Wall clock time and date at job start Wed Apr 1 2020 04:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99873 * 2 1 4 4 O 1.21549 * 120.00238 * 359.97438 * 3 2 1 5 5 C 1.47865 * 120.00138 * 179.97438 * 3 2 1 6 6 C 1.39712 * 120.07162 * 0.02562 * 5 3 2 7 7 C 1.38058 * 120.14228 * 180.02562 * 6 5 3 8 8 C 1.38097 * 120.29817 * 359.94704 * 7 6 5 9 9 C 1.39661 * 120.14423 * 0.02776 * 8 7 6 10 10 C 1.47866 * 120.07510 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00208 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99519 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99693 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47073 * 324.99560 * 13 12 10 15 15 C 1.53002 * 109.47035 * 204.99878 * 13 12 10 16 16 N 1.46499 * 109.47138 * 54.99480 * 15 13 12 17 17 C 1.36941 * 119.99763 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00323 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99491 * 180.02562 * 17 16 15 20 20 N 1.31608 * 120.00381 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99517 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47225 * 59.99642 * 21 19 17 23 23 H 1.48501 * 109.46766 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46939 * 299.99783 * 21 19 17 25 25 C 1.52997 * 109.47289 * 84.99802 * 13 12 10 26 26 C 1.53001 * 109.46729 * 294.99928 * 25 13 12 27 27 C 1.53008 * 109.46897 * 175.00328 * 26 25 13 28 28 C 1.53002 * 109.47410 * 294.99729 * 26 25 13 29 29 C 1.39294 * 120.07414 * 180.27453 * 5 3 2 30 30 H 1.08997 * 109.46952 * 300.00229 * 1 2 3 31 31 H 1.09001 * 109.47184 * 60.00243 * 1 2 3 32 32 H 1.09003 * 109.46545 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00146 * 179.97438 * 2 1 3 34 34 H 1.08003 * 119.92680 * 0.02562 * 6 5 3 35 35 H 1.08004 * 119.84625 * 179.97438 * 7 6 5 36 36 H 1.07993 * 119.92693 * 180.02562 * 8 7 6 37 37 H 0.97000 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.47089 * 174.99822 * 15 13 12 39 39 H 1.09000 * 109.47173 * 294.99899 * 15 13 12 40 40 H 0.97006 * 120.00082 * 0.02562 * 16 15 13 41 41 H 0.97003 * 120.00244 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47192 * 54.99783 * 25 13 12 43 43 H 1.09000 * 109.46875 * 175.00185 * 25 13 12 44 44 H 1.08995 * 109.47488 * 55.00460 * 26 25 13 45 45 H 1.08997 * 109.47398 * 59.99527 * 27 26 25 46 46 H 1.08998 * 109.47102 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.46586 * 299.99701 * 27 26 25 48 48 H 1.09001 * 109.46825 * 60.00283 * 28 26 25 49 49 H 1.08998 * 109.47316 * 180.02562 * 28 26 25 50 50 H 1.08997 * 109.46944 * 300.00508 * 28 26 25 51 51 H 1.07998 * 120.14366 * 359.97438 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3176 -0.0417 0.0006 7 6 5.6982 -0.0434 0.0016 8 6 6.3963 1.1481 0.0016 9 6 5.7088 2.3638 0.0011 10 6 6.4579 3.6387 0.0005 11 8 5.8581 4.6960 -0.0004 12 7 7.8056 3.6284 -0.0001 13 6 8.5478 4.8915 -0.0001 14 1 8.0058 5.6314 -0.5892 15 6 9.9331 4.6690 -0.6103 16 7 9.7905 4.0752 -1.9419 17 6 10.9035 3.7852 -2.6851 18 1 11.8865 3.9939 -2.2893 19 6 10.7683 3.2229 -3.9471 20 7 9.5705 2.9691 -4.4295 21 14 12.2867 2.8267 -4.9605 22 1 13.1340 1.8549 -4.2236 23 1 11.8746 2.2389 -6.2604 24 1 13.0586 4.0720 -5.2033 25 6 8.6983 5.3947 1.4369 26 6 7.3191 5.7355 2.0049 27 6 7.4557 6.1195 3.4797 28 6 6.7224 6.9092 1.2256 29 6 4.3155 2.3727 0.0063 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7776 -0.9771 -0.0003 35 1 6.2346 -0.9808 0.0021 36 1 7.4762 1.1399 0.0020 37 1 8.2841 2.7846 0.0003 38 1 10.4517 5.6242 -0.6921 39 1 10.5074 3.9972 0.0275 40 1 8.9075 3.8880 -2.2976 41 1 9.4760 2.5765 -5.3115 42 1 9.1608 4.6188 2.0469 43 1 9.3254 6.2861 1.4459 44 1 6.6645 4.8688 1.9143 45 1 8.1104 6.9862 3.5704 46 1 6.4733 6.3628 3.8843 47 1 7.8808 5.2834 4.0349 48 1 6.6251 6.6357 0.1750 49 1 5.7401 7.1523 1.6306 50 1 7.3771 7.7759 1.3163 51 1 3.7790 3.3100 0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482402178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:30 Heat of formation + Delta-G solvation = -66.176834 kcal Electronic energy + Delta-G solvation = -30935.359721 eV Core-core repulsion = 26833.643298 eV Total energy + Delta-G solvation = -4101.716423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66618 -40.90694 -39.20146 -37.85736 -36.44589 -35.80716 -35.10513 -33.33188 -32.34356 -32.10352 -30.45791 -27.97033 -27.90901 -27.17551 -25.36994 -24.63230 -24.10160 -22.41215 -21.97093 -21.13169 -20.82014 -19.72523 -19.08565 -17.78295 -17.42205 -17.22014 -16.92472 -16.80892 -16.47848 -16.32771 -15.63328 -15.57582 -15.33260 -15.19248 -14.97575 -14.79464 -14.61389 -14.51079 -14.34179 -14.08944 -13.69697 -13.33789 -13.25790 -13.18421 -13.01809 -12.96584 -12.89719 -12.74370 -12.56612 -12.42147 -12.32799 -12.12872 -11.87178 -11.64429 -11.40187 -11.26229 -11.23259 -10.95416 -10.79011 -10.36914 -10.12387 -10.00357 -9.84909 -8.99195 -7.91736 -5.21524 -0.38775 -0.00324 1.49459 1.52073 1.54452 1.58050 2.03224 2.08909 2.29351 2.57763 2.87018 3.42037 3.57961 3.60201 3.72575 3.82256 3.99329 4.03302 4.08435 4.10442 4.24879 4.34247 4.36989 4.41092 4.44616 4.61042 4.63071 4.66768 4.80731 4.87461 4.87945 4.89544 4.92629 4.94610 4.99486 5.09185 5.13320 5.15688 5.21407 5.23111 5.27757 5.32646 5.39171 5.52730 5.56510 5.61187 5.66408 5.73380 6.28059 6.44444 6.60534 7.11886 7.27963 7.35758 8.09297 8.33341 9.30732 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008171 B = 0.003224 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.823176 B = 8682.414057 C =11257.850219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.713 5.713 3 C 0.554 3.446 4 O -0.584 6.584 5 C -0.159 4.159 6 C -0.046 4.046 7 C -0.122 4.122 8 C -0.057 4.057 9 C -0.153 4.153 10 C 0.550 3.450 11 O -0.559 6.559 12 N -0.698 5.698 13 C 0.145 3.855 14 H 0.064 0.936 15 C 0.145 3.855 16 N -0.742 5.742 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.299 1.299 24 H -0.283 1.283 25 C -0.112 4.112 26 C -0.091 4.091 27 C -0.140 4.140 28 C -0.134 4.134 29 C -0.025 4.025 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.120 0.880 33 H 0.420 0.580 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.144 0.856 37 H 0.407 0.593 38 H 0.036 0.964 39 H 0.042 0.958 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.047 0.953 49 H 0.037 0.963 50 H 0.052 0.948 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 -11.131 16.171 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.342 3.658 4 O -0.466 6.466 5 C -0.162 4.162 6 C -0.064 4.064 7 C -0.140 4.140 8 C -0.076 4.076 9 C -0.156 4.156 10 C 0.338 3.662 11 O -0.440 6.440 12 N -0.349 5.349 13 C 0.041 3.959 14 H 0.082 0.918 15 C 0.019 3.981 16 N -0.386 5.386 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.801 3.199 22 H -0.199 1.199 23 H -0.226 1.226 24 H -0.209 1.209 25 C -0.151 4.151 26 C -0.109 4.109 27 C -0.197 4.197 28 C -0.191 4.191 29 C -0.045 4.045 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.258 0.742 34 H 0.194 0.806 35 H 0.193 0.807 36 H 0.162 0.838 37 H 0.244 0.756 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.071 0.929 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.540 -9.657 16.147 22.072 hybrid contribution 0.630 -0.384 -1.256 1.457 sum -10.911 -10.040 14.891 21.014 Atomic orbital electron populations 1.21752 0.78030 1.04761 1.01560 1.45584 1.08668 1.08020 1.74274 1.18480 0.87481 0.84169 0.75651 1.90777 1.70766 1.33222 1.51792 1.19859 0.92644 0.94697 1.09038 1.21886 0.94844 0.97041 0.92641 1.21524 0.94014 0.98968 0.99449 1.21866 1.01287 0.91588 0.92855 1.19906 0.93700 0.93840 1.08127 1.18475 0.82692 0.89028 0.75974 1.90757 1.69376 1.32721 1.51119 1.45787 1.05339 1.10179 1.73568 1.21222 0.91751 0.85664 0.97297 0.91810 1.21117 0.93994 0.96947 0.86092 1.42526 1.05713 1.74903 1.15416 1.19581 0.88086 1.32597 0.97228 0.90326 1.25530 0.99075 1.02815 0.99065 1.69825 1.22598 1.50864 1.18460 0.85243 0.79074 0.77919 0.77661 1.19933 1.22583 1.20905 1.21953 0.97470 1.01961 0.93699 1.21076 0.96060 0.98429 0.95346 1.21803 1.01475 1.01715 0.94722 1.21766 0.99325 0.97377 1.00653 1.21182 0.92820 0.98349 0.92161 0.92969 0.93308 0.86207 0.74155 0.80636 0.80658 0.83794 0.75585 0.94630 0.93969 0.79412 0.94187 0.90225 0.89856 0.92695 0.91925 0.93270 0.92152 0.93372 0.94352 0.92909 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.34 16 2 N -0.71 -10.27 5.66 -487.45 -2.76 -13.04 16 3 C 0.55 13.91 7.77 86.79 0.67 14.59 16 4 O -0.58 -20.58 16.34 -3.87 -0.06 -20.65 16 5 C -0.16 -3.80 5.87 -20.12 -0.12 -3.92 16 6 C -0.05 -0.67 9.54 22.58 0.22 -0.45 16 7 C -0.12 -1.88 10.02 22.19 0.22 -1.66 16 8 C -0.06 -1.28 9.54 22.58 0.22 -1.06 16 9 C -0.15 -4.54 5.87 -20.12 -0.12 -4.66 16 10 C 0.55 19.08 6.32 86.79 0.55 19.63 16 11 O -0.56 -22.57 11.30 -3.88 -0.04 -22.62 16 12 N -0.70 -22.21 4.42 -445.37 -1.97 -24.18 16 13 C 0.15 4.80 2.33 44.99 0.10 4.91 16 14 H 0.06 2.51 5.92 -2.38 -0.01 2.49 16 15 C 0.15 5.40 5.82 86.38 0.50 5.91 16 16 N -0.74 -36.07 5.43 -343.44 -1.87 -37.93 16 17 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.04 5.50 84.87 0.47 -3.58 16 20 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 21 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 C -0.11 -2.95 4.36 30.59 0.13 -2.82 16 26 C -0.09 -2.52 2.38 -10.79 -0.03 -2.55 16 27 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 28 C -0.13 -4.13 8.03 71.98 0.58 -3.56 16 29 C -0.02 -0.78 9.14 22.79 0.21 -0.57 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.42 2.56 6.85 -92.71 -0.64 1.93 16 34 H 0.18 0.80 6.39 -2.91 -0.02 0.78 16 35 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.14 2.89 6.39 -2.91 -0.02 2.87 16 37 H 0.41 11.81 6.63 -92.71 -0.61 11.20 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.37 19.91 7.33 -92.70 -0.68 19.23 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.05 1.77 5.19 -2.39 -0.01 1.76 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.77 4.75 -2.39 -0.01 1.76 16 49 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.11 4.24 7.23 -2.91 -0.02 4.22 16 Total: -1.00 -79.39 408.05 1.13 -78.26 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -0.96 Total: 43.15 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.48 Total: 7.94 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -6.31 Total: -133.08 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.11 Total: -43.26 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.39 1.13 -78.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482402178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.079 kcal (2) G-P(sol) polarization free energy of solvation -79.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds