Wall clock time and date at job start Wed Apr 1 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46825 * 2 1 4 4 C 1.47193 * 109.47107 * 120.00053 * 2 1 3 5 5 C 2.64600 * 109.47135 * 119.99924 * 2 1 3 6 6 C 4.07795 * 109.47097 * 119.99924 * 2 1 3 7 7 O 1.21613 * 119.99900 * 72.96864 * 6 5 4 8 8 N 1.34773 * 120.00182 * 252.97136 * 6 5 4 9 9 C 1.46499 * 120.00029 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.32216 * 325.35049 * 9 8 6 11 11 C 1.53028 * 109.33097 * 84.99765 * 9 8 6 12 12 C 1.53959 * 108.84560 * 175.70770 * 11 9 8 13 13 H 1.09002 * 112.96781 * 169.10746 * 12 11 9 14 14 C 1.55407 * 106.42972 * 293.87935 * 12 11 9 15 15 C 1.55168 * 100.42772 * 73.29041 * 14 12 11 16 16 H 1.09002 * 112.49957 * 162.70198 * 15 14 12 17 17 C 1.52988 * 109.32132 * 205.88708 * 9 8 6 18 18 N 1.48211 * 104.21994 * 40.59006 * 15 14 12 19 19 C 1.46903 * 111.00438 * 211.59385 * 18 15 14 20 20 C 1.50695 * 109.47430 * 162.24348 * 19 18 15 21 21 O 1.21291 * 119.99814 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99842 * 179.97438 * 20 19 18 23 23 C 1.37098 * 119.99761 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00046 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00105 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00178 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99580 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.46992 * 270.00072 * 27 25 23 29 29 H 1.48498 * 109.47320 * 30.00411 * 27 25 23 30 30 H 1.48499 * 109.46666 * 150.00431 * 27 25 23 31 31 C 1.47509 * 108.15640 * 333.58900 * 18 15 14 32 32 H 1.08996 * 109.47290 * 299.99828 * 1 2 3 33 33 H 1.09000 * 109.46889 * 60.00089 * 1 2 3 34 34 H 1.09002 * 109.46755 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47290 * 240.00172 * 2 1 3 36 36 H 1.09000 * 109.46585 * 60.00127 * 3 2 1 37 37 H 1.08995 * 109.46744 * 179.97438 * 3 2 1 38 38 H 1.08993 * 109.47069 * 299.99942 * 3 2 1 39 39 H 0.97004 * 119.99737 * 359.97438 * 8 6 5 40 40 H 1.08997 * 109.57331 * 55.89701 * 11 9 8 41 41 H 1.09000 * 109.67633 * 295.57903 * 11 9 8 42 42 H 1.08998 * 111.22419 * 315.49757 * 14 12 11 43 43 H 1.09002 * 111.26183 * 191.10028 * 14 12 11 44 44 H 1.09002 * 109.53814 * 64.71052 * 17 9 8 45 45 H 1.08999 * 109.53747 * 304.46786 * 17 9 8 46 46 H 1.09000 * 109.46454 * 42.24171 * 19 18 15 47 47 H 1.09004 * 109.46969 * 282.24953 * 19 18 15 48 48 H 0.96997 * 120.00294 * 0.02562 * 22 20 19 49 49 H 0.97000 * 120.00191 * 179.97438 * 26 25 23 50 50 H 1.08994 * 109.98387 * 120.37206 * 31 18 15 51 51 H 1.08999 * 109.98389 * 241.67726 * 31 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3297 7 8 3.3148 -3.0584 3.2448 8 7 2.8670 -1.2987 4.5242 9 6 3.3558 -1.9891 5.7203 10 1 3.1182 -3.0503 5.6465 11 6 4.8729 -1.8156 5.8208 12 6 5.3601 -2.4517 7.1355 13 1 6.4455 -2.5358 7.1906 14 6 4.7538 -1.6014 8.2864 15 6 3.2708 -2.0527 8.2178 16 1 2.7180 -1.8084 9.1249 17 6 2.6706 -1.4053 6.9573 18 7 3.3455 -3.5131 7.9762 19 6 2.2025 -3.9737 7.1765 20 6 2.5142 -5.3248 6.5864 21 8 3.5831 -5.8525 6.8104 22 7 1.6048 -5.9473 5.8106 23 6 1.8885 -7.1763 5.2733 24 1 2.8406 -7.6458 5.4721 25 6 0.9511 -7.8180 4.4731 26 7 1.2229 -8.9962 3.9585 27 14 -0.6960 -7.0062 4.1299 28 1 -1.6741 -7.4116 5.1710 29 1 -0.5342 -5.5302 4.1505 30 1 -1.1888 -7.4316 2.7952 31 6 4.6199 -3.8011 7.2915 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4426 0.0005 38 1 1.6767 1.9564 -0.8899 39 1 2.5279 -0.3923 4.5918 40 1 5.1202 -0.7541 5.8150 41 1 5.3553 -2.3076 4.9763 42 1 4.8514 -0.5350 8.0828 43 1 5.2008 -1.8596 9.2464 44 1 1.6015 -1.6138 6.9144 45 1 2.8320 -0.3278 6.9890 46 1 2.0107 -3.2620 6.3735 47 1 1.3209 -4.0497 7.8129 48 1 0.7498 -5.5255 5.6318 49 1 0.5684 -9.4443 3.4001 50 1 5.2182 -4.4870 7.8912 51 1 4.4261 -4.2353 6.3107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484319840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:26 Heat of formation + Delta-G solvation = 27.580319 kcal Electronic energy + Delta-G solvation = -31997.495021 eV Core-core repulsion = 27899.844214 eV Total energy + Delta-G solvation = -4097.650808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67436 -39.31728 -37.99246 -36.69680 -34.95906 -33.99832 -32.88115 -32.28489 -31.58140 -30.77565 -29.81706 -27.62359 -26.73798 -24.84687 -24.56654 -23.79100 -22.43487 -21.36861 -20.23448 -19.93602 -19.23743 -18.53125 -18.00041 -17.07783 -16.33952 -15.89410 -15.66780 -15.26577 -15.00949 -14.77639 -14.71329 -14.66821 -13.94568 -13.84633 -13.55809 -13.35009 -13.18609 -12.85693 -12.72027 -12.67201 -12.47051 -12.40874 -12.32422 -12.16942 -11.87767 -11.84899 -11.80158 -11.60006 -11.23868 -11.10399 -10.87549 -10.73646 -10.53754 -10.52673 -10.43596 -10.36096 -10.12745 -10.03818 -9.89868 -9.42400 -9.10790 -8.25113 -8.05226 -7.85679 -6.23486 -3.73275 1.50406 2.15885 2.93839 3.09613 3.11795 3.19612 3.48066 3.77855 3.93355 4.11014 4.17887 4.46856 4.51476 4.53865 4.69499 4.75152 4.77052 4.88103 5.02761 5.11758 5.13231 5.15243 5.17700 5.29447 5.30907 5.35709 5.43599 5.45095 5.48079 5.49928 5.58356 5.69532 5.75198 5.80108 5.84411 5.88958 5.96017 5.97189 6.07851 6.11859 6.13413 6.20354 6.35808 6.55810 6.78983 7.08448 7.31374 7.31811 7.34439 7.65539 8.11562 8.22168 8.66435 9.02274 9.50065 9.88332 10.89754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006610 B = 0.004701 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4234.935010 B = 5954.916041 C = 9276.755691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.217 4.217 6 C 0.623 3.377 7 O -0.498 6.498 8 N -0.717 5.717 9 C 0.113 3.887 10 H 0.122 0.878 11 C -0.123 4.123 12 C -0.119 4.119 13 H 0.093 0.907 14 C -0.121 4.121 15 C 0.075 3.925 16 H 0.104 0.896 17 C -0.156 4.156 18 N -0.503 5.503 19 C 0.003 3.997 20 C 0.446 3.554 21 O -0.561 6.561 22 N -0.584 5.584 23 C -0.299 4.299 24 H 0.121 0.879 25 C 0.043 3.957 26 N -0.881 5.881 27 Si 0.876 3.124 28 H -0.270 1.270 29 H -0.271 1.271 30 H -0.276 1.276 31 C 0.054 3.946 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.369 0.631 49 H 0.272 0.728 50 H 0.080 0.920 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 26.430 -1.288 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.220 4.220 6 C 0.409 3.591 7 O -0.372 6.372 8 N -0.368 5.368 9 C 0.010 3.990 10 H 0.140 0.860 11 C -0.162 4.162 12 C -0.139 4.139 13 H 0.111 0.889 14 C -0.159 4.159 15 C -0.034 4.034 16 H 0.122 0.878 17 C -0.196 4.196 18 N -0.227 5.227 19 C -0.128 4.128 20 C 0.232 3.768 21 O -0.444 6.444 22 N -0.222 5.222 23 C -0.428 4.428 24 H 0.138 0.862 25 C -0.160 4.160 26 N -0.521 5.521 27 Si 0.703 3.297 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.202 1.202 31 C -0.073 4.073 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.201 0.799 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.138 24.730 -0.853 24.746 hybrid contribution -1.633 1.372 -1.227 2.461 sum -1.495 26.103 -2.081 26.228 Atomic orbital electron populations 1.21845 0.92697 1.03084 1.02754 1.18503 0.96316 0.95134 0.91055 1.21839 1.01700 0.93888 1.02779 1.22590 0.94283 0.96466 0.95035 1.20784 1.03755 1.00472 0.97023 1.14785 0.78598 0.84895 0.80809 1.91012 1.44405 1.16615 1.85169 1.45880 1.65417 1.18414 1.07069 1.21994 0.94093 1.00088 0.82805 0.86039 1.22175 0.94696 1.00606 0.98689 1.22982 1.00280 0.97033 0.93641 0.88869 1.22940 0.94729 0.98958 0.99261 1.23057 0.96616 0.87681 0.96075 0.87802 1.22595 1.00845 1.00999 0.95118 1.63672 1.01879 1.12136 1.45030 1.22733 0.95692 0.96636 0.97742 1.19596 0.85943 0.87604 0.83639 1.90566 1.23990 1.66989 1.62809 1.42175 1.15684 1.19039 1.45303 1.19424 1.04735 0.92238 1.26386 0.86185 1.25004 0.98214 0.95870 0.96862 1.69617 1.35603 1.13790 1.33071 0.86711 0.84491 0.79459 0.79046 1.19588 1.19625 1.20156 1.23205 0.89132 0.93872 1.01096 0.91998 0.91144 0.91772 0.88125 0.92027 0.92012 0.91177 0.76740 0.91990 0.91131 0.91048 0.90582 0.90667 0.90769 0.90508 0.89320 0.79870 0.91699 0.90137 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.15 37.16 0.34 -0.65 16 2 C 0.01 0.06 3.30 -93.40 -0.31 -0.25 16 3 C -0.14 -0.83 9.15 37.16 0.34 -0.49 16 4 C -0.08 -0.95 12.56 -37.13 -0.47 -1.42 16 5 C -0.22 -3.10 13.61 -38.84 -0.53 -3.63 16 6 C 0.62 10.24 7.61 -14.34 -0.11 10.13 16 7 O -0.50 -10.85 16.74 5.27 0.09 -10.76 16 8 N -0.72 -9.04 5.05 -56.24 -0.28 -9.32 16 9 C 0.11 1.56 1.53 -67.92 -0.10 1.45 16 10 H 0.12 2.20 2.63 -51.93 -0.14 2.07 16 11 C -0.12 -1.63 5.06 -26.22 -0.13 -1.76 16 12 C -0.12 -1.58 4.32 -87.95 -0.38 -1.96 16 13 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.12 -1.29 6.17 -24.31 -0.15 -1.44 16 15 C 0.07 0.88 4.37 -65.38 -0.29 0.59 16 16 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.16 -1.67 4.34 -26.27 -0.11 -1.78 16 18 N -0.50 -8.25 5.30 -223.50 -1.19 -9.44 16 19 C 0.00 0.05 4.66 -4.98 -0.02 0.03 16 20 C 0.45 10.67 6.77 -10.99 -0.07 10.60 16 21 O -0.56 -15.27 12.73 5.55 0.07 -15.19 16 22 N -0.58 -14.85 5.09 -10.96 -0.06 -14.90 16 23 C -0.30 -8.89 10.16 -14.93 -0.15 -9.04 16 24 H 0.12 4.04 7.39 -52.49 -0.39 3.65 16 25 C 0.04 1.25 5.50 -17.47 -0.10 1.15 16 26 N -0.88 -26.78 13.96 55.50 0.77 -26.01 16 27 Si 0.88 20.60 27.74 -169.99 -4.72 15.89 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.97 6.52 56.52 0.37 -5.60 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 31 C 0.05 0.96 4.01 -2.59 -0.01 0.95 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.40 3.61 8.57 -40.82 -0.35 3.26 16 40 H 0.06 0.68 7.98 -51.93 -0.41 0.26 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.79 7.03 -51.93 -0.37 0.42 16 45 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16 46 H 0.08 1.28 3.25 -51.93 -0.17 1.12 16 47 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.37 8.43 5.76 -40.82 -0.24 8.20 16 49 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.08 1.56 7.97 -51.93 -0.41 1.14 16 51 H 0.09 1.94 4.32 -51.93 -0.22 1.71 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -36.40 396.26 -9.34 -45.75 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -7.75 Total: 15.54 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.25 Total: 2.48 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.75 Total: -59.67 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: 0.16 Total: -25.95 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.72 Total: 15.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.40 -9.34 -45.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484319840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.328 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds