Wall clock time and date at job start Wed Apr 1 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46999 * 2 1 4 4 C 1.52995 * 109.47279 * 176.03955 * 3 2 1 5 5 H 1.09004 * 109.46831 * 56.40359 * 4 3 2 6 6 C 1.50697 * 109.47419 * 176.39997 * 4 3 2 7 7 O 1.21283 * 119.99670 * 132.81956 * 6 4 3 8 8 N 1.34774 * 120.00066 * 312.82594 * 6 4 3 9 9 C 1.46500 * 119.99876 * 175.27405 * 8 6 4 10 10 C 1.53007 * 109.47071 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.67680 * 59.33388 * 10 9 8 12 12 C 1.53299 * 109.67946 * 179.85562 * 10 9 8 13 13 O 1.42961 * 109.21606 * 172.02576 * 12 10 9 14 14 C 1.42957 * 114.17060 * 297.41262 * 13 12 10 15 15 C 1.53300 * 109.21969 * 62.58451 * 14 13 12 16 16 N 1.47150 * 108.38655 * 307.69936 * 15 14 13 17 17 C 1.36938 * 120.98524 * 230.55842 * 16 15 14 18 18 H 1.08003 * 120.00209 * 143.58944 * 17 16 15 19 19 C 1.38810 * 119.99857 * 323.58922 * 17 16 15 20 20 N 1.31626 * 119.99974 * 355.34190 * 19 17 16 21 21 Si 1.86795 * 120.00335 * 175.33577 * 19 17 16 22 22 H 1.48507 * 109.46825 * 59.99890 * 21 19 17 23 23 H 1.48494 * 109.47644 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47125 * 300.00258 * 21 19 17 25 25 C 1.50700 * 109.47160 * 296.40753 * 4 3 2 26 26 C 1.38228 * 119.61400 * 274.72691 * 25 4 3 27 27 C 1.38628 * 119.16363 * 179.71070 * 26 25 4 28 28 C 1.38682 * 118.41403 * 0.54790 * 27 26 25 29 29 C 1.38182 * 119.16492 * 359.73385 * 28 27 26 30 30 N 1.31851 * 119.62338 * 94.99529 * 25 4 3 31 31 H 1.08999 * 109.47163 * 300.00556 * 1 2 3 32 32 H 1.09002 * 109.46896 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47018 * 60.00490 * 1 2 3 34 34 H 1.08997 * 109.46745 * 119.99775 * 2 1 3 35 35 H 1.08996 * 109.47215 * 239.99981 * 2 1 3 36 36 H 1.09005 * 109.47075 * 296.03992 * 3 2 1 37 37 H 1.09001 * 109.46971 * 56.03471 * 3 2 1 38 38 H 0.97000 * 120.00228 * 355.27435 * 8 6 4 39 39 H 1.09003 * 109.47268 * 299.99980 * 9 8 6 40 40 H 1.09005 * 109.47235 * 59.99969 * 9 8 6 41 41 H 1.08996 * 109.50814 * 291.94409 * 12 10 9 42 42 H 1.08997 * 109.51099 * 52.04893 * 12 10 9 43 43 H 1.08997 * 109.51785 * 182.50884 * 14 13 12 44 44 H 1.09008 * 109.51319 * 302.66858 * 14 13 12 45 45 H 1.09000 * 109.67928 * 67.42455 * 15 14 13 46 46 H 1.09005 * 109.67967 * 187.97776 * 15 14 13 47 47 H 0.97000 * 120.00168 * 179.97438 * 20 19 17 48 48 H 1.08001 * 120.42279 * 359.97438 * 26 25 4 49 49 H 1.07994 * 120.79545 * 180.30322 * 27 26 25 50 50 H 1.08005 * 120.41208 * 179.75657 * 28 27 26 51 51 H 1.08000 * 119.61090 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5667 1.4438 0.0996 5 1 3.9846 0.8558 -0.7176 6 6 4.0749 2.8597 0.0107 7 8 4.8998 3.2589 0.8051 8 7 3.6125 3.6824 -0.9515 9 6 4.0274 5.0872 -0.9756 10 6 3.3650 5.7943 -2.1599 11 1 2.2810 5.7289 -2.0668 12 6 3.7932 7.2660 -2.1876 13 8 3.3226 7.8703 -3.3947 14 6 3.8679 7.2993 -4.5864 15 6 3.4437 5.8292 -4.6815 16 7 3.7942 5.1623 -3.4176 17 6 4.4995 3.9885 -3.4118 18 1 5.2296 3.8009 -2.6383 19 6 4.2760 3.0397 -4.4001 20 7 3.3233 3.2270 -5.2888 21 14 5.3273 1.4973 -4.4690 22 1 5.1757 0.7379 -3.2018 23 1 4.8903 0.6507 -5.6080 24 1 6.7515 1.8766 -4.6514 25 6 3.9847 0.8417 1.4164 26 6 4.0451 1.6394 2.5437 27 6 4.4249 1.0746 3.7514 28 6 4.7423 -0.2752 3.7778 29 6 4.6646 -1.0082 2.6090 30 7 4.2936 -0.4386 1.4789 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.7358 1.9355 -0.9234 37 1 1.6198 1.9764 0.8523 38 1 3.0051 3.3444 -1.6280 39 1 3.7246 5.5715 -0.0472 40 1 5.1110 5.1444 -1.0786 41 1 3.3661 7.7856 -1.3299 42 1 4.8806 7.3296 -2.1475 43 1 3.4948 7.8428 -5.4545 44 1 4.9557 7.3630 -4.5560 45 1 2.3675 5.7675 -4.8431 46 1 3.9677 5.3487 -5.5078 47 1 3.1673 2.5642 -5.9796 48 1 3.7954 2.6885 2.4853 49 1 4.4763 1.6722 4.6494 50 1 5.0460 -0.7474 4.7004 51 1 4.9097 -2.0599 2.6214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484601023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:01 Heat of formation + Delta-G solvation = -27.518507 kcal Electronic energy + Delta-G solvation = -32303.922601 eV Core-core repulsion = 28203.882529 eV Total energy + Delta-G solvation = -4100.040072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.61166 -39.15205 -38.31033 -35.67235 -35.34016 -33.60364 -32.40808 -31.98976 -31.57720 -30.51816 -29.08270 -27.21063 -25.66031 -24.67996 -23.47398 -23.46965 -22.48270 -21.57210 -20.96589 -19.81227 -19.45315 -17.25582 -16.83661 -16.48208 -16.02173 -15.86111 -15.65812 -15.38518 -15.03229 -14.70381 -14.64550 -14.37695 -14.16730 -13.88717 -13.71266 -13.47769 -13.22883 -13.08935 -12.90714 -12.82576 -12.55204 -12.34218 -12.03303 -11.77977 -11.59708 -11.32800 -11.08131 -11.03842 -10.95236 -10.91483 -10.76798 -10.52436 -10.43617 -10.28183 -10.13738 -9.79505 -9.67849 -9.34238 -9.28214 -8.96243 -8.82186 -8.68169 -8.29919 -6.68492 -5.94425 -3.49956 1.20749 1.40596 3.07950 3.28349 3.34670 3.38075 3.58477 3.94531 4.31328 4.38954 4.51083 4.74019 4.88795 4.96773 5.05471 5.12308 5.13859 5.19362 5.23849 5.28710 5.41835 5.47445 5.57126 5.67935 5.68923 5.72493 5.83104 5.83543 5.87497 5.94693 5.99992 6.02939 6.06888 6.13773 6.15942 6.21403 6.23492 6.28851 6.31174 6.37322 6.44794 6.50184 6.73613 6.80515 7.04455 7.07236 7.46391 7.68443 7.84391 8.08610 8.16502 8.30103 8.75022 9.03466 9.61447 10.23915 11.11572 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.003734 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.796300 B = 7497.273154 C = 8308.396991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.062 4.062 5 H 0.117 0.883 6 C 0.516 3.484 7 O -0.557 6.557 8 N -0.687 5.687 9 C 0.136 3.864 10 C 0.125 3.875 11 H 0.041 0.959 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.034 3.966 15 C 0.146 3.854 16 N -0.590 5.590 17 C -0.258 4.258 18 H 0.068 0.932 19 C 0.017 3.983 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.283 1.283 25 C 0.152 3.848 26 C -0.129 4.129 27 C -0.085 4.085 28 C -0.180 4.180 29 C 0.089 3.911 30 N -0.478 5.478 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.089 0.911 47 H 0.257 0.743 48 H 0.141 0.859 49 H 0.130 0.870 50 H 0.129 0.871 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -2.891 12.607 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.143 4.143 4 C -0.084 4.084 5 H 0.135 0.865 6 C 0.301 3.699 7 O -0.438 6.438 8 N -0.338 5.338 9 C 0.012 3.988 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.044 4.044 15 C 0.020 3.980 16 N -0.316 5.316 17 C -0.388 4.388 18 H 0.086 0.914 19 C -0.183 4.183 20 N -0.539 5.539 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.209 1.209 25 C 0.014 3.986 26 C -0.149 4.149 27 C -0.111 4.111 28 C -0.200 4.200 29 C -0.068 4.068 30 N -0.187 5.187 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.255 0.745 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.159 0.841 49 H 0.148 0.852 50 H 0.147 0.853 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.824 -3.064 12.232 12.922 hybrid contribution 0.715 -0.807 0.203 1.097 sum -2.109 -3.871 12.435 13.193 Atomic orbital electron populations 1.21767 0.95940 1.01361 1.01758 1.21513 0.95455 0.96095 1.02826 1.21600 0.91345 0.98239 1.03146 1.20202 0.97772 0.94349 0.96097 0.86472 1.20094 0.81822 0.86817 0.81212 1.90646 1.33436 1.76953 1.42719 1.45949 1.48586 1.10099 1.29185 1.21166 1.00113 0.80884 0.96622 1.21441 0.96874 0.91967 0.87903 0.94104 1.22864 0.98280 0.94037 0.87158 1.87799 1.69841 1.59150 1.14297 1.23364 0.97125 0.97571 0.86321 1.21391 0.98502 0.87744 0.90319 1.44018 1.64455 1.24387 0.98764 1.19061 1.14828 0.92326 1.12569 0.91432 1.25270 0.96663 0.97390 0.98991 1.69936 1.31207 1.35442 1.17341 0.86540 0.80319 0.83345 0.77675 1.20303 1.21407 1.20893 1.20504 0.94646 0.89318 0.94106 1.22115 0.98836 1.01510 0.92442 1.21563 0.96548 0.94896 0.98094 1.22068 1.02722 0.95288 0.99876 1.22616 0.96239 1.00029 0.87906 1.67403 1.10700 1.11822 1.28726 0.93094 0.92970 0.92431 0.91765 0.91453 0.90081 0.91503 0.74503 0.92392 0.91462 0.89978 0.93559 0.90276 0.94165 0.95195 0.89321 0.93286 0.84136 0.85203 0.85291 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.56 5.77 -26.73 -0.15 -1.71 16 3 C -0.11 -1.43 4.52 -26.73 -0.12 -1.55 16 4 C -0.06 -1.00 2.59 -92.93 -0.24 -1.24 16 5 H 0.12 2.08 8.14 -51.93 -0.42 1.65 16 6 C 0.52 9.27 6.80 -10.99 -0.07 9.20 16 7 O -0.56 -11.17 13.78 5.55 0.08 -11.09 16 8 N -0.69 -12.36 3.68 -60.29 -0.22 -12.58 16 9 C 0.14 2.42 4.46 -4.04 -0.02 2.40 16 10 C 0.13 2.36 3.20 -67.42 -0.22 2.15 16 11 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 12 C 0.06 0.96 6.29 37.31 0.23 1.19 16 13 O -0.39 -7.48 10.74 -35.23 -0.38 -7.85 16 14 C 0.03 0.64 6.99 37.31 0.26 0.90 16 15 C 0.15 3.24 5.34 -3.53 -0.02 3.22 16 16 N -0.59 -13.22 3.01 -164.29 -0.50 -13.72 16 17 C -0.26 -6.25 6.86 -15.06 -0.10 -6.35 16 18 H 0.07 1.69 6.09 -52.48 -0.32 1.38 16 19 C 0.02 0.44 5.16 -17.43 -0.09 0.35 16 20 N -0.90 -23.56 11.20 55.49 0.62 -22.93 16 21 Si 0.89 20.61 29.56 -169.99 -5.02 15.58 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.15 2.40 4.76 -82.59 -0.39 2.01 16 26 C -0.13 -1.90 8.25 -39.44 -0.33 -2.22 16 27 C -0.08 -1.03 10.18 -39.27 -0.40 -1.43 16 28 C -0.18 -1.98 10.11 -39.44 -0.40 -2.38 16 29 C 0.09 1.11 11.18 -17.55 -0.20 0.92 16 30 N -0.48 -7.36 9.47 -9.47 -0.09 -7.45 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.86 6.62 -51.93 -0.34 0.52 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.13 6.92 -51.93 -0.36 0.77 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.42 7.86 6.15 -40.82 -0.25 7.61 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.32 7.51 -51.93 -0.39 0.93 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.17 6.55 -51.93 -0.34 1.83 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 48 H 0.14 2.12 6.35 -52.49 -0.33 1.79 16 49 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 50 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 51 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -28.79 399.65 -9.61 -38.40 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -8.24 Total: 11.49 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.89 Total: 4.14 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.19 Total: -56.69 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.30 Total: -18.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.79 -9.61 -38.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484601023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.883 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds