Wall clock time and date at job start Wed Apr 1 2020 04:39:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34779 * 119.99873 * 2 1
4 4 O 1.21549 * 120.00238 * 359.97438 * 3 2 1
5 5 C 1.47865 * 120.00138 * 179.97438 * 3 2 1
6 6 C 1.39712 * 120.07162 * 0.02562 * 5 3 2
7 7 C 1.38058 * 120.14228 * 180.02562 * 6 5 3
8 8 C 1.38097 * 120.29817 * 359.94704 * 7 6 5
9 9 C 1.39661 * 120.14423 * 0.02776 * 8 7 6
10 10 C 1.47866 * 120.07510 * 180.02562 * 9 8 7
11 11 O 1.21553 * 120.00208 * 179.97438 * 10 9 8
12 12 N 1.34775 * 119.99519 * 0.02562 * 10 9 8
13 13 C 1.46506 * 119.99693 * 180.02562 * 12 10 9
14 14 H 1.09004 * 109.47073 * 324.99560 * 13 12 10
15 15 C 1.53002 * 109.47035 * 204.99878 * 13 12 10
16 16 N 1.46499 * 109.47138 * 54.99480 * 15 13 12
17 17 C 1.36941 * 119.99763 * 179.97438 * 16 15 13
18 18 H 1.07996 * 120.00323 * 0.02562 * 17 16 15
19 19 C 1.38818 * 119.99491 * 180.02562 * 17 16 15
20 20 N 1.31608 * 120.00381 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 119.99517 * 180.02562 * 19 17 16
22 22 H 1.48496 * 109.47225 * 59.99642 * 21 19 17
23 23 H 1.48501 * 109.46766 * 180.02562 * 21 19 17
24 24 H 1.48508 * 109.46939 * 299.99783 * 21 19 17
25 25 C 1.52997 * 109.47289 * 84.99802 * 13 12 10
26 26 C 1.53001 * 109.46729 * 294.99928 * 25 13 12
27 27 C 1.53008 * 109.46897 * 175.00328 * 26 25 13
28 28 C 1.53002 * 109.47410 * 294.99729 * 26 25 13
29 29 C 1.39294 * 120.07414 * 180.27453 * 5 3 2
30 30 H 1.08997 * 109.46952 * 300.00229 * 1 2 3
31 31 H 1.09001 * 109.47184 * 60.00243 * 1 2 3
32 32 H 1.09003 * 109.46545 * 180.02562 * 1 2 3
33 33 H 0.97000 * 120.00146 * 179.97438 * 2 1 3
34 34 H 1.08003 * 119.92680 * 0.02562 * 6 5 3
35 35 H 1.08004 * 119.84625 * 179.97438 * 7 6 5
36 36 H 1.07993 * 119.92693 * 180.02562 * 8 7 6
37 37 H 0.97000 * 120.00190 * 359.97438 * 12 10 9
38 38 H 1.09000 * 109.47089 * 174.99822 * 15 13 12
39 39 H 1.09000 * 109.47173 * 294.99899 * 15 13 12
40 40 H 0.97006 * 120.00082 * 0.02562 * 16 15 13
41 41 H 0.97003 * 120.00244 * 179.97438 * 20 19 17
42 42 H 1.08998 * 109.47192 * 54.99783 * 25 13 12
43 43 H 1.09000 * 109.46875 * 175.00185 * 25 13 12
44 44 H 1.08995 * 109.47488 * 55.00460 * 26 25 13
45 45 H 1.08997 * 109.47398 * 59.99527 * 27 26 25
46 46 H 1.08998 * 109.47102 * 179.97438 * 27 26 25
47 47 H 1.09003 * 109.46586 * 299.99701 * 27 26 25
48 48 H 1.09001 * 109.46825 * 60.00283 * 28 26 25
49 49 H 1.08998 * 109.47316 * 180.02562 * 28 26 25
50 50 H 1.08997 * 109.46944 * 300.00508 * 28 26 25
51 51 H 1.07998 * 120.14366 * 359.97438 * 29 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5311 2.2199 -0.0005
5 6 3.6175 1.1673 0.0006
6 6 4.3176 -0.0417 0.0006
7 6 5.6982 -0.0434 0.0016
8 6 6.3963 1.1481 0.0016
9 6 5.7088 2.3638 0.0011
10 6 6.4579 3.6387 0.0005
11 8 5.8581 4.6960 -0.0004
12 7 7.8056 3.6284 -0.0001
13 6 8.5478 4.8915 -0.0001
14 1 8.0058 5.6314 -0.5892
15 6 9.9331 4.6690 -0.6103
16 7 9.7905 4.0752 -1.9419
17 6 10.9035 3.7852 -2.6851
18 1 11.8865 3.9939 -2.2893
19 6 10.7683 3.2229 -3.9471
20 7 9.5705 2.9691 -4.4295
21 14 12.2867 2.8267 -4.9605
22 1 13.1340 1.8549 -4.2236
23 1 11.8746 2.2389 -6.2604
24 1 13.0586 4.0720 -5.2033
25 6 8.6983 5.3947 1.4369
26 6 7.3191 5.7355 2.0049
27 6 7.4557 6.1195 3.4797
28 6 6.7224 6.9092 1.2256
29 6 4.3155 2.3727 0.0063
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3632 -1.0277 0.0005
33 1 1.9500 -0.8400 0.0004
34 1 3.7776 -0.9771 -0.0003
35 1 6.2346 -0.9808 0.0021
36 1 7.4762 1.1399 0.0020
37 1 8.2841 2.7846 0.0003
38 1 10.4517 5.6242 -0.6921
39 1 10.5074 3.9972 0.0275
40 1 8.9075 3.8880 -2.2976
41 1 9.4760 2.5765 -5.3115
42 1 9.1608 4.6188 2.0469
43 1 9.3254 6.2861 1.4459
44 1 6.6645 4.8688 1.9143
45 1 8.1104 6.9862 3.5704
46 1 6.4733 6.3628 3.8843
47 1 7.8808 5.2834 4.0349
48 1 6.6251 6.6357 0.1750
49 1 5.7401 7.1523 1.6306
50 1 7.3771 7.7759 1.3163
51 1 3.7790 3.3100 0.0100
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001482402178.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:31
Heat of formation + Delta-G solvation = -42.249805 kcal
Electronic energy + Delta-G solvation = -30934.322167 eV
Core-core repulsion = 26833.643298 eV
Total energy + Delta-G solvation = -4100.678869 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.60163 -39.80290 -38.19688 -36.54845 -34.96434 -34.94049 -33.54695 -31.97905
-31.19348 -30.84728 -29.05054 -27.18838 -26.85026 -25.56366 -24.30181 -23.36400
-22.69339 -21.35455 -20.72642 -20.01969 -19.66370 -18.66392 -17.21417 -16.67586
-16.36516 -16.26619 -15.75078 -15.60464 -15.44160 -14.77732 -14.56852 -14.36139
-14.11913 -13.88695 -13.83019 -13.53409 -13.44856 -13.25512 -13.01444 -12.89708
-12.65809 -12.44162 -12.13976 -12.08618 -11.97777 -11.91684 -11.48406 -11.45512
-11.03647 -10.97113 -10.81892 -10.51903 -10.24639 -10.24169 -10.22341 -10.01010
-9.73436 -9.53915 -9.50034 -9.14906 -9.14004 -8.93657 -8.59905 -6.98630
-5.79984 -3.10105 0.52666 0.98140 2.50372 2.87057 3.17895 3.40392
3.44111 3.46146 3.46728 3.88255 4.39306 4.52202 4.55447 4.67841
4.86763 4.92138 5.00814 5.04103 5.19179 5.20123 5.21359 5.25570
5.42017 5.49739 5.52001 5.61766 5.66491 5.73207 5.75029 5.90197
5.97577 6.02344 6.05989 6.07670 6.10806 6.13863 6.14271 6.17574
6.21650 6.31877 6.45055 6.50878 6.59774 6.66041 6.70894 6.88079
6.95642 7.15285 7.65416 7.84686 7.94777 8.37500 8.52250 9.49396
10.05256 10.40766 11.41941
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008171 B = 0.003224 C = 0.002487
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3425.823176 B = 8682.414057 C =11257.850219
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.734 5.734
3 C 0.560 3.440
4 O -0.530 6.530
5 C -0.151 4.151
6 C -0.068 4.068
7 C -0.132 4.132
8 C -0.053 4.053
9 C -0.132 4.132
10 C 0.556 3.444
11 O -0.527 6.527
12 N -0.703 5.703
13 C 0.136 3.864
14 H 0.093 0.907
15 C 0.144 3.856
16 N -0.731 5.731
17 C -0.244 4.244
18 H 0.070 0.930
19 C -0.011 4.011
20 N -0.930 5.930
21 Si 0.907 3.093
22 H -0.286 1.286
23 H -0.291 1.291
24 H -0.286 1.286
25 C -0.122 4.122
26 C -0.093 4.093
27 C -0.146 4.146
28 C -0.139 4.139
29 C -0.001 4.001
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.076 0.924
33 H 0.401 0.599
34 H 0.127 0.873
35 H 0.136 0.864
36 H 0.136 0.864
37 H 0.402 0.598
38 H 0.034 0.966
39 H 0.024 0.976
40 H 0.386 0.614
41 H 0.256 0.744
42 H 0.061 0.939
43 H 0.071 0.929
44 H 0.075 0.925
45 H 0.050 0.950
46 H 0.049 0.951
47 H 0.047 0.953
48 H 0.076 0.924
49 H 0.043 0.957
50 H 0.038 0.962
51 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.183 -8.098 14.712 20.747
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.387 5.387
3 C 0.348 3.652
4 O -0.407 6.407
5 C -0.154 4.154
6 C -0.087 4.087
7 C -0.150 4.150
8 C -0.072 4.072
9 C -0.135 4.135
10 C 0.342 3.658
11 O -0.406 6.406
12 N -0.354 5.354
13 C 0.032 3.968
14 H 0.111 0.889
15 C 0.016 3.984
16 N -0.376 5.376
17 C -0.375 4.375
18 H 0.088 0.912
19 C -0.207 4.207
20 N -0.578 5.578
21 Si 0.738 3.262
22 H -0.213 1.213
23 H -0.217 1.217
24 H -0.213 1.213
25 C -0.161 4.161
26 C -0.112 4.112
27 C -0.203 4.203
28 C -0.196 4.196
29 C -0.021 4.021
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.094 0.906
33 H 0.236 0.764
34 H 0.145 0.855
35 H 0.154 0.846
36 H 0.153 0.847
37 H 0.238 0.762
38 H 0.051 0.949
39 H 0.041 0.959
40 H 0.220 0.780
41 H 0.066 0.934
42 H 0.080 0.920
43 H 0.089 0.911
44 H 0.093 0.907
45 H 0.069 0.931
46 H 0.068 0.932
47 H 0.066 0.934
48 H 0.095 0.905
49 H 0.062 0.938
50 H 0.057 0.943
51 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -12.891 -6.576 14.641 20.586
hybrid contribution 1.098 -1.298 -0.843 1.898
sum -11.794 -7.875 13.797 19.785
Atomic orbital electron populations
1.21555 0.79166 1.02273 1.02597 1.45690 1.07906 1.08580 1.76531
1.18280 0.87197 0.83731 0.75981 1.90803 1.69851 1.31089 1.48985
1.19782 0.92647 0.94336 1.08605 1.21401 0.94738 0.96666 0.95861
1.21048 0.93762 0.98531 1.01638 1.21657 1.00696 0.91688 0.93180
1.20052 0.93943 0.93810 1.05688 1.18065 0.82552 0.88422 0.76722
1.90776 1.68804 1.31336 1.49650 1.45876 1.05502 1.10253 1.73738
1.21414 0.93571 0.85822 0.96033 0.88926 1.20973 0.92290 0.97074
0.88106 1.42351 1.06930 1.74638 1.13695 1.19159 0.87037 1.34232
0.97064 0.91223 1.24746 0.96490 1.01844 0.97645 1.69654 1.20534
1.49161 1.18427 0.86281 0.82252 0.78062 0.79620 1.21296 1.21713
1.21269 1.22022 0.97336 1.01048 0.95673 1.21146 0.96480 0.99701
0.93839 1.21867 1.01026 1.00775 0.96655 1.21835 0.99107 0.96337
1.02285 1.21360 0.92510 0.98361 0.89872 0.92070 0.91993 0.90555
0.76409 0.85510 0.84627 0.84663 0.76243 0.94855 0.95860 0.77959
0.93428 0.91983 0.91078 0.90710 0.93129 0.93233 0.93378 0.90495
0.93787 0.94304 0.83319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.59 10.70 59.85 0.64 1.23 16
2 N -0.73 -6.03 5.66 -68.04 -0.39 -6.42 16
3 C 0.56 6.98 7.77 -12.32 -0.10 6.88 16
4 O -0.53 -8.73 16.34 5.32 0.09 -8.64 16
5 C -0.15 -1.81 5.87 -105.01 -0.62 -2.42 16
6 C -0.07 -0.61 9.54 -39.10 -0.37 -0.98 16
7 C -0.13 -1.24 10.02 -39.70 -0.40 -1.64 16
8 C -0.05 -0.62 9.54 -39.10 -0.37 -1.00 16
9 C -0.13 -1.87 5.87 -105.02 -0.62 -2.48 16
10 C 0.56 9.00 6.32 -12.32 -0.08 8.92 16
11 O -0.53 -9.69 11.30 5.32 0.06 -9.63 16
12 N -0.70 -10.85 4.42 -54.74 -0.24 -11.09 16
13 C 0.14 2.21 2.33 -67.93 -0.16 2.05 16
14 H 0.09 1.71 5.92 -51.93 -0.31 1.41 16
15 C 0.14 2.71 5.82 -4.04 -0.02 2.69 16
16 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16
17 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16
18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
20 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16
21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16
22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
25 C -0.12 -1.66 4.36 -26.73 -0.12 -1.77 16
26 C -0.09 -1.29 2.38 -90.61 -0.22 -1.50 16
27 C -0.15 -1.72 9.19 37.16 0.34 -1.37 16
28 C -0.14 -2.04 8.03 37.16 0.30 -1.75 16
29 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16
30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16
33 H 0.40 2.02 6.85 -40.82 -0.28 1.74 16
34 H 0.13 0.65 6.39 -52.48 -0.34 0.32 16
35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16
36 H 0.14 1.44 6.39 -52.49 -0.34 1.11 16
37 H 0.40 5.80 6.63 -40.82 -0.27 5.53 16
38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
40 H 0.39 10.01 7.33 -40.82 -0.30 9.71 16
41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
44 H 0.07 1.16 5.19 -51.93 -0.27 0.89 16
45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
48 H 0.08 1.31 4.75 -51.93 -0.25 1.06 16
49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
50 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16
51 H 0.15 2.39 7.23 -52.49 -0.38 2.01 16
LS Contribution 408.05 15.07 6.15 6.15
Total: -1.00 -34.16 408.05 -9.10 -43.26
By element:
Atomic # 1 Polarization: 22.65 SS G_CDS: -7.77 Total: 14.89 kcal
Atomic # 6 Polarization: 1.73 SS G_CDS: -2.38 Total: -0.65 kcal
Atomic # 7 Polarization: -62.07 SS G_CDS: -0.23 Total: -62.30 kcal
Atomic # 8 Polarization: -18.41 SS G_CDS: 0.15 Total: -18.26 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -34.16 -9.10 -43.26 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482402178.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.015 kcal
(2) G-P(sol) polarization free energy of solvation -34.160 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds