Wall clock time and date at job start Wed Apr 1 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99742 * 2 1 4 4 N 1.34770 * 120.00329 * 179.97438 * 2 1 3 5 5 C 1.39445 * 120.00330 * 185.28080 * 4 2 1 6 6 C 1.39126 * 119.92295 * 33.53551 * 5 4 2 7 7 C 1.37668 * 120.07429 * 180.02562 * 6 5 4 8 8 C 1.39756 * 119.92230 * 359.97438 * 7 6 5 9 9 C 1.47603 * 120.07082 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99926 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99803 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47248 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47316 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.46653 * 304.99825 * 14 13 12 16 16 N 1.46501 * 109.47396 * 64.99190 * 14 13 12 17 17 C 1.36929 * 120.00488 * 204.72318 * 16 14 13 18 18 H 1.07998 * 120.00132 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00357 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00009 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99957 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47058 * 89.99721 * 21 19 17 23 23 H 1.48495 * 109.47034 * 210.00042 * 21 19 17 24 24 H 1.48503 * 109.46764 * 329.99505 * 21 19 17 25 25 C 1.52992 * 109.47438 * 184.99642 * 14 13 12 26 26 C 1.52999 * 109.47024 * 59.99915 * 25 14 13 27 27 C 1.53003 * 109.47386 * 179.97438 * 25 14 13 28 28 C 1.39746 * 119.85156 * 0.25471 * 8 7 6 29 29 C 1.37665 * 119.92617 * 359.50991 * 28 8 7 30 30 H 1.08994 * 109.47318 * 239.99991 * 1 2 3 31 31 H 1.08994 * 109.47494 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46787 * 120.00145 * 1 2 3 33 33 H 0.97006 * 119.99762 * 5.28052 * 4 2 1 34 34 H 1.08003 * 119.96641 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.04179 * 179.97438 * 7 6 5 36 36 H 0.97002 * 120.00382 * 0.02562 * 11 9 8 37 37 H 1.08997 * 109.46983 * 60.00056 * 12 11 9 38 38 H 1.09003 * 109.47131 * 300.00192 * 12 11 9 39 39 H 1.08997 * 109.47452 * 59.99299 * 13 12 11 40 40 H 1.09003 * 109.46779 * 299.99878 * 13 12 11 41 41 H 0.97008 * 119.99547 * 25.00255 * 16 14 13 42 42 H 0.97008 * 119.99923 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.47348 * 299.99758 * 25 14 13 44 44 H 1.08997 * 109.47233 * 60.00178 * 26 25 14 45 45 H 1.09005 * 109.46956 * 180.02562 * 26 25 14 46 46 H 1.09006 * 109.47089 * 299.99596 * 26 25 14 47 47 H 1.09004 * 109.46802 * 60.00324 * 27 25 14 48 48 H 1.08997 * 109.47039 * 179.97438 * 27 25 14 49 49 H 1.08997 * 109.47169 * 300.00004 * 27 25 14 50 50 H 1.08003 * 120.03356 * 179.72323 * 28 8 7 51 51 H 1.08003 * 119.96113 * 180.21258 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5709 -1.1696 0.1117 6 6 4.2078 -0.1972 0.8761 7 6 5.5800 -0.1964 0.9876 8 6 6.3332 -1.1743 0.3321 9 6 7.8046 -1.1762 0.4489 10 8 8.3625 -0.3268 1.1162 11 7 8.5294 -2.1202 -0.1834 12 6 9.9898 -2.1225 -0.0671 13 6 10.5640 -3.2883 -0.8747 14 6 12.0890 -3.2911 -0.7527 15 1 12.4794 -2.3192 -1.0547 16 7 12.4673 -3.5588 0.6371 17 6 13.6779 -3.1298 1.1120 18 1 14.3537 -2.5937 0.4622 19 6 14.0365 -3.3838 2.4287 20 7 15.1999 -2.9710 2.8853 21 14 12.8680 -4.3117 3.5526 22 1 13.1419 -5.7681 3.4578 23 1 13.0661 -3.8608 4.9535 24 1 11.4669 -4.0436 3.1399 25 6 12.6711 -4.3783 -1.6581 26 6 12.2761 -4.0987 -3.1096 27 6 14.1963 -4.3807 -1.5366 28 6 5.6905 -2.1467 -0.4388 29 6 4.3177 -2.1446 -0.5421 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6990 -2.0055 -0.0764 34 1 3.6251 0.5580 1.3827 35 1 6.0738 0.5589 1.5808 36 1 8.0842 -2.7981 -0.7155 37 1 10.2706 -2.2324 0.9803 38 1 10.3865 -1.1834 -0.4530 39 1 10.2830 -3.1781 -1.9221 40 1 10.1673 -4.2276 -0.4891 41 1 11.8619 -4.0435 1.2198 42 1 15.4507 -3.1489 3.8053 43 1 12.2808 -5.3502 -1.3561 44 1 12.6665 -3.1269 -3.4116 45 1 12.6905 -4.8736 -3.7546 46 1 11.1896 -4.0969 -3.1965 47 1 14.4781 -4.5797 -0.5026 48 1 14.6110 -5.1556 -2.1813 49 1 14.5864 -3.4088 -1.8389 50 1 6.2700 -2.9011 -0.9502 51 1 3.8203 -2.8979 -1.1350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485792074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:25 Heat of formation + Delta-G solvation = -42.742926 kcal Electronic energy + Delta-G solvation = -29670.040942 eV Core-core repulsion = 25569.340689 eV Total energy + Delta-G solvation = -4100.700252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05811 -39.89271 -38.30459 -37.53012 -35.22893 -34.81955 -33.05695 -31.84304 -31.29472 -31.07522 -30.04642 -28.97665 -26.39914 -25.54558 -23.94836 -23.19369 -22.41531 -21.26011 -21.12969 -20.44047 -19.40745 -18.50111 -17.74665 -17.48102 -17.32203 -16.20555 -15.80366 -15.53698 -15.11846 -14.91970 -14.67763 -14.60094 -14.04710 -14.00210 -13.86182 -13.81019 -13.59100 -13.38990 -13.25141 -13.04808 -12.80835 -12.64791 -12.50339 -12.27601 -11.88003 -11.63832 -11.58747 -11.34511 -11.02000 -10.84616 -10.83427 -10.70827 -10.45434 -10.41930 -10.23440 -10.09421 -9.97660 -9.74893 -9.39688 -9.33099 -8.95602 -8.82560 -8.51960 -7.21781 -5.72211 -3.06800 0.50632 1.05788 1.97797 2.49150 2.84349 3.22672 3.41087 3.44067 3.49879 3.68909 4.11316 4.44439 4.53261 4.62618 4.63535 4.68224 4.73076 4.97831 5.04278 5.12625 5.13680 5.16075 5.27295 5.41425 5.49684 5.60673 5.64516 5.65447 5.72552 5.81147 5.85325 5.91437 6.02673 6.04045 6.12277 6.16029 6.23937 6.32945 6.38826 6.48301 6.53799 6.57800 6.64761 6.67323 6.78953 6.79101 7.06537 7.38583 7.52725 7.56928 8.04343 8.29424 8.46432 9.24885 9.97492 10.16735 11.45843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002014 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.948610 B =13901.972265 C =14994.356345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.519 6.519 4 N -0.675 5.675 5 C 0.165 3.835 6 C -0.130 4.130 7 C -0.039 4.039 8 C -0.145 4.145 9 C 0.552 3.448 10 O -0.532 6.532 11 N -0.725 5.725 12 C 0.121 3.879 13 C -0.139 4.139 14 C 0.190 3.810 15 H 0.058 0.942 16 N -0.746 5.746 17 C -0.236 4.236 18 H 0.094 0.906 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.880 3.120 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.277 1.277 25 C -0.110 4.110 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.066 4.066 29 C -0.154 4.154 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.413 0.587 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.395 0.605 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.360 0.640 42 H 0.258 0.742 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.029 0.971 49 H 0.043 0.957 50 H 0.131 0.869 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.873 -1.806 -11.187 32.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.393 6.393 4 N -0.321 5.321 5 C 0.070 3.930 6 C -0.150 4.150 7 C -0.058 4.058 8 C -0.148 4.148 9 C 0.339 3.661 10 O -0.410 6.410 11 N -0.377 5.377 12 C -0.002 4.002 13 C -0.178 4.178 14 C 0.080 3.920 15 H 0.076 0.924 16 N -0.388 5.388 17 C -0.365 4.365 18 H 0.111 0.889 19 C -0.192 4.192 20 N -0.581 5.581 21 Si 0.711 3.289 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.204 1.204 25 C -0.132 4.132 26 C -0.205 4.205 27 C -0.198 4.198 28 C -0.085 4.085 29 C -0.175 4.175 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.229 0.771 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.193 0.807 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.048 0.952 49 H 0.062 0.938 50 H 0.149 0.851 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.850 -0.273 -10.644 31.692 hybrid contribution -1.223 -1.609 0.545 2.093 sum -31.074 -1.882 -10.100 32.728 Atomic orbital electron populations 1.21937 0.90407 1.06229 1.04683 1.21090 0.91042 0.83080 0.75109 1.90790 1.70580 1.31153 1.46820 1.43571 1.05299 1.10183 1.73052 1.17908 0.82774 0.96754 0.95548 1.21099 0.94566 0.99934 0.99445 1.21206 0.92698 0.96311 0.95615 1.20050 0.93407 0.98678 1.02714 1.18177 0.86564 0.81647 0.79695 1.90821 1.72486 1.37585 1.40068 1.46030 1.08466 1.31330 1.51827 1.21484 0.77018 0.99280 1.02419 1.22181 0.98293 0.97628 0.99695 1.20165 0.89611 0.96663 0.85554 0.92376 1.42818 1.19899 1.68635 1.07491 1.19047 0.92645 1.29499 0.95337 0.88855 1.24656 0.96652 1.00948 0.96906 1.69693 1.20996 1.51412 1.15996 0.86610 0.81159 0.79954 0.81157 1.21339 1.21918 1.20360 1.21741 0.97404 1.00062 0.93955 1.21934 1.00267 1.01051 0.97205 1.21841 0.94381 0.99681 1.03908 1.21089 0.93985 0.97011 0.96460 1.20766 0.93814 1.00956 1.01933 0.88856 0.88400 0.88990 0.75080 0.84306 0.84111 0.77064 0.90130 0.91279 0.91018 0.91787 0.80740 0.93158 0.92338 0.93070 0.93691 0.93276 0.89261 0.95220 0.93818 0.85110 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.41 10.32 36.01 0.37 -0.03 16 2 C 0.51 3.51 7.67 -10.99 -0.08 3.42 16 3 O -0.52 -6.11 14.76 5.56 0.08 -6.03 16 4 N -0.68 -3.74 5.32 -9.86 -0.05 -3.80 16 5 C 0.16 1.42 6.27 -83.74 -0.53 0.90 16 6 C -0.13 -1.42 8.62 -39.46 -0.34 -1.76 16 7 C -0.04 -0.48 9.58 -39.22 -0.38 -0.85 16 8 C -0.14 -1.76 5.88 -104.95 -0.62 -2.37 16 9 C 0.55 8.42 7.76 -12.44 -0.10 8.32 16 10 O -0.53 -10.51 16.34 5.30 0.09 -10.42 16 11 N -0.72 -9.48 5.51 -61.32 -0.34 -9.82 16 12 C 0.12 1.91 5.56 -4.04 -0.02 1.88 16 13 C -0.14 -1.95 4.65 -26.73 -0.12 -2.07 16 14 C 0.19 3.37 2.02 -67.94 -0.14 3.24 16 15 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.75 -16.58 4.26 -53.43 -0.23 -16.81 16 17 C -0.24 -6.33 8.04 -15.06 -0.12 -6.45 16 18 H 0.09 2.70 7.60 -52.49 -0.40 2.30 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 21 Si 0.88 22.23 27.73 -169.99 -4.71 17.52 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 25 C -0.11 -1.79 2.69 -90.62 -0.24 -2.03 16 26 C -0.15 -1.90 8.85 37.16 0.33 -1.57 16 27 C -0.14 -2.59 8.25 37.16 0.31 -2.28 16 28 C -0.07 -0.58 9.53 -39.23 -0.37 -0.95 16 29 C -0.15 -1.14 9.94 -39.46 -0.39 -1.53 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.10 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.41 0.71 8.82 -40.82 -0.36 0.35 16 34 H 0.14 1.57 6.41 -52.48 -0.34 1.23 16 35 H 0.14 1.81 7.64 -52.49 -0.40 1.41 16 36 H 0.39 3.71 6.49 -40.82 -0.27 3.44 16 37 H 0.08 1.56 7.75 -51.93 -0.40 1.16 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.55 6.32 -51.93 -0.33 0.22 16 47 H 0.09 1.98 5.99 -51.93 -0.31 1.67 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.13 0.80 6.39 -52.48 -0.34 0.47 16 51 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -36.84 410.88 -8.67 -45.51 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.93 Total: 10.14 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.54 Total: -4.13 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.16 Total: -58.78 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.17 Total: -16.45 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.84 -8.67 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485792074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.765 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds