Wall clock time and date at job start Wed Apr 1 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46999 * 2 1 4 4 C 1.52995 * 109.47279 * 176.03955 * 3 2 1 5 5 H 1.09004 * 109.46831 * 56.40359 * 4 3 2 6 6 C 1.50697 * 109.47419 * 176.39997 * 4 3 2 7 7 O 1.21283 * 119.99670 * 132.81956 * 6 4 3 8 8 N 1.34774 * 120.00066 * 312.82594 * 6 4 3 9 9 C 1.46500 * 119.99876 * 175.27405 * 8 6 4 10 10 C 1.53007 * 109.47071 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.67680 * 59.33388 * 10 9 8 12 12 C 1.53299 * 109.67946 * 179.85562 * 10 9 8 13 13 O 1.42961 * 109.21606 * 172.02576 * 12 10 9 14 14 C 1.42957 * 114.17060 * 297.41262 * 13 12 10 15 15 C 1.53300 * 109.21969 * 62.58451 * 14 13 12 16 16 N 1.47150 * 108.38655 * 307.69936 * 15 14 13 17 17 C 1.36938 * 120.98524 * 230.55842 * 16 15 14 18 18 H 1.08003 * 120.00209 * 143.58944 * 17 16 15 19 19 C 1.38810 * 119.99857 * 323.58922 * 17 16 15 20 20 N 1.31626 * 119.99974 * 355.34190 * 19 17 16 21 21 Si 1.86795 * 120.00335 * 175.33577 * 19 17 16 22 22 H 1.48507 * 109.46825 * 59.99890 * 21 19 17 23 23 H 1.48494 * 109.47644 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47125 * 300.00258 * 21 19 17 25 25 C 1.50700 * 109.47160 * 296.40753 * 4 3 2 26 26 C 1.38228 * 119.61400 * 274.72691 * 25 4 3 27 27 C 1.38628 * 119.16363 * 179.71070 * 26 25 4 28 28 C 1.38682 * 118.41403 * 0.54790 * 27 26 25 29 29 C 1.38182 * 119.16492 * 359.73385 * 28 27 26 30 30 N 1.31851 * 119.62338 * 94.99529 * 25 4 3 31 31 H 1.08999 * 109.47163 * 300.00556 * 1 2 3 32 32 H 1.09002 * 109.46896 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47018 * 60.00490 * 1 2 3 34 34 H 1.08997 * 109.46745 * 119.99775 * 2 1 3 35 35 H 1.08996 * 109.47215 * 239.99981 * 2 1 3 36 36 H 1.09005 * 109.47075 * 296.03992 * 3 2 1 37 37 H 1.09001 * 109.46971 * 56.03471 * 3 2 1 38 38 H 0.97000 * 120.00228 * 355.27435 * 8 6 4 39 39 H 1.09003 * 109.47268 * 299.99980 * 9 8 6 40 40 H 1.09005 * 109.47235 * 59.99969 * 9 8 6 41 41 H 1.08996 * 109.50814 * 291.94409 * 12 10 9 42 42 H 1.08997 * 109.51099 * 52.04893 * 12 10 9 43 43 H 1.08997 * 109.51785 * 182.50884 * 14 13 12 44 44 H 1.09008 * 109.51319 * 302.66858 * 14 13 12 45 45 H 1.09000 * 109.67928 * 67.42455 * 15 14 13 46 46 H 1.09005 * 109.67967 * 187.97776 * 15 14 13 47 47 H 0.97000 * 120.00168 * 179.97438 * 20 19 17 48 48 H 1.08001 * 120.42279 * 359.97438 * 26 25 4 49 49 H 1.07994 * 120.79545 * 180.30322 * 27 26 25 50 50 H 1.08005 * 120.41208 * 179.75657 * 28 27 26 51 51 H 1.08000 * 119.61090 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5667 1.4438 0.0996 5 1 3.9846 0.8558 -0.7176 6 6 4.0749 2.8597 0.0107 7 8 4.8998 3.2589 0.8051 8 7 3.6125 3.6824 -0.9515 9 6 4.0274 5.0872 -0.9756 10 6 3.3650 5.7943 -2.1599 11 1 2.2810 5.7289 -2.0668 12 6 3.7932 7.2660 -2.1876 13 8 3.3226 7.8703 -3.3947 14 6 3.8679 7.2993 -4.5864 15 6 3.4437 5.8292 -4.6815 16 7 3.7942 5.1623 -3.4176 17 6 4.4995 3.9885 -3.4118 18 1 5.2296 3.8009 -2.6383 19 6 4.2760 3.0397 -4.4001 20 7 3.3233 3.2270 -5.2888 21 14 5.3273 1.4973 -4.4690 22 1 5.1757 0.7379 -3.2018 23 1 4.8903 0.6507 -5.6080 24 1 6.7515 1.8766 -4.6514 25 6 3.9847 0.8417 1.4164 26 6 4.0451 1.6394 2.5437 27 6 4.4249 1.0746 3.7514 28 6 4.7423 -0.2752 3.7778 29 6 4.6646 -1.0082 2.6090 30 7 4.2936 -0.4386 1.4789 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.7358 1.9355 -0.9234 37 1 1.6198 1.9764 0.8523 38 1 3.0051 3.3444 -1.6280 39 1 3.7246 5.5715 -0.0472 40 1 5.1110 5.1444 -1.0786 41 1 3.3661 7.7856 -1.3299 42 1 4.8806 7.3296 -2.1475 43 1 3.4948 7.8428 -5.4545 44 1 4.9557 7.3630 -4.5560 45 1 2.3675 5.7675 -4.8431 46 1 3.9677 5.3487 -5.5078 47 1 3.1673 2.5642 -5.9796 48 1 3.7954 2.6885 2.4853 49 1 4.4763 1.6722 4.6494 50 1 5.0460 -0.7474 4.7004 51 1 4.9097 -2.0599 2.6214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484601023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:00 Heat of formation + Delta-G solvation = -44.190800 kcal Electronic energy + Delta-G solvation = -32304.645566 eV Core-core repulsion = 28203.882529 eV Total energy + Delta-G solvation = -4100.763037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.79240 -40.51868 -39.78343 -36.97385 -36.76119 -35.29398 -33.41603 -33.29157 -33.00018 -32.16483 -30.19087 -28.95406 -27.05841 -25.83692 -25.22399 -24.47178 -23.74191 -22.98157 -22.09561 -21.41690 -20.87558 -18.80433 -17.99811 -17.90626 -17.55642 -17.16913 -17.00418 -16.66674 -16.26525 -16.17484 -16.08461 -15.88591 -15.45755 -15.40032 -15.07812 -14.87940 -14.57688 -14.35167 -14.27514 -13.99250 -13.81387 -13.48344 -13.41646 -13.11252 -12.96132 -12.84372 -12.77320 -12.53643 -12.38384 -12.17302 -12.11336 -12.05064 -11.97806 -11.89744 -11.57968 -11.29527 -10.91398 -10.69663 -10.58375 -10.47412 -10.35420 -9.85663 -9.81745 -8.54227 -7.88633 -5.44685 0.21157 0.42578 1.38667 1.43985 1.47068 1.64332 2.23494 2.42957 2.90871 3.04614 3.27689 3.28685 3.45536 3.57314 3.89612 3.94171 4.04436 4.07309 4.09875 4.22369 4.25590 4.26841 4.31388 4.37292 4.45283 4.49181 4.61281 4.64571 4.66596 4.67777 4.68735 4.76412 4.79472 4.87782 4.93017 4.99710 5.02352 5.13771 5.19880 5.24762 5.31067 5.31585 5.34055 5.43328 5.57912 5.65011 5.68829 5.83934 6.31595 6.39925 6.66982 7.07496 7.11903 7.28165 7.75099 8.34168 9.14776 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.003734 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.796300 B = 7497.273154 C = 8308.396991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.097 4.097 4 C -0.057 4.057 5 H 0.094 0.906 6 C 0.517 3.483 7 O -0.577 6.577 8 N -0.689 5.689 9 C 0.143 3.857 10 C 0.126 3.874 11 H 0.040 0.960 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.242 4.242 18 H 0.059 0.941 19 C -0.019 4.019 20 N -0.920 5.920 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.289 1.289 25 C 0.130 3.870 26 C -0.147 4.147 27 C -0.085 4.085 28 C -0.167 4.167 29 C 0.079 3.921 30 N -0.506 5.506 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.411 0.589 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.119 0.881 42 H 0.047 0.953 43 H 0.104 0.896 44 H 0.042 0.958 45 H 0.009 0.991 46 H 0.061 0.939 47 H 0.251 0.749 48 H 0.130 0.870 49 H 0.159 0.841 50 H 0.169 0.831 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 -2.737 15.093 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.135 4.135 4 C -0.079 4.079 5 H 0.112 0.888 6 C 0.303 3.697 7 O -0.459 6.459 8 N -0.339 5.339 9 C 0.018 3.982 10 C 0.020 3.980 11 H 0.058 0.942 12 C -0.021 4.021 13 O -0.315 6.315 14 C -0.032 4.032 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.372 4.372 18 H 0.077 0.923 19 C -0.217 4.217 20 N -0.564 5.564 21 Si 0.763 3.237 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.007 4.007 26 C -0.167 4.167 27 C -0.111 4.111 28 C -0.186 4.186 29 C -0.078 4.078 30 N -0.216 5.216 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.249 0.751 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.148 0.852 49 H 0.176 0.824 50 H 0.186 0.814 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.926 -2.891 14.731 15.295 hybrid contribution 0.796 -0.868 -0.461 1.265 sum -2.130 -3.759 14.270 14.909 Atomic orbital electron populations 1.21736 0.94320 1.02208 1.02133 1.21441 0.96769 0.95177 1.01937 1.21554 0.89848 0.98961 1.03151 1.20116 0.99079 0.92580 0.96143 0.88832 1.20390 0.81269 0.87434 0.80624 1.90622 1.34270 1.77554 1.43448 1.45970 1.48449 1.10398 1.29039 1.21140 0.98744 0.80937 0.97341 1.21573 0.96754 0.93118 0.86533 0.94249 1.22993 0.98657 0.92787 0.87706 1.87804 1.70027 1.59053 1.14652 1.23219 0.97238 0.95276 0.87482 1.21209 0.96778 0.89875 0.89557 1.44213 1.64437 1.24229 1.00198 1.19023 1.14063 0.92653 1.11473 0.92330 1.25635 0.97612 0.99028 0.99378 1.70037 1.32594 1.35825 1.17979 0.85896 0.78890 0.81662 0.77292 1.20305 1.21750 1.21599 1.20398 0.96393 0.89937 0.93969 1.22102 1.00144 1.01018 0.93392 1.21948 0.95300 0.95817 0.98045 1.22483 1.00637 0.94697 1.00822 1.23210 0.95421 1.01476 0.87680 1.67364 1.11820 1.11807 1.30567 0.92098 0.91916 0.92641 0.92182 0.92773 0.90787 0.90422 0.75076 0.89741 0.93410 0.86349 0.93459 0.87813 0.93995 0.97331 0.92047 0.93915 0.85245 0.82361 0.81363 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.12 -2.99 5.77 30.60 0.18 -2.81 16 3 C -0.10 -2.69 4.52 30.59 0.14 -2.55 16 4 C -0.06 -1.90 2.59 -12.29 -0.03 -1.93 16 5 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 6 C 0.52 18.92 6.80 87.66 0.60 19.52 16 7 O -0.58 -23.35 13.78 -3.04 -0.04 -23.39 16 8 N -0.69 -25.07 3.68 -463.04 -1.71 -26.77 16 9 C 0.14 4.97 4.46 86.38 0.39 5.35 16 10 C 0.13 4.66 3.20 44.97 0.14 4.80 16 11 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 12 C 0.06 1.83 6.29 72.08 0.45 2.29 16 13 O -0.40 -14.26 10.74 -148.98 -1.60 -15.86 16 14 C 0.05 1.67 6.99 72.08 0.50 2.17 16 15 C 0.15 6.78 5.34 86.36 0.46 7.24 16 16 N -0.60 -27.24 3.01 -673.70 -2.03 -29.27 16 17 C -0.24 -11.90 6.86 84.03 0.58 -11.32 16 18 H 0.06 3.00 6.09 -2.91 -0.02 2.98 16 19 C -0.02 -0.96 5.16 84.86 0.44 -0.52 16 20 N -0.92 -49.66 11.20 21.65 0.24 -49.42 16 21 Si 0.93 43.43 29.56 68.60 2.03 45.46 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 C 0.13 4.11 4.76 42.55 0.20 4.32 16 26 C -0.15 -4.20 8.25 22.36 0.18 -4.02 16 27 C -0.09 -1.85 10.18 22.47 0.23 -1.63 16 28 C -0.17 -3.14 10.11 22.36 0.23 -2.91 16 29 C 0.08 1.81 11.18 84.67 0.95 2.75 16 30 N -0.51 -15.39 9.47 -183.89 -1.74 -17.13 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.06 1.61 6.62 -2.39 -0.02 1.59 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 2.12 6.92 -2.38 -0.02 2.11 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.41 15.91 6.15 -92.71 -0.57 15.34 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.05 1.87 7.51 -2.38 -0.02 1.85 16 41 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.06 3.08 6.55 -2.38 -0.02 3.07 16 47 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 48 H 0.13 3.90 6.35 -2.91 -0.02 3.89 16 49 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 50 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 51 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -63.26 399.65 1.85 -61.41 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.36 Total: 36.62 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 6.34 Total: 18.35 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.23 Total: -122.59 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.64 Total: -39.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.26 1.85 -61.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484601023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.219 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds