Wall clock time and date at job start Wed Apr 1 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47529 * 2 1 4 4 C 1.53004 * 109.47088 * 120.00754 * 2 1 3 5 5 H 1.09002 * 109.46840 * 301.55247 * 4 2 1 6 6 C 1.50702 * 109.47010 * 181.55607 * 4 2 1 7 7 O 1.21275 * 119.99923 * 271.90701 * 6 4 2 8 8 N 1.34779 * 119.99752 * 91.90033 * 6 4 2 9 9 C 1.46503 * 119.99619 * 185.13935 * 8 6 4 10 10 C 1.53002 * 109.46936 * 180.02562 * 9 8 6 11 11 H 1.08990 * 109.67904 * 300.85066 * 10 9 8 12 12 C 1.53296 * 109.67900 * 180.33500 * 10 9 8 13 13 O 1.42961 * 109.21920 * 187.97978 * 12 10 9 14 14 C 1.42959 * 114.17313 * 62.58017 * 13 12 10 15 15 C 1.53299 * 109.21964 * 297.41858 * 14 13 12 16 16 N 1.47153 * 109.67894 * 61.41060 * 10 9 8 17 17 C 1.36933 * 120.98423 * 350.23154 * 16 10 9 18 18 H 1.08007 * 119.99976 * 29.05989 * 17 16 10 19 19 C 1.38814 * 120.00056 * 209.06040 * 17 16 10 20 20 N 1.31611 * 119.99861 * 13.27152 * 19 17 16 21 21 Si 1.86807 * 119.99856 * 193.27304 * 19 17 16 22 22 H 1.48499 * 109.46821 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47130 * 120.00015 * 21 19 17 24 24 H 1.48496 * 109.46803 * 239.99877 * 21 19 17 25 25 C 1.50700 * 109.47385 * 61.55252 * 4 2 1 26 26 C 1.38666 * 120.41673 * 239.99862 * 25 4 2 27 27 C 1.38633 * 118.41619 * 179.97438 * 26 25 4 28 28 C 1.38223 * 119.16512 * 0.02562 * 27 26 25 29 29 N 1.31857 * 120.76000 * 359.97438 * 28 27 26 30 30 C 1.31882 * 121.72911 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47052 * 299.99876 * 1 2 3 32 32 H 1.08997 * 109.47604 * 59.99099 * 1 2 3 33 33 H 1.09001 * 109.47464 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46634 * 240.00221 * 2 1 3 35 35 H 1.09003 * 109.47356 * 306.89553 * 3 2 1 36 36 H 1.09012 * 109.46772 * 66.88987 * 3 2 1 37 37 H 1.08997 * 109.47436 * 186.89047 * 3 2 1 38 38 H 0.97001 * 120.00471 * 5.14655 * 8 6 4 39 39 H 1.08999 * 109.47412 * 300.00295 * 9 8 6 40 40 H 1.08998 * 109.46928 * 60.00428 * 9 8 6 41 41 H 1.09001 * 109.51469 * 307.89751 * 12 10 9 42 42 H 1.08997 * 109.51317 * 68.00133 * 12 10 9 43 43 H 1.08999 * 109.51100 * 57.33801 * 14 13 12 44 44 H 1.08993 * 109.51564 * 177.49684 * 14 13 12 45 45 H 1.08999 * 109.67780 * 172.01889 * 15 14 13 46 46 H 1.08997 * 109.68136 * 292.57894 * 15 14 13 47 47 H 0.96999 * 119.99608 * 180.02562 * 20 19 17 48 48 H 1.08004 * 120.79482 * 0.02562 * 26 25 4 49 49 H 1.08006 * 120.41828 * 180.02562 * 27 26 25 50 50 H 1.07994 * 119.62061 * 179.72192 * 28 27 26 51 51 H 1.07997 * 119.61885 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6541 -0.2240 2.1390 6 6 3.5465 -0.6881 1.2686 7 8 4.1795 -1.5608 0.7133 8 7 4.1903 0.3117 1.9030 9 6 5.6502 0.4071 1.8272 10 6 6.1242 1.6213 2.6285 11 1 5.6691 2.5265 2.2268 12 6 7.6510 1.7305 2.5455 13 8 8.0993 2.7496 3.4423 14 6 7.8172 2.4840 4.8184 15 6 6.2988 2.4134 5.0177 16 7 5.7465 1.4607 4.0416 17 6 4.9054 0.4549 4.4365 18 1 4.8740 -0.4716 3.8824 19 6 4.0930 0.6262 5.5490 20 7 3.9312 1.8250 6.0675 21 14 3.2293 -0.8450 6.3102 22 1 3.5725 -2.0707 5.5452 23 1 3.6683 -1.0017 7.7201 24 1 1.7603 -0.6319 6.2699 25 6 1.5693 -2.1529 1.2300 26 6 0.7691 -2.6426 2.2510 27 6 0.3594 -3.9657 2.1914 28 6 0.7599 -4.7474 1.1241 29 7 1.5215 -4.2478 0.1706 30 6 1.9299 -2.9940 0.1946 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.5795 1.9907 -0.8219 36 1 1.7809 1.9194 0.9453 37 1 3.1230 1.4449 -0.1233 38 1 3.6870 0.9681 2.4098 39 1 6.0955 -0.4975 2.2415 40 1 5.9535 0.5174 0.7862 41 1 8.0999 0.7772 2.8242 42 1 7.9429 1.9865 1.5270 43 1 8.2666 1.5333 5.1053 44 1 8.2285 3.2829 5.4352 45 1 6.0768 2.0728 6.0290 46 1 5.8613 3.3987 4.8571 47 1 3.3639 1.9446 6.8451 48 1 0.4712 -2.0082 3.0728 49 1 -0.2647 -4.3805 2.9691 50 1 0.4488 -5.7802 1.0725 51 1 2.5526 -2.6202 -0.6047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484605289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:50 Heat of formation + Delta-G solvation = -27.283525 kcal Electronic energy + Delta-G solvation = -32674.117063 eV Core-core repulsion = 28574.087181 eV Total energy + Delta-G solvation = -4100.029882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.63674 -39.22872 -38.39315 -36.13416 -35.32543 -33.65924 -32.46065 -31.60708 -31.33625 -30.48747 -27.89529 -27.17588 -27.00442 -25.21652 -23.52606 -23.49806 -22.47100 -21.79587 -20.62573 -19.83844 -19.40205 -17.27814 -17.04804 -16.52865 -16.08357 -15.81321 -15.70228 -15.43611 -14.88170 -14.77124 -14.57855 -14.19482 -14.15959 -13.85941 -13.70831 -13.35059 -13.19444 -13.02063 -12.94808 -12.75551 -12.54651 -12.41959 -12.16774 -11.97526 -11.83044 -11.61163 -11.16965 -11.11239 -10.94553 -10.88855 -10.78224 -10.70972 -10.45706 -10.29701 -10.07397 -9.79859 -9.70812 -9.36222 -9.29842 -9.03685 -8.78010 -8.72322 -8.31956 -6.81869 -5.96580 -3.43698 1.20911 1.39971 3.06713 3.20179 3.31214 3.35308 3.64304 3.99611 4.28673 4.45850 4.49008 4.73556 4.79274 4.86452 4.97628 5.07751 5.11142 5.17464 5.20850 5.22301 5.40585 5.48906 5.54918 5.61629 5.63324 5.66742 5.68960 5.81156 5.83914 5.89675 5.94252 5.98190 6.03781 6.05771 6.11847 6.19048 6.19200 6.23096 6.28719 6.30698 6.43107 6.47729 6.70627 6.82036 7.02581 7.04978 7.43700 7.65430 7.82354 8.09794 8.14126 8.22189 8.74724 8.99749 9.60908 10.18853 11.09916 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.004102 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.478831 B = 6823.651493 C = 7868.260792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.154 4.154 4 C -0.061 4.061 5 H 0.101 0.899 6 C 0.518 3.482 7 O -0.555 6.555 8 N -0.691 5.691 9 C 0.135 3.865 10 C 0.126 3.874 11 H 0.041 0.959 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.143 3.857 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.076 0.924 19 C 0.008 3.992 20 N -0.899 5.899 21 Si 0.890 3.110 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.288 1.288 25 C -0.114 4.114 26 C -0.069 4.069 27 C -0.179 4.179 28 C 0.090 3.910 29 N -0.490 5.490 30 C 0.135 3.865 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.029 0.971 47 H 0.255 0.745 48 H 0.133 0.867 49 H 0.132 0.868 50 H 0.151 0.849 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 -2.220 -8.557 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 C -0.211 4.211 4 C -0.084 4.084 5 H 0.119 0.881 6 C 0.303 3.697 7 O -0.435 6.435 8 N -0.342 5.342 9 C 0.010 3.990 10 C 0.019 3.981 11 H 0.059 0.941 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.018 3.982 16 N -0.317 5.317 17 C -0.382 4.382 18 H 0.093 0.907 19 C -0.191 4.191 20 N -0.543 5.543 21 Si 0.720 3.280 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.215 1.215 25 C -0.117 4.117 26 C -0.095 4.095 27 C -0.199 4.199 28 C -0.066 4.066 29 N -0.198 5.198 30 C -0.022 4.022 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.151 0.849 49 H 0.150 0.850 50 H 0.168 0.832 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.852 -3.142 -9.558 11.170 hybrid contribution -1.102 -0.115 1.951 2.244 sum -5.953 -3.257 -7.607 10.194 Atomic orbital electron populations 1.21836 0.94434 1.01865 1.02040 1.21028 0.96216 0.96276 0.96107 1.21952 1.01690 0.95029 1.02441 1.20324 0.93513 0.93178 1.01346 0.88119 1.20129 0.89115 0.81659 0.78757 1.90644 1.68390 1.37567 1.46858 1.46030 1.07776 1.29655 1.50714 1.21176 0.80607 0.99005 0.98166 1.21415 0.93721 0.95480 0.87518 0.94106 1.22865 0.94919 0.91419 0.93139 1.87800 1.80453 1.45558 1.17276 1.23350 0.99573 0.99603 0.81780 1.21428 0.87651 0.93028 0.96120 1.44118 1.53972 1.34173 0.99411 1.19315 1.14370 0.93206 1.11320 0.90671 1.25060 0.97731 0.95872 1.00446 1.69998 1.40239 1.19670 1.24409 0.86392 0.79254 0.82800 0.79568 1.20094 1.21408 1.21471 1.20378 0.98910 0.96000 0.96394 1.21552 0.95032 0.95666 0.97263 1.22058 1.02699 0.94869 1.00258 1.22721 0.93970 0.99858 0.90077 1.67743 1.10738 1.14192 1.27173 1.22701 0.94213 0.88232 0.97031 0.92275 0.92370 0.92705 0.90458 0.92259 0.91919 0.92024 0.74690 0.91446 0.92347 0.93520 0.89920 0.94121 0.90222 0.88847 0.95280 0.93521 0.84918 0.85038 0.83179 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.96 37.16 0.33 -1.14 16 2 C -0.08 -0.91 2.34 -90.62 -0.21 -1.12 16 3 C -0.15 -1.74 8.59 37.16 0.32 -1.42 16 4 C -0.06 -0.88 1.98 -92.92 -0.18 -1.06 16 5 H 0.10 1.42 7.91 -51.93 -0.41 1.01 16 6 C 0.52 8.93 5.90 -10.98 -0.06 8.86 16 7 O -0.56 -11.04 14.61 5.56 0.08 -10.96 16 8 N -0.69 -12.05 3.03 -60.29 -0.18 -12.23 16 9 C 0.13 2.38 4.44 -4.04 -0.02 2.36 16 10 C 0.13 2.35 3.20 -67.42 -0.22 2.13 16 11 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 12 C 0.06 0.96 6.29 37.31 0.23 1.19 16 13 O -0.39 -7.46 10.74 -35.23 -0.38 -7.84 16 14 C 0.03 0.66 6.99 37.31 0.26 0.92 16 15 C 0.14 3.17 5.40 -3.53 -0.02 3.15 16 16 N -0.59 -13.13 3.04 -164.30 -0.50 -13.62 16 17 C -0.25 -6.06 7.20 -15.06 -0.11 -6.17 16 18 H 0.08 1.86 5.71 -52.48 -0.30 1.56 16 19 C 0.01 0.21 5.01 -17.43 -0.09 0.12 16 20 N -0.90 -23.50 11.12 55.49 0.62 -22.88 16 21 Si 0.89 20.28 29.57 -169.99 -5.03 15.25 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.11 -1.70 3.52 -104.48 -0.37 -2.06 16 26 C -0.07 -0.96 9.81 -39.28 -0.39 -1.34 16 27 C -0.18 -2.23 10.11 -39.44 -0.40 -2.62 16 28 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 29 N -0.49 -7.61 10.36 -13.26 -0.14 -7.75 16 30 C 0.14 2.11 9.14 -17.55 -0.16 1.95 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.59 7.27 -51.93 -0.38 0.21 16 34 H 0.08 0.93 7.36 -51.93 -0.38 0.55 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.76 7.06 -51.93 -0.37 0.40 16 38 H 0.41 7.56 7.38 -40.82 -0.30 7.26 16 39 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.29 6.24 -51.93 -0.32 1.96 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 48 H 0.13 1.68 8.00 -52.48 -0.42 1.26 16 49 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 50 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 51 H 0.16 2.48 6.74 -52.49 -0.35 2.12 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -29.04 399.04 -9.04 -38.08 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -8.26 Total: 11.22 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.27 Total: 4.72 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.20 Total: -56.48 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.30 Total: -18.80 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.04 -9.04 -38.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484605289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.796 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds