Wall clock time and date at job start Wed Apr 1 2020 04:36:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53010 * 109.46825 * 2 1
4 4 C 1.47193 * 109.47107 * 120.00053 * 2 1 3
5 5 C 2.64600 * 109.47135 * 119.99924 * 2 1 3
6 6 C 4.07795 * 109.47097 * 119.99924 * 2 1 3
7 7 O 1.21613 * 119.99900 * 72.96864 * 6 5 4
8 8 N 1.34773 * 120.00182 * 252.97136 * 6 5 4
9 9 C 1.46499 * 120.00029 * 180.02562 * 8 6 5
10 10 H 1.08994 * 109.32216 * 325.35049 * 9 8 6
11 11 C 1.53028 * 109.33097 * 84.99765 * 9 8 6
12 12 C 1.53959 * 108.84560 * 175.70770 * 11 9 8
13 13 H 1.09002 * 112.96781 * 169.10746 * 12 11 9
14 14 C 1.55407 * 106.42972 * 293.87935 * 12 11 9
15 15 C 1.55168 * 100.42772 * 73.29041 * 14 12 11
16 16 H 1.09002 * 112.49957 * 162.70198 * 15 14 12
17 17 C 1.52988 * 109.32132 * 205.88708 * 9 8 6
18 18 N 1.48211 * 104.21994 * 40.59006 * 15 14 12
19 19 C 1.46903 * 111.00438 * 211.59385 * 18 15 14
20 20 C 1.50695 * 109.47430 * 162.24348 * 19 18 15
21 21 O 1.21291 * 119.99814 * 0.02562 * 20 19 18
22 22 N 1.34774 * 119.99842 * 179.97438 * 20 19 18
23 23 C 1.37098 * 119.99761 * 179.97438 * 22 20 19
24 24 H 1.08001 * 120.00046 * 0.02562 * 23 22 20
25 25 C 1.38954 * 120.00105 * 180.02562 * 23 22 20
26 26 N 1.31409 * 120.00178 * 180.02562 * 25 23 22
27 27 Si 1.86806 * 119.99580 * 359.97438 * 25 23 22
28 28 H 1.48498 * 109.46992 * 270.00072 * 27 25 23
29 29 H 1.48498 * 109.47320 * 30.00411 * 27 25 23
30 30 H 1.48499 * 109.46666 * 150.00431 * 27 25 23
31 31 C 1.47509 * 108.15640 * 333.58900 * 18 15 14
32 32 H 1.08996 * 109.47290 * 299.99828 * 1 2 3
33 33 H 1.09000 * 109.46889 * 60.00089 * 1 2 3
34 34 H 1.09002 * 109.46755 * 179.97438 * 1 2 3
35 35 H 1.08996 * 109.47290 * 240.00172 * 2 1 3
36 36 H 1.09000 * 109.46585 * 60.00127 * 3 2 1
37 37 H 1.08995 * 109.46744 * 179.97438 * 3 2 1
38 38 H 1.08993 * 109.47069 * 299.99942 * 3 2 1
39 39 H 0.97004 * 119.99737 * 359.97438 * 8 6 5
40 40 H 1.08997 * 109.57331 * 55.89701 * 11 9 8
41 41 H 1.09000 * 109.67633 * 295.57903 * 11 9 8
42 42 H 1.08998 * 111.22419 * 315.49757 * 14 12 11
43 43 H 1.09002 * 111.26183 * 191.10028 * 14 12 11
44 44 H 1.09002 * 109.53814 * 64.71052 * 17 9 8
45 45 H 1.08999 * 109.53747 * 304.46786 * 17 9 8
46 46 H 1.09000 * 109.46454 * 42.24171 * 19 18 15
47 47 H 1.09004 * 109.46969 * 282.24953 * 19 18 15
48 48 H 0.96997 * 120.00294 * 0.02562 * 22 20 19
49 49 H 0.97000 * 120.00191 * 179.97438 * 26 25 23
50 50 H 1.08994 * 109.98387 * 120.37206 * 31 18 15
51 51 H 1.08999 * 109.98389 * 241.67726 * 31 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0207 -0.6939 1.2018
5 6 2.4120 -1.2473 2.1605
6 6 2.8893 -1.9223 3.3297
7 8 3.3148 -3.0584 3.2448
8 7 2.8670 -1.2987 4.5242
9 6 3.3558 -1.9891 5.7203
10 1 3.1182 -3.0503 5.6465
11 6 4.8729 -1.8156 5.8208
12 6 5.3601 -2.4517 7.1355
13 1 6.4455 -2.5358 7.1906
14 6 4.7538 -1.6014 8.2864
15 6 3.2708 -2.0527 8.2178
16 1 2.7180 -1.8084 9.1249
17 6 2.6706 -1.4053 6.9573
18 7 3.3455 -3.5131 7.9762
19 6 2.2025 -3.9737 7.1765
20 6 2.5142 -5.3248 6.5864
21 8 3.5831 -5.8525 6.8104
22 7 1.6048 -5.9473 5.8106
23 6 1.8885 -7.1763 5.2733
24 1 2.8406 -7.6458 5.4721
25 6 0.9511 -7.8180 4.4731
26 7 1.2229 -8.9962 3.9585
27 14 -0.6960 -7.0062 4.1299
28 1 -1.6741 -7.4116 5.1710
29 1 -0.5342 -5.5302 4.1505
30 1 -1.1888 -7.4316 2.7952
31 6 4.6199 -3.8011 7.2915
32 1 -0.3634 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 -0.3633 -1.0277 -0.0005
35 1 1.8934 -0.5138 -0.8900
36 1 1.6766 1.9563 0.8900
37 1 3.1299 1.4426 0.0005
38 1 1.6767 1.9564 -0.8899
39 1 2.5279 -0.3923 4.5918
40 1 5.1202 -0.7541 5.8150
41 1 5.3553 -2.3076 4.9763
42 1 4.8514 -0.5350 8.0828
43 1 5.2008 -1.8596 9.2464
44 1 1.6015 -1.6138 6.9144
45 1 2.8320 -0.3278 6.9890
46 1 2.0107 -3.2620 6.3735
47 1 1.3209 -4.0497 7.8129
48 1 0.7498 -5.5255 5.6318
49 1 0.5684 -9.4443 3.4001
50 1 5.2182 -4.4870 7.8912
51 1 4.4261 -4.2353 6.3107
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484319840.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:26
Heat of formation + Delta-G solvation = 27.580319 kcal
Electronic energy + Delta-G solvation = -31997.495021 eV
Core-core repulsion = 27899.844214 eV
Total energy + Delta-G solvation = -4097.650808 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.67436 -39.31728 -37.99246 -36.69680 -34.95906 -33.99832 -32.88115 -32.28489
-31.58140 -30.77565 -29.81706 -27.62359 -26.73798 -24.84687 -24.56654 -23.79100
-22.43487 -21.36861 -20.23448 -19.93602 -19.23743 -18.53125 -18.00041 -17.07783
-16.33952 -15.89410 -15.66780 -15.26577 -15.00949 -14.77639 -14.71329 -14.66821
-13.94568 -13.84633 -13.55809 -13.35009 -13.18609 -12.85693 -12.72027 -12.67201
-12.47051 -12.40874 -12.32422 -12.16942 -11.87767 -11.84899 -11.80158 -11.60006
-11.23868 -11.10399 -10.87549 -10.73646 -10.53754 -10.52673 -10.43596 -10.36096
-10.12745 -10.03818 -9.89868 -9.42400 -9.10790 -8.25113 -8.05226 -7.85679
-6.23486 -3.73275 1.50406 2.15885 2.93839 3.09613 3.11795 3.19612
3.48066 3.77855 3.93355 4.11014 4.17887 4.46856 4.51476 4.53865
4.69499 4.75152 4.77052 4.88103 5.02761 5.11758 5.13231 5.15243
5.17700 5.29447 5.30907 5.35709 5.43599 5.45095 5.48079 5.49928
5.58356 5.69532 5.75198 5.80108 5.84411 5.88958 5.96017 5.97189
6.07851 6.11859 6.13413 6.20354 6.35808 6.55810 6.78983 7.08448
7.31374 7.31811 7.34439 7.65539 8.11562 8.22168 8.66435 9.02274
9.50065 9.88332 10.89754
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.006610 B = 0.004701 C = 0.003018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4234.935010 B = 5954.916041 C = 9276.755691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.008 3.992
3 C -0.145 4.145
4 C -0.081 4.081
5 C -0.217 4.217
6 C 0.623 3.377
7 O -0.498 6.498
8 N -0.717 5.717
9 C 0.113 3.887
10 H 0.122 0.878
11 C -0.123 4.123
12 C -0.119 4.119
13 H 0.093 0.907
14 C -0.121 4.121
15 C 0.075 3.925
16 H 0.104 0.896
17 C -0.156 4.156
18 N -0.503 5.503
19 C 0.003 3.997
20 C 0.446 3.554
21 O -0.561 6.561
22 N -0.584 5.584
23 C -0.299 4.299
24 H 0.121 0.879
25 C 0.043 3.957
26 N -0.881 5.881
27 Si 0.876 3.124
28 H -0.270 1.270
29 H -0.271 1.271
30 H -0.276 1.276
31 C 0.054 3.946
32 H 0.061 0.939
33 H 0.070 0.930
34 H 0.063 0.937
35 H 0.101 0.899
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.069 0.931
39 H 0.399 0.601
40 H 0.061 0.939
41 H 0.070 0.930
42 H 0.071 0.929
43 H 0.075 0.925
44 H 0.075 0.925
45 H 0.074 0.926
46 H 0.078 0.922
47 H 0.089 0.911
48 H 0.369 0.631
49 H 0.272 0.728
50 H 0.080 0.920
51 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.794 26.430 -1.288 26.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.010 4.010
3 C -0.202 4.202
4 C -0.084 4.084
5 C -0.220 4.220
6 C 0.409 3.591
7 O -0.372 6.372
8 N -0.368 5.368
9 C 0.010 3.990
10 H 0.140 0.860
11 C -0.162 4.162
12 C -0.139 4.139
13 H 0.111 0.889
14 C -0.159 4.159
15 C -0.034 4.034
16 H 0.122 0.878
17 C -0.196 4.196
18 N -0.227 5.227
19 C -0.128 4.128
20 C 0.232 3.768
21 O -0.444 6.444
22 N -0.222 5.222
23 C -0.428 4.428
24 H 0.138 0.862
25 C -0.160 4.160
26 N -0.521 5.521
27 Si 0.703 3.297
28 H -0.196 1.196
29 H -0.196 1.196
30 H -0.202 1.202
31 C -0.073 4.073
32 H 0.080 0.920
33 H 0.089 0.911
34 H 0.082 0.918
35 H 0.119 0.881
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.088 0.912
39 H 0.233 0.767
40 H 0.080 0.920
41 H 0.089 0.911
42 H 0.090 0.910
43 H 0.094 0.906
44 H 0.093 0.907
45 H 0.092 0.908
46 H 0.095 0.905
47 H 0.107 0.893
48 H 0.201 0.799
49 H 0.083 0.917
50 H 0.099 0.901
51 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 0.138 24.730 -0.853 24.746
hybrid contribution -1.633 1.372 -1.227 2.461
sum -1.495 26.103 -2.081 26.228
Atomic orbital electron populations
1.21845 0.92697 1.03084 1.02754 1.18503 0.96316 0.95134 0.91055
1.21839 1.01700 0.93888 1.02779 1.22590 0.94283 0.96466 0.95035
1.20784 1.03755 1.00472 0.97023 1.14785 0.78598 0.84895 0.80809
1.91012 1.44405 1.16615 1.85169 1.45880 1.65417 1.18414 1.07069
1.21994 0.94093 1.00088 0.82805 0.86039 1.22175 0.94696 1.00606
0.98689 1.22982 1.00280 0.97033 0.93641 0.88869 1.22940 0.94729
0.98958 0.99261 1.23057 0.96616 0.87681 0.96075 0.87802 1.22595
1.00845 1.00999 0.95118 1.63672 1.01879 1.12136 1.45030 1.22733
0.95692 0.96636 0.97742 1.19596 0.85943 0.87604 0.83639 1.90566
1.23990 1.66989 1.62809 1.42175 1.15684 1.19039 1.45303 1.19424
1.04735 0.92238 1.26386 0.86185 1.25004 0.98214 0.95870 0.96862
1.69617 1.35603 1.13790 1.33071 0.86711 0.84491 0.79459 0.79046
1.19588 1.19625 1.20156 1.23205 0.89132 0.93872 1.01096 0.91998
0.91144 0.91772 0.88125 0.92027 0.92012 0.91177 0.76740 0.91990
0.91131 0.91048 0.90582 0.90667 0.90769 0.90508 0.89320 0.79870
0.91699 0.90137 0.89311
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.99 9.15 37.16 0.34 -0.65 16
2 C 0.01 0.06 3.30 -93.40 -0.31 -0.25 16
3 C -0.14 -0.83 9.15 37.16 0.34 -0.49 16
4 C -0.08 -0.95 12.56 -37.13 -0.47 -1.42 16
5 C -0.22 -3.10 13.61 -38.84 -0.53 -3.63 16
6 C 0.62 10.24 7.61 -14.34 -0.11 10.13 16
7 O -0.50 -10.85 16.74 5.27 0.09 -10.76 16
8 N -0.72 -9.04 5.05 -56.24 -0.28 -9.32 16
9 C 0.11 1.56 1.53 -67.92 -0.10 1.45 16
10 H 0.12 2.20 2.63 -51.93 -0.14 2.07 16
11 C -0.12 -1.63 5.06 -26.22 -0.13 -1.76 16
12 C -0.12 -1.58 4.32 -87.95 -0.38 -1.96 16
13 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
14 C -0.12 -1.29 6.17 -24.31 -0.15 -1.44 16
15 C 0.07 0.88 4.37 -65.38 -0.29 0.59 16
16 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16
17 C -0.16 -1.67 4.34 -26.27 -0.11 -1.78 16
18 N -0.50 -8.25 5.30 -223.50 -1.19 -9.44 16
19 C 0.00 0.05 4.66 -4.98 -0.02 0.03 16
20 C 0.45 10.67 6.77 -10.99 -0.07 10.60 16
21 O -0.56 -15.27 12.73 5.55 0.07 -15.19 16
22 N -0.58 -14.85 5.09 -10.96 -0.06 -14.90 16
23 C -0.30 -8.89 10.16 -14.93 -0.15 -9.04 16
24 H 0.12 4.04 7.39 -52.49 -0.39 3.65 16
25 C 0.04 1.25 5.50 -17.47 -0.10 1.15 16
26 N -0.88 -26.78 13.96 55.50 0.77 -26.01 16
27 Si 0.88 20.60 27.74 -169.99 -4.72 15.89 16
28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
29 H -0.27 -5.97 6.52 56.52 0.37 -5.60 16
30 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
31 C 0.05 0.96 4.01 -2.59 -0.01 0.95 16
32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
39 H 0.40 3.61 8.57 -40.82 -0.35 3.26 16
40 H 0.06 0.68 7.98 -51.93 -0.41 0.26 16
41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
42 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16
43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
44 H 0.07 0.79 7.03 -51.93 -0.37 0.42 16
45 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16
46 H 0.08 1.28 3.25 -51.93 -0.17 1.12 16
47 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16
48 H 0.37 8.43 5.76 -40.82 -0.24 8.20 16
49 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16
50 H 0.08 1.56 7.97 -51.93 -0.41 1.14 16
51 H 0.09 1.94 4.32 -51.93 -0.22 1.71 16
LS Contribution 396.26 15.07 5.97 5.97
Total: -1.00 -36.40 396.26 -9.34 -45.75
By element:
Atomic # 1 Polarization: 23.30 SS G_CDS: -7.75 Total: 15.54 kcal
Atomic # 6 Polarization: 4.73 SS G_CDS: -2.25 Total: 2.48 kcal
Atomic # 7 Polarization: -58.92 SS G_CDS: -0.75 Total: -59.67 kcal
Atomic # 8 Polarization: -26.11 SS G_CDS: 0.16 Total: -25.95 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -4.72 Total: 15.89 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -36.40 -9.34 -45.75 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484319840.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.328 kcal
(2) G-P(sol) polarization free energy of solvation -36.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds