17.40 -4.18 -0.07 -28.27 16 12 N -0.61 -19.25 3.32 -815.63 -2.71 -21.97 16 13 C 0.11 2.21 6.47 86.73 0.56 2.77 16 14 C -0.11 -2.21 6.41 31.78 0.20 -2.01 16 15 C -0.09 -2.77 3.06 -9.32 -0.03 -2.80 16 16 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 17 C 0.17 6.26 5.72 86.38 0.49 6.75 16 18 N -0.76 -37.01 5.35 -343.45 -1.84 -38.85 16 19 C -0.23 -13.72 10.47 84.03 0.88 -12.84 16 20 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 21 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 22 N -0.98 -64.92 13.97 21.65 0.30 -64.62 16 23 Si 0.95 48.22 27.74 68.60 1.90 50.12 16 24 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 26 H -0.26 -12.66 6.52 99.48 0.65 -12.01 16 27 C 0.11 3.98 6.31 86.93 0.55 4.53 16 28 C 0.52 14.11 6.84 85.17 0.58 14.69 16 29 O -0.59 -21.51 12.67 -4.97 -0.06 -21.57 16 30 H 0.09 -0.35 7.41 -2.38 -0.02 -0.37 16 31 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.09 -0.25 7.41 -2.38 -0.02 -0.26 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 1.01 6.10 -2.38 -0.01 1.00 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.04 1.03 6.14 -2.39 -0.01 1.02 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.22 -1.22 5.55 -2.91 -0.02 -1.23 16 40 H 0.20 -0.67 8.06 -2.91 -0.02 -0.70 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.10 1.41 7.98 -2.39 -0.02 1.39 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 46 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.02 0.88 7.96 -2.38 -0.02 0.86 16 48 H 0.36 17.26 5.53 -92.71 -0.51 16.74 16 49 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 50 H 0.05 2.02 7.91 -2.39 -0.02 2.00 16 51 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 Total: -1.00 -98.65 404.30 3.51 -95.14 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.36 Total: 16.86 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 7.17 Total: 21.68 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -5.78 Total: -133.96 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.14 Total: -49.84 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.90 Total: 50.12 kcal Total: -98.65 3.51 -95.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480667350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.796 kcal (2) G-P(sol) polarization free energy of solvation -98.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds