Wall clock time and date at job start Wed Apr 1 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47529 * 2 1 4 4 C 1.53004 * 109.47088 * 120.00754 * 2 1 3 5 5 H 1.09002 * 109.46840 * 301.55247 * 4 2 1 6 6 C 1.50702 * 109.47010 * 181.55607 * 4 2 1 7 7 O 1.21275 * 119.99923 * 271.90701 * 6 4 2 8 8 N 1.34779 * 119.99752 * 91.90033 * 6 4 2 9 9 C 1.46503 * 119.99619 * 185.13935 * 8 6 4 10 10 C 1.53002 * 109.46936 * 180.02562 * 9 8 6 11 11 H 1.08990 * 109.67904 * 300.85066 * 10 9 8 12 12 C 1.53296 * 109.67900 * 180.33500 * 10 9 8 13 13 O 1.42961 * 109.21920 * 187.97978 * 12 10 9 14 14 C 1.42959 * 114.17313 * 62.58017 * 13 12 10 15 15 C 1.53299 * 109.21964 * 297.41858 * 14 13 12 16 16 N 1.47153 * 109.67894 * 61.41060 * 10 9 8 17 17 C 1.36933 * 120.98423 * 350.23154 * 16 10 9 18 18 H 1.08007 * 119.99976 * 29.05989 * 17 16 10 19 19 C 1.38814 * 120.00056 * 209.06040 * 17 16 10 20 20 N 1.31611 * 119.99861 * 13.27152 * 19 17 16 21 21 Si 1.86807 * 119.99856 * 193.27304 * 19 17 16 22 22 H 1.48499 * 109.46821 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47130 * 120.00015 * 21 19 17 24 24 H 1.48496 * 109.46803 * 239.99877 * 21 19 17 25 25 C 1.50700 * 109.47385 * 61.55252 * 4 2 1 26 26 C 1.38666 * 120.41673 * 239.99862 * 25 4 2 27 27 C 1.38633 * 118.41619 * 179.97438 * 26 25 4 28 28 C 1.38223 * 119.16512 * 0.02562 * 27 26 25 29 29 N 1.31857 * 120.76000 * 359.97438 * 28 27 26 30 30 C 1.31882 * 121.72911 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47052 * 299.99876 * 1 2 3 32 32 H 1.08997 * 109.47604 * 59.99099 * 1 2 3 33 33 H 1.09001 * 109.47464 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46634 * 240.00221 * 2 1 3 35 35 H 1.09003 * 109.47356 * 306.89553 * 3 2 1 36 36 H 1.09012 * 109.46772 * 66.88987 * 3 2 1 37 37 H 1.08997 * 109.47436 * 186.89047 * 3 2 1 38 38 H 0.97001 * 120.00471 * 5.14655 * 8 6 4 39 39 H 1.08999 * 109.47412 * 300.00295 * 9 8 6 40 40 H 1.08998 * 109.46928 * 60.00428 * 9 8 6 41 41 H 1.09001 * 109.51469 * 307.89751 * 12 10 9 42 42 H 1.08997 * 109.51317 * 68.00133 * 12 10 9 43 43 H 1.08999 * 109.51100 * 57.33801 * 14 13 12 44 44 H 1.08993 * 109.51564 * 177.49684 * 14 13 12 45 45 H 1.08999 * 109.67780 * 172.01889 * 15 14 13 46 46 H 1.08997 * 109.68136 * 292.57894 * 15 14 13 47 47 H 0.96999 * 119.99608 * 180.02562 * 20 19 17 48 48 H 1.08004 * 120.79482 * 0.02562 * 26 25 4 49 49 H 1.08006 * 120.41828 * 180.02562 * 27 26 25 50 50 H 1.07994 * 119.62061 * 179.72192 * 28 27 26 51 51 H 1.07997 * 119.61885 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6541 -0.2240 2.1390 6 6 3.5465 -0.6881 1.2686 7 8 4.1795 -1.5608 0.7133 8 7 4.1903 0.3117 1.9030 9 6 5.6502 0.4071 1.8272 10 6 6.1242 1.6213 2.6285 11 1 5.6691 2.5265 2.2268 12 6 7.6510 1.7305 2.5455 13 8 8.0993 2.7496 3.4423 14 6 7.8172 2.4840 4.8184 15 6 6.2988 2.4134 5.0177 16 7 5.7465 1.4607 4.0416 17 6 4.9054 0.4549 4.4365 18 1 4.8740 -0.4716 3.8824 19 6 4.0930 0.6262 5.5490 20 7 3.9312 1.8250 6.0675 21 14 3.2293 -0.8450 6.3102 22 1 3.5725 -2.0707 5.5452 23 1 3.6683 -1.0017 7.7201 24 1 1.7603 -0.6319 6.2699 25 6 1.5693 -2.1529 1.2300 26 6 0.7691 -2.6426 2.2510 27 6 0.3594 -3.9657 2.1914 28 6 0.7599 -4.7474 1.1241 29 7 1.5215 -4.2478 0.1706 30 6 1.9299 -2.9940 0.1946 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.5795 1.9907 -0.8219 36 1 1.7809 1.9194 0.9453 37 1 3.1230 1.4449 -0.1233 38 1 3.6870 0.9681 2.4098 39 1 6.0955 -0.4975 2.2415 40 1 5.9535 0.5174 0.7862 41 1 8.0999 0.7772 2.8242 42 1 7.9429 1.9865 1.5270 43 1 8.2666 1.5333 5.1053 44 1 8.2285 3.2829 5.4352 45 1 6.0768 2.0728 6.0290 46 1 5.8613 3.3987 4.8571 47 1 3.3639 1.9446 6.8451 48 1 0.4712 -2.0082 3.0728 49 1 -0.2647 -4.3805 2.9691 50 1 0.4488 -5.7802 1.0725 51 1 2.5526 -2.6202 -0.6047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484605289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:49 Heat of formation + Delta-G solvation = -44.216000 kcal Electronic energy + Delta-G solvation = -32674.851310 eV Core-core repulsion = 28574.087181 eV Total energy + Delta-G solvation = -4100.764130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81369 -40.57430 -39.85485 -37.28766 -36.83720 -35.32205 -33.51936 -33.25539 -32.37622 -32.14206 -29.21748 -28.72941 -27.92975 -26.62461 -25.23986 -24.59677 -23.70167 -23.18464 -21.82415 -21.42089 -20.69352 -18.81135 -18.13848 -17.95765 -17.61851 -17.28660 -16.87033 -16.70656 -16.30843 -16.21687 -16.00489 -15.62500 -15.51975 -15.21572 -15.04199 -14.80258 -14.48012 -14.34192 -14.24245 -14.00847 -13.65335 -13.56702 -13.42533 -13.12349 -13.02898 -12.93397 -12.87052 -12.73665 -12.48781 -12.14785 -12.10424 -12.00568 -11.84659 -11.81998 -11.70395 -11.30629 -10.98777 -10.74815 -10.57557 -10.48410 -10.40546 -9.88486 -9.81739 -8.64827 -7.87237 -5.35193 0.14837 0.32540 1.36413 1.44583 1.51197 1.71081 2.31795 2.45104 2.89316 3.03161 3.28329 3.40796 3.44451 3.66946 3.70987 3.86581 3.99402 4.04248 4.08961 4.10519 4.19415 4.22709 4.32770 4.37405 4.46923 4.48189 4.59030 4.63849 4.64040 4.65710 4.70068 4.75304 4.81008 4.88694 4.97469 4.99308 5.01735 5.11812 5.16055 5.17550 5.29947 5.31101 5.38529 5.41532 5.58198 5.64697 5.69939 5.77454 6.28827 6.36454 6.71128 7.02688 7.10650 7.34132 7.77137 8.32283 9.17369 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.004102 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.478831 B = 6823.651493 C = 7868.260792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.150 4.150 4 C -0.055 4.055 5 H 0.101 0.899 6 C 0.518 3.482 7 O -0.584 6.584 8 N -0.691 5.691 9 C 0.142 3.858 10 C 0.128 3.872 11 H 0.041 0.959 12 C 0.056 3.944 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.149 3.851 16 N -0.604 5.604 17 C -0.238 4.238 18 H 0.067 0.933 19 C -0.031 4.031 20 N -0.924 5.924 21 Si 0.938 3.062 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.280 1.280 25 C -0.124 4.124 26 C -0.083 4.083 27 C -0.172 4.172 28 C 0.085 3.915 29 N -0.514 5.514 30 C 0.120 3.880 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.412 0.588 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.118 0.882 43 H 0.041 0.959 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.008 0.992 47 H 0.250 0.750 48 H 0.143 0.857 49 H 0.165 0.835 50 H 0.183 0.817 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -2.534 -9.158 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.207 4.207 4 C -0.077 4.077 5 H 0.120 0.880 6 C 0.304 3.696 7 O -0.465 6.465 8 N -0.341 5.341 9 C 0.017 3.983 10 C 0.021 3.979 11 H 0.059 0.941 12 C -0.022 4.022 13 O -0.315 6.315 14 C -0.032 4.032 15 C 0.023 3.977 16 N -0.330 5.330 17 C -0.368 4.368 18 H 0.085 0.915 19 C -0.228 4.228 20 N -0.570 5.570 21 Si 0.767 3.233 22 H -0.209 1.209 23 H -0.224 1.224 24 H -0.207 1.207 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.191 4.191 28 C -0.072 4.072 29 N -0.223 5.223 30 C -0.037 4.037 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.136 0.864 43 H 0.060 0.940 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.027 0.973 47 H 0.059 0.941 48 H 0.161 0.839 49 H 0.182 0.818 50 H 0.199 0.801 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.479 -3.448 -10.181 12.065 hybrid contribution -0.880 -0.070 2.099 2.277 sum -6.359 -3.518 -8.082 10.868 Atomic orbital electron populations 1.21779 0.92899 1.01762 1.03052 1.21011 0.97364 0.96090 0.94570 1.21922 1.00906 0.94852 1.03052 1.20333 0.91151 0.93625 1.02613 0.88035 1.20626 0.90364 0.80779 0.77793 1.90627 1.69342 1.38498 1.48033 1.46038 1.07689 1.29685 1.50684 1.21098 0.80757 0.97379 0.99026 1.21533 0.95035 0.95742 0.85544 0.94142 1.22995 0.93321 0.91279 0.94616 1.87804 1.80290 1.46207 1.17230 1.23217 0.96889 1.00690 0.82419 1.21248 0.89942 0.91674 0.94810 1.44308 1.53856 1.33737 1.01123 1.19299 1.13615 0.93214 1.10652 0.91498 1.25489 0.98861 0.97205 1.01221 1.70105 1.41299 1.20808 1.24800 0.85659 0.78943 0.80539 0.78113 1.20862 1.22394 1.20651 1.20419 0.99544 0.96014 0.96710 1.21829 0.95085 0.96714 0.97244 1.22429 1.02028 0.94100 1.00584 1.23297 0.93022 1.01333 0.89521 1.67723 1.11767 1.14216 1.28553 1.22581 0.94950 0.88776 0.97350 0.91867 0.90722 0.93337 0.90958 0.90329 0.92236 0.93384 0.75112 0.93733 0.90125 0.93582 0.86433 0.94048 0.87781 0.91528 0.97348 0.94061 0.83916 0.81786 0.80052 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.96 71.98 0.65 -1.97 16 2 C -0.07 -1.63 2.34 -10.79 -0.03 -1.65 16 3 C -0.15 -3.24 8.59 71.98 0.62 -2.62 16 4 C -0.06 -1.56 1.98 -12.28 -0.02 -1.59 16 5 H 0.10 2.83 7.91 -2.39 -0.02 2.81 16 6 C 0.52 17.93 5.90 87.66 0.52 18.44 16 7 O -0.58 -23.55 14.61 -3.01 -0.04 -23.59 16 8 N -0.69 -24.13 3.03 -463.05 -1.40 -25.53 16 9 C 0.14 4.93 4.44 86.38 0.38 5.31 16 10 C 0.13 4.66 3.20 44.97 0.14 4.80 16 11 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 12 C 0.06 1.83 6.29 72.08 0.45 2.28 16 13 O -0.40 -14.27 10.74 -148.98 -1.60 -15.87 16 14 C 0.05 1.67 6.99 72.08 0.50 2.17 16 15 C 0.15 6.61 5.40 86.35 0.47 7.08 16 16 N -0.60 -26.84 3.04 -673.72 -2.05 -28.89 16 17 C -0.24 -11.46 7.20 84.03 0.60 -10.86 16 18 H 0.07 3.34 5.71 -2.91 -0.02 3.32 16 19 C -0.03 -1.57 5.01 84.86 0.43 -1.14 16 20 N -0.92 -48.99 11.12 21.65 0.24 -48.75 16 21 Si 0.94 41.90 29.57 68.60 2.03 43.93 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.12 -3.64 3.52 -19.77 -0.07 -3.71 16 26 C -0.08 -2.18 9.81 22.47 0.22 -1.96 16 27 C -0.17 -3.87 10.11 22.36 0.23 -3.64 16 28 C 0.08 2.05 11.18 84.69 0.95 3.00 16 29 N -0.51 -15.67 10.36 -195.85 -2.03 -17.70 16 30 C 0.12 3.76 9.14 84.67 0.77 4.53 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.05 0.99 7.27 -2.39 -0.02 0.97 16 34 H 0.07 1.73 7.36 -2.39 -0.02 1.71 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.05 1.16 7.06 -2.39 -0.02 1.14 16 38 H 0.41 15.06 7.38 -92.71 -0.68 14.38 16 39 H 0.04 1.76 7.53 -2.39 -0.02 1.75 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.10 3.27 8.14 -2.39 -0.02 3.26 16 45 H 0.07 3.32 6.24 -2.39 -0.01 3.31 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 48 H 0.14 3.38 8.00 -2.91 -0.02 3.36 16 49 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 50 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 51 H 0.15 4.77 6.74 -2.91 -0.02 4.75 16 Total: -1.00 -62.74 399.04 2.20 -60.54 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.24 Total: 37.38 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 6.81 Total: 18.49 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -5.24 Total: -120.87 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.64 Total: -39.46 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -62.74 2.20 -60.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484605289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.323 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds