Wall clock time and date at job start Wed Apr 1 2020 04:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46825 * 2 1 4 4 C 1.47193 * 109.47107 * 120.00053 * 2 1 3 5 5 C 2.64600 * 109.47135 * 119.99924 * 2 1 3 6 6 C 4.07795 * 109.47097 * 119.99924 * 2 1 3 7 7 O 1.21613 * 119.99900 * 72.96864 * 6 5 4 8 8 N 1.34773 * 120.00182 * 252.97136 * 6 5 4 9 9 C 1.46499 * 120.00029 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.32216 * 325.35049 * 9 8 6 11 11 C 1.53028 * 109.33097 * 84.99765 * 9 8 6 12 12 C 1.53959 * 108.84560 * 175.70770 * 11 9 8 13 13 H 1.09002 * 112.96781 * 169.10746 * 12 11 9 14 14 C 1.55407 * 106.42972 * 293.87935 * 12 11 9 15 15 C 1.55168 * 100.42772 * 73.29041 * 14 12 11 16 16 H 1.09002 * 112.49957 * 162.70198 * 15 14 12 17 17 C 1.52988 * 109.32132 * 205.88708 * 9 8 6 18 18 N 1.48211 * 104.21994 * 40.59006 * 15 14 12 19 19 C 1.46903 * 111.00438 * 211.59385 * 18 15 14 20 20 C 1.50695 * 109.47430 * 162.24348 * 19 18 15 21 21 O 1.21291 * 119.99814 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99842 * 179.97438 * 20 19 18 23 23 C 1.37098 * 119.99761 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00046 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00105 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00178 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99580 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.46992 * 270.00072 * 27 25 23 29 29 H 1.48498 * 109.47320 * 30.00411 * 27 25 23 30 30 H 1.48499 * 109.46666 * 150.00431 * 27 25 23 31 31 C 1.47509 * 108.15640 * 333.58900 * 18 15 14 32 32 H 1.08996 * 109.47290 * 299.99828 * 1 2 3 33 33 H 1.09000 * 109.46889 * 60.00089 * 1 2 3 34 34 H 1.09002 * 109.46755 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47290 * 240.00172 * 2 1 3 36 36 H 1.09000 * 109.46585 * 60.00127 * 3 2 1 37 37 H 1.08995 * 109.46744 * 179.97438 * 3 2 1 38 38 H 1.08993 * 109.47069 * 299.99942 * 3 2 1 39 39 H 0.97004 * 119.99737 * 359.97438 * 8 6 5 40 40 H 1.08997 * 109.57331 * 55.89701 * 11 9 8 41 41 H 1.09000 * 109.67633 * 295.57903 * 11 9 8 42 42 H 1.08998 * 111.22419 * 315.49757 * 14 12 11 43 43 H 1.09002 * 111.26183 * 191.10028 * 14 12 11 44 44 H 1.09002 * 109.53814 * 64.71052 * 17 9 8 45 45 H 1.08999 * 109.53747 * 304.46786 * 17 9 8 46 46 H 1.09000 * 109.46454 * 42.24171 * 19 18 15 47 47 H 1.09004 * 109.46969 * 282.24953 * 19 18 15 48 48 H 0.96997 * 120.00294 * 0.02562 * 22 20 19 49 49 H 0.97000 * 120.00191 * 179.97438 * 26 25 23 50 50 H 1.08994 * 109.98387 * 120.37206 * 31 18 15 51 51 H 1.08999 * 109.98389 * 241.67726 * 31 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3297 7 8 3.3148 -3.0584 3.2448 8 7 2.8670 -1.2987 4.5242 9 6 3.3558 -1.9891 5.7203 10 1 3.1182 -3.0503 5.6465 11 6 4.8729 -1.8156 5.8208 12 6 5.3601 -2.4517 7.1355 13 1 6.4455 -2.5358 7.1906 14 6 4.7538 -1.6014 8.2864 15 6 3.2708 -2.0527 8.2178 16 1 2.7180 -1.8084 9.1249 17 6 2.6706 -1.4053 6.9573 18 7 3.3455 -3.5131 7.9762 19 6 2.2025 -3.9737 7.1765 20 6 2.5142 -5.3248 6.5864 21 8 3.5831 -5.8525 6.8104 22 7 1.6048 -5.9473 5.8106 23 6 1.8885 -7.1763 5.2733 24 1 2.8406 -7.6458 5.4721 25 6 0.9511 -7.8180 4.4731 26 7 1.2229 -8.9962 3.9585 27 14 -0.6960 -7.0062 4.1299 28 1 -1.6741 -7.4116 5.1710 29 1 -0.5342 -5.5302 4.1505 30 1 -1.1888 -7.4316 2.7952 31 6 4.6199 -3.8011 7.2915 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4426 0.0005 38 1 1.6767 1.9564 -0.8899 39 1 2.5279 -0.3923 4.5918 40 1 5.1202 -0.7541 5.8150 41 1 5.3553 -2.3076 4.9763 42 1 4.8514 -0.5350 8.0828 43 1 5.2008 -1.8596 9.2464 44 1 1.6015 -1.6138 6.9144 45 1 2.8320 -0.3278 6.9890 46 1 2.0107 -3.2620 6.3735 47 1 1.3209 -4.0497 7.8129 48 1 0.7498 -5.5255 5.6318 49 1 0.5684 -9.4443 3.4001 50 1 5.2182 -4.4870 7.8912 51 1 4.4261 -4.2353 6.3107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484319840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:25 Heat of formation + Delta-G solvation = -2.155610 kcal Electronic energy + Delta-G solvation = -31998.784468 eV Core-core repulsion = 27899.844214 eV Total energy + Delta-G solvation = -4098.940254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.87202 -40.66752 -39.81855 -37.38409 -36.36364 -35.93811 -34.21967 -33.75993 -33.21372 -31.87035 -30.92181 -28.36264 -28.07920 -26.31141 -25.53157 -25.44990 -23.25044 -22.41604 -21.67243 -21.19665 -21.00042 -20.00975 -19.52739 -18.26068 -17.62464 -17.20774 -16.97223 -16.71219 -16.37736 -16.21359 -16.00880 -15.57157 -15.38476 -15.09027 -14.82179 -14.62748 -14.50885 -14.38616 -14.19730 -13.81896 -13.70468 -13.44259 -13.21311 -13.10474 -13.02644 -12.99071 -12.68087 -12.51146 -12.47564 -12.37686 -12.34289 -12.14913 -12.06468 -11.85528 -11.66414 -11.44246 -11.41754 -11.32806 -11.22278 -11.08536 -10.32527 -10.27504 -10.10338 -9.15211 -8.47104 -6.06415 0.40466 1.17545 1.19884 1.26223 1.33911 1.87523 1.88069 2.15678 2.36427 2.68487 3.04914 3.08491 3.17241 3.46705 3.57875 3.78656 3.94147 4.00818 4.06483 4.07521 4.10980 4.12088 4.14351 4.28739 4.29812 4.43723 4.46211 4.49058 4.62229 4.69719 4.77897 4.79302 4.90035 4.92662 4.98021 5.02742 5.09194 5.10363 5.14271 5.24218 5.28171 5.28997 5.33109 5.36142 5.37724 5.47547 5.85374 5.96168 6.11320 6.15385 6.30678 6.53097 6.81750 7.00328 7.32219 7.88236 8.71107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006610 B = 0.004701 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4234.935010 B = 5954.916041 C = 9276.755691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.001 3.999 3 C -0.141 4.141 4 C -0.040 4.040 5 C -0.276 4.276 6 C 0.622 3.378 7 O -0.572 6.572 8 N -0.691 5.691 9 C 0.109 3.891 10 H 0.073 0.927 11 C -0.116 4.116 12 C -0.115 4.115 13 H 0.100 0.900 14 C -0.106 4.106 15 C 0.073 3.927 16 H 0.136 0.864 17 C -0.148 4.148 18 N -0.516 5.516 19 C 0.019 3.981 20 C 0.444 3.556 21 O -0.604 6.604 22 N -0.589 5.589 23 C -0.325 4.325 24 H 0.054 0.946 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.960 3.040 28 H -0.245 1.245 29 H -0.247 1.247 30 H -0.270 1.270 31 C 0.059 3.941 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.420 0.580 40 H 0.099 0.901 41 H 0.029 0.971 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.119 0.881 48 H 0.385 0.615 49 H 0.280 0.720 50 H 0.046 0.954 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 32.647 -0.765 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 C -0.198 4.198 4 C -0.042 4.042 5 C -0.278 4.278 6 C 0.410 3.590 7 O -0.452 6.452 8 N -0.342 5.342 9 C 0.005 3.995 10 H 0.091 0.909 11 C -0.155 4.155 12 C -0.135 4.135 13 H 0.118 0.882 14 C -0.144 4.144 15 C -0.035 4.035 16 H 0.154 0.846 17 C -0.186 4.186 18 N -0.241 5.241 19 C -0.112 4.112 20 C 0.232 3.768 21 O -0.488 6.488 22 N -0.230 5.230 23 C -0.455 4.455 24 H 0.072 0.928 25 C -0.212 4.212 26 N -0.573 5.573 27 Si 0.780 3.220 28 H -0.169 1.169 29 H -0.171 1.171 30 H -0.195 1.195 31 C -0.069 4.069 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.259 0.741 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.114 0.886 47 H 0.137 0.863 48 H 0.220 0.780 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.919 31.030 -0.282 31.168 hybrid contribution -0.508 -0.566 -1.433 1.622 sum -3.426 30.464 -1.715 30.704 Atomic orbital electron populations 1.21864 0.91479 1.02586 1.04258 1.18912 0.97228 0.96229 0.89331 1.21841 1.01436 0.92271 1.04214 1.23525 0.91650 0.94638 0.94427 1.20599 1.06426 1.02720 0.98099 1.15128 0.77525 0.84108 0.82289 1.90983 1.48022 1.19853 1.86330 1.45666 1.63858 1.18977 1.05700 1.21935 0.94866 0.98037 0.84673 0.90909 1.22106 0.94211 1.02145 0.97004 1.22922 1.00383 0.94781 0.95386 0.88216 1.22961 0.93200 1.00355 0.97836 1.23373 0.98132 0.84214 0.97767 0.84619 1.22588 1.00720 1.03280 0.92062 1.63664 1.00370 1.16088 1.43995 1.22683 0.97137 0.92564 0.98794 1.20917 0.84653 0.89334 0.81889 1.90555 1.25814 1.68747 1.63709 1.42020 1.16894 1.18007 1.46105 1.18986 1.03148 0.94560 1.28765 0.92763 1.26064 1.03269 0.96307 0.95549 1.69795 1.37810 1.15802 1.33888 0.85435 0.77618 0.79395 0.79516 1.16903 1.17089 1.19509 1.22844 0.90539 0.95964 0.97523 0.91666 0.88545 0.93273 0.87005 0.91596 0.92467 0.88798 0.74136 0.88238 0.95247 0.87104 0.90000 0.89637 0.86209 0.88559 0.86348 0.78031 0.91093 0.93588 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.15 71.98 0.66 -0.84 16 2 C 0.00 0.01 3.30 -12.60 -0.04 -0.03 16 3 C -0.14 -1.12 9.15 71.99 0.66 -0.47 16 4 C -0.04 -0.88 12.56 31.12 0.39 -0.49 16 5 C -0.28 -7.86 13.61 30.01 0.41 -7.46 16 6 C 0.62 21.13 7.61 85.49 0.65 21.78 16 7 O -0.57 -27.11 16.74 -4.07 -0.07 -27.18 16 8 N -0.69 -16.54 5.05 -450.11 -2.27 -18.81 16 9 C 0.11 2.86 1.53 45.00 0.07 2.93 16 10 H 0.07 2.74 2.63 -2.39 -0.01 2.73 16 11 C -0.12 -3.00 5.06 30.93 0.16 -2.85 16 12 C -0.11 -2.97 4.32 -9.06 -0.04 -3.01 16 13 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.11 -1.80 6.17 32.17 0.20 -1.60 16 15 C 0.07 1.40 4.37 45.71 0.20 1.60 16 16 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 17 C -0.15 -2.44 4.34 30.89 0.13 -2.31 16 18 N -0.52 -16.63 5.30 -861.01 -4.57 -21.19 16 19 C 0.02 0.66 4.66 85.55 0.40 1.06 16 20 C 0.44 22.64 6.77 87.66 0.59 23.23 16 21 O -0.60 -36.29 12.73 -3.06 -0.04 -36.33 16 22 N -0.59 -31.60 5.09 -306.99 -1.56 -33.16 16 23 C -0.33 -20.96 10.16 84.04 0.85 -20.10 16 24 H 0.05 4.10 7.39 -2.91 -0.02 4.08 16 25 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 26 N -0.93 -60.03 13.96 21.66 0.30 -59.73 16 27 Si 0.96 43.06 27.74 68.60 1.90 44.96 16 28 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 29 H -0.25 -10.00 6.52 99.48 0.65 -9.35 16 30 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 31 C 0.06 2.24 4.01 86.77 0.35 2.59 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.42 6.23 8.57 -92.71 -0.79 5.43 16 40 H 0.10 1.81 7.98 -2.39 -0.02 1.79 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.11 1.13 7.75 -2.39 -0.02 1.11 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.32 7.03 -2.39 -0.02 1.30 16 45 H 0.12 1.02 8.00 -2.39 -0.02 1.00 16 46 H 0.10 3.13 3.25 -2.39 -0.01 3.12 16 47 H 0.12 3.49 8.14 -2.38 -0.02 3.48 16 48 H 0.38 17.72 5.76 -92.71 -0.53 17.19 16 49 H 0.28 16.38 8.31 -92.71 -0.77 15.61 16 50 H 0.05 1.97 7.97 -2.39 -0.02 1.96 16 51 H 0.04 1.73 4.32 -2.39 -0.01 1.71 16 Total: -1.00 -95.44 396.26 -0.61 -96.05 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.41 Total: 41.69 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.10 Total: 13.70 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -8.10 Total: -132.90 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -0.11 Total: -63.50 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.90 Total: 44.96 kcal Total: -95.44 -0.61 -96.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484319840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.893 kcal (2) G-P(sol) polarization free energy of solvation -95.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds