Wall clock time and date at job start Wed Apr 1 2020 04:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99873 * 2 1 4 4 O 1.21549 * 120.00238 * 359.97438 * 3 2 1 5 5 C 1.47865 * 120.00138 * 179.97438 * 3 2 1 6 6 C 1.39712 * 120.07162 * 0.02562 * 5 3 2 7 7 C 1.38058 * 120.14228 * 180.02562 * 6 5 3 8 8 C 1.38097 * 120.29817 * 359.94704 * 7 6 5 9 9 C 1.39661 * 120.14423 * 0.02776 * 8 7 6 10 10 C 1.47866 * 120.07510 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00208 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99519 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99693 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47073 * 324.99560 * 13 12 10 15 15 C 1.53002 * 109.47035 * 204.99878 * 13 12 10 16 16 N 1.46499 * 109.47138 * 54.99480 * 15 13 12 17 17 C 1.36941 * 119.99763 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00323 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99491 * 180.02562 * 17 16 15 20 20 N 1.31608 * 120.00381 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99517 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47225 * 59.99642 * 21 19 17 23 23 H 1.48501 * 109.46766 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46939 * 299.99783 * 21 19 17 25 25 C 1.52997 * 109.47289 * 84.99802 * 13 12 10 26 26 C 1.53001 * 109.46729 * 294.99928 * 25 13 12 27 27 C 1.53008 * 109.46897 * 175.00328 * 26 25 13 28 28 C 1.53002 * 109.47410 * 294.99729 * 26 25 13 29 29 C 1.39294 * 120.07414 * 180.27453 * 5 3 2 30 30 H 1.08997 * 109.46952 * 300.00229 * 1 2 3 31 31 H 1.09001 * 109.47184 * 60.00243 * 1 2 3 32 32 H 1.09003 * 109.46545 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00146 * 179.97438 * 2 1 3 34 34 H 1.08003 * 119.92680 * 0.02562 * 6 5 3 35 35 H 1.08004 * 119.84625 * 179.97438 * 7 6 5 36 36 H 1.07993 * 119.92693 * 180.02562 * 8 7 6 37 37 H 0.97000 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.47089 * 174.99822 * 15 13 12 39 39 H 1.09000 * 109.47173 * 294.99899 * 15 13 12 40 40 H 0.97006 * 120.00082 * 0.02562 * 16 15 13 41 41 H 0.97003 * 120.00244 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47192 * 54.99783 * 25 13 12 43 43 H 1.09000 * 109.46875 * 175.00185 * 25 13 12 44 44 H 1.08995 * 109.47488 * 55.00460 * 26 25 13 45 45 H 1.08997 * 109.47398 * 59.99527 * 27 26 25 46 46 H 1.08998 * 109.47102 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.46586 * 299.99701 * 27 26 25 48 48 H 1.09001 * 109.46825 * 60.00283 * 28 26 25 49 49 H 1.08998 * 109.47316 * 180.02562 * 28 26 25 50 50 H 1.08997 * 109.46944 * 300.00508 * 28 26 25 51 51 H 1.07998 * 120.14366 * 359.97438 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3176 -0.0417 0.0006 7 6 5.6982 -0.0434 0.0016 8 6 6.3963 1.1481 0.0016 9 6 5.7088 2.3638 0.0011 10 6 6.4579 3.6387 0.0005 11 8 5.8581 4.6960 -0.0004 12 7 7.8056 3.6284 -0.0001 13 6 8.5478 4.8915 -0.0001 14 1 8.0058 5.6314 -0.5892 15 6 9.9331 4.6690 -0.6103 16 7 9.7905 4.0752 -1.9419 17 6 10.9035 3.7852 -2.6851 18 1 11.8865 3.9939 -2.2893 19 6 10.7683 3.2229 -3.9471 20 7 9.5705 2.9691 -4.4295 21 14 12.2867 2.8267 -4.9605 22 1 13.1340 1.8549 -4.2236 23 1 11.8746 2.2389 -6.2604 24 1 13.0586 4.0720 -5.2033 25 6 8.6983 5.3947 1.4369 26 6 7.3191 5.7355 2.0049 27 6 7.4557 6.1195 3.4797 28 6 6.7224 6.9092 1.2256 29 6 4.3155 2.3727 0.0063 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7776 -0.9771 -0.0003 35 1 6.2346 -0.9808 0.0021 36 1 7.4762 1.1399 0.0020 37 1 8.2841 2.7846 0.0003 38 1 10.4517 5.6242 -0.6921 39 1 10.5074 3.9972 0.0275 40 1 8.9075 3.8880 -2.2976 41 1 9.4760 2.5765 -5.3115 42 1 9.1608 4.6188 2.0469 43 1 9.3254 6.2861 1.4459 44 1 6.6645 4.8688 1.9143 45 1 8.1104 6.9862 3.5704 46 1 6.4733 6.3628 3.8843 47 1 7.8808 5.2834 4.0349 48 1 6.6251 6.6357 0.1750 49 1 5.7401 7.1523 1.6306 50 1 7.3771 7.7759 1.3163 51 1 3.7790 3.3100 0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482402178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:31 Heat of formation + Delta-G solvation = -42.249805 kcal Electronic energy + Delta-G solvation = -30934.322167 eV Core-core repulsion = 26833.643298 eV Total energy + Delta-G solvation = -4100.678869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.60163 -39.80290 -38.19688 -36.54845 -34.96434 -34.94049 -33.54695 -31.97905 -31.19348 -30.84728 -29.05054 -27.18838 -26.85026 -25.56366 -24.30181 -23.36400 -22.69339 -21.35455 -20.72642 -20.01969 -19.66370 -18.66392 -17.21417 -16.67586 -16.36516 -16.26619 -15.75078 -15.60464 -15.44160 -14.77732 -14.56852 -14.36139 -14.11913 -13.88695 -13.83019 -13.53409 -13.44856 -13.25512 -13.01444 -12.89708 -12.65809 -12.44162 -12.13976 -12.08618 -11.97777 -11.91684 -11.48406 -11.45512 -11.03647 -10.97113 -10.81892 -10.51903 -10.24639 -10.24169 -10.22341 -10.01010 -9.73436 -9.53915 -9.50034 -9.14906 -9.14004 -8.93657 -8.59905 -6.98630 -5.79984 -3.10105 0.52666 0.98140 2.50372 2.87057 3.17895 3.40392 3.44111 3.46146 3.46728 3.88255 4.39306 4.52202 4.55447 4.67841 4.86763 4.92138 5.00814 5.04103 5.19179 5.20123 5.21359 5.25570 5.42017 5.49739 5.52001 5.61766 5.66491 5.73207 5.75029 5.90197 5.97577 6.02344 6.05989 6.07670 6.10806 6.13863 6.14271 6.17574 6.21650 6.31877 6.45055 6.50878 6.59774 6.66041 6.70894 6.88079 6.95642 7.15285 7.65416 7.84686 7.94777 8.37500 8.52250 9.49396 10.05256 10.40766 11.41941 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008171 B = 0.003224 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.823176 B = 8682.414057 C =11257.850219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.530 6.530 5 C -0.151 4.151 6 C -0.068 4.068 7 C -0.132 4.132 8 C -0.053 4.053 9 C -0.132 4.132 10 C 0.556 3.444 11 O -0.527 6.527 12 N -0.703 5.703 13 C 0.136 3.864 14 H 0.093 0.907 15 C 0.144 3.856 16 N -0.731 5.731 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.122 4.122 26 C -0.093 4.093 27 C -0.146 4.146 28 C -0.139 4.139 29 C -0.001 4.001 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.402 0.598 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.038 0.962 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 -8.098 14.712 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.348 3.652 4 O -0.407 6.407 5 C -0.154 4.154 6 C -0.087 4.087 7 C -0.150 4.150 8 C -0.072 4.072 9 C -0.135 4.135 10 C 0.342 3.658 11 O -0.406 6.406 12 N -0.354 5.354 13 C 0.032 3.968 14 H 0.111 0.889 15 C 0.016 3.984 16 N -0.376 5.376 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.161 4.161 26 C -0.112 4.112 27 C -0.203 4.203 28 C -0.196 4.196 29 C -0.021 4.021 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.236 0.764 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.238 0.762 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.891 -6.576 14.641 20.586 hybrid contribution 1.098 -1.298 -0.843 1.898 sum -11.794 -7.875 13.797 19.785 Atomic orbital electron populations 1.21555 0.79166 1.02273 1.02597 1.45690 1.07906 1.08580 1.76531 1.18280 0.87197 0.83731 0.75981 1.90803 1.69851 1.31089 1.48985 1.19782 0.92647 0.94336 1.08605 1.21401 0.94738 0.96666 0.95861 1.21048 0.93762 0.98531 1.01638 1.21657 1.00696 0.91688 0.93180 1.20052 0.93943 0.93810 1.05688 1.18065 0.82552 0.88422 0.76722 1.90776 1.68804 1.31336 1.49650 1.45876 1.05502 1.10253 1.73738 1.21414 0.93571 0.85822 0.96033 0.88926 1.20973 0.92290 0.97074 0.88106 1.42351 1.06930 1.74638 1.13695 1.19159 0.87037 1.34232 0.97064 0.91223 1.24746 0.96490 1.01844 0.97645 1.69654 1.20534 1.49161 1.18427 0.86281 0.82252 0.78062 0.79620 1.21296 1.21713 1.21269 1.22022 0.97336 1.01048 0.95673 1.21146 0.96480 0.99701 0.93839 1.21867 1.01026 1.00775 0.96655 1.21835 0.99107 0.96337 1.02285 1.21360 0.92510 0.98361 0.89872 0.92070 0.91993 0.90555 0.76409 0.85510 0.84627 0.84663 0.76243 0.94855 0.95860 0.77959 0.93428 0.91983 0.91078 0.90710 0.93129 0.93233 0.93378 0.90495 0.93787 0.94304 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.73 -6.03 5.66 -68.04 -0.39 -6.42 16 3 C 0.56 6.98 7.77 -12.32 -0.10 6.88 16 4 O -0.53 -8.73 16.34 5.32 0.09 -8.64 16 5 C -0.15 -1.81 5.87 -105.01 -0.62 -2.42 16 6 C -0.07 -0.61 9.54 -39.10 -0.37 -0.98 16 7 C -0.13 -1.24 10.02 -39.70 -0.40 -1.64 16 8 C -0.05 -0.62 9.54 -39.10 -0.37 -1.00 16 9 C -0.13 -1.87 5.87 -105.02 -0.62 -2.48 16 10 C 0.56 9.00 6.32 -12.32 -0.08 8.92 16 11 O -0.53 -9.69 11.30 5.32 0.06 -9.63 16 12 N -0.70 -10.85 4.42 -54.74 -0.24 -11.09 16 13 C 0.14 2.21 2.33 -67.93 -0.16 2.05 16 14 H 0.09 1.71 5.92 -51.93 -0.31 1.41 16 15 C 0.14 2.71 5.82 -4.04 -0.02 2.69 16 16 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16 17 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.12 -1.66 4.36 -26.73 -0.12 -1.77 16 26 C -0.09 -1.29 2.38 -90.61 -0.22 -1.50 16 27 C -0.15 -1.72 9.19 37.16 0.34 -1.37 16 28 C -0.14 -2.04 8.03 37.16 0.30 -1.75 16 29 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.40 2.02 6.85 -40.82 -0.28 1.74 16 34 H 0.13 0.65 6.39 -52.48 -0.34 0.32 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 1.44 6.39 -52.49 -0.34 1.11 16 37 H 0.40 5.80 6.63 -40.82 -0.27 5.53 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.39 10.01 7.33 -40.82 -0.30 9.71 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.16 5.19 -51.93 -0.27 0.89 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 1.31 4.75 -51.93 -0.25 1.06 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.15 2.39 7.23 -52.49 -0.38 2.01 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -34.16 408.05 -9.10 -43.26 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -7.77 Total: 14.89 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.38 Total: -0.65 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.23 Total: -62.30 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.15 Total: -18.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.16 -9.10 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482402178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.015 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds