Wall clock time and date at job start Wed Apr 1 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99742 * 2 1 4 4 N 1.34770 * 120.00329 * 179.97438 * 2 1 3 5 5 C 1.39445 * 120.00330 * 185.28080 * 4 2 1 6 6 C 1.39126 * 119.92295 * 33.53551 * 5 4 2 7 7 C 1.37668 * 120.07429 * 180.02562 * 6 5 4 8 8 C 1.39756 * 119.92230 * 359.97438 * 7 6 5 9 9 C 1.47603 * 120.07082 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99926 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99803 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47248 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47316 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.46653 * 304.99825 * 14 13 12 16 16 N 1.46501 * 109.47396 * 64.99190 * 14 13 12 17 17 C 1.36929 * 120.00488 * 204.72318 * 16 14 13 18 18 H 1.07998 * 120.00132 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00357 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00009 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99957 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47058 * 89.99721 * 21 19 17 23 23 H 1.48495 * 109.47034 * 210.00042 * 21 19 17 24 24 H 1.48503 * 109.46764 * 329.99505 * 21 19 17 25 25 C 1.52992 * 109.47438 * 184.99642 * 14 13 12 26 26 C 1.52999 * 109.47024 * 59.99915 * 25 14 13 27 27 C 1.53003 * 109.47386 * 179.97438 * 25 14 13 28 28 C 1.39746 * 119.85156 * 0.25471 * 8 7 6 29 29 C 1.37665 * 119.92617 * 359.50991 * 28 8 7 30 30 H 1.08994 * 109.47318 * 239.99991 * 1 2 3 31 31 H 1.08994 * 109.47494 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46787 * 120.00145 * 1 2 3 33 33 H 0.97006 * 119.99762 * 5.28052 * 4 2 1 34 34 H 1.08003 * 119.96641 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.04179 * 179.97438 * 7 6 5 36 36 H 0.97002 * 120.00382 * 0.02562 * 11 9 8 37 37 H 1.08997 * 109.46983 * 60.00056 * 12 11 9 38 38 H 1.09003 * 109.47131 * 300.00192 * 12 11 9 39 39 H 1.08997 * 109.47452 * 59.99299 * 13 12 11 40 40 H 1.09003 * 109.46779 * 299.99878 * 13 12 11 41 41 H 0.97008 * 119.99547 * 25.00255 * 16 14 13 42 42 H 0.97008 * 119.99923 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.47348 * 299.99758 * 25 14 13 44 44 H 1.08997 * 109.47233 * 60.00178 * 26 25 14 45 45 H 1.09005 * 109.46956 * 180.02562 * 26 25 14 46 46 H 1.09006 * 109.47089 * 299.99596 * 26 25 14 47 47 H 1.09004 * 109.46802 * 60.00324 * 27 25 14 48 48 H 1.08997 * 109.47039 * 179.97438 * 27 25 14 49 49 H 1.08997 * 109.47169 * 300.00004 * 27 25 14 50 50 H 1.08003 * 120.03356 * 179.72323 * 28 8 7 51 51 H 1.08003 * 119.96113 * 180.21258 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5709 -1.1696 0.1117 6 6 4.2078 -0.1972 0.8761 7 6 5.5800 -0.1964 0.9876 8 6 6.3332 -1.1743 0.3321 9 6 7.8046 -1.1762 0.4489 10 8 8.3625 -0.3268 1.1162 11 7 8.5294 -2.1202 -0.1834 12 6 9.9898 -2.1225 -0.0671 13 6 10.5640 -3.2883 -0.8747 14 6 12.0890 -3.2911 -0.7527 15 1 12.4794 -2.3192 -1.0547 16 7 12.4673 -3.5588 0.6371 17 6 13.6779 -3.1298 1.1120 18 1 14.3537 -2.5937 0.4622 19 6 14.0365 -3.3838 2.4287 20 7 15.1999 -2.9710 2.8853 21 14 12.8680 -4.3117 3.5526 22 1 13.1419 -5.7681 3.4578 23 1 13.0661 -3.8608 4.9535 24 1 11.4669 -4.0436 3.1399 25 6 12.6711 -4.3783 -1.6581 26 6 12.2761 -4.0987 -3.1096 27 6 14.1963 -4.3807 -1.5366 28 6 5.6905 -2.1467 -0.4388 29 6 4.3177 -2.1446 -0.5421 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6990 -2.0055 -0.0764 34 1 3.6251 0.5580 1.3827 35 1 6.0738 0.5589 1.5808 36 1 8.0842 -2.7981 -0.7155 37 1 10.2706 -2.2324 0.9803 38 1 10.3865 -1.1834 -0.4530 39 1 10.2830 -3.1781 -1.9221 40 1 10.1673 -4.2276 -0.4891 41 1 11.8619 -4.0435 1.2198 42 1 15.4507 -3.1489 3.8053 43 1 12.2808 -5.3502 -1.3561 44 1 12.6665 -3.1269 -3.4116 45 1 12.6905 -4.8736 -3.7546 46 1 11.1896 -4.0969 -3.1965 47 1 14.4781 -4.5797 -0.5026 48 1 14.6110 -5.1556 -2.1813 49 1 14.5864 -3.4088 -1.8389 50 1 6.2700 -2.9011 -0.9502 51 1 3.8203 -2.8979 -1.1350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485792074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:24 Heat of formation + Delta-G solvation = -70.422692 kcal Electronic energy + Delta-G solvation = -29671.241226 eV Core-core repulsion = 25569.340689 eV Total energy + Delta-G solvation = -4101.900537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.74383 -40.90280 -39.29104 -38.85706 -36.13027 -35.90752 -34.91932 -33.08946 -32.33485 -31.97878 -31.30890 -29.67764 -27.68683 -26.99749 -24.92156 -24.36916 -23.72100 -22.50533 -21.98993 -21.34081 -20.90353 -19.49001 -19.18346 -18.49628 -18.02202 -17.16849 -17.06102 -16.54326 -16.39041 -16.01554 -15.89149 -15.44394 -15.38807 -15.14775 -15.07350 -14.86730 -14.67439 -14.54483 -14.27347 -13.94749 -13.81728 -13.71333 -13.37820 -13.28387 -13.02215 -12.94894 -12.91288 -12.67247 -12.48430 -12.33878 -12.21482 -12.00755 -11.85473 -11.71926 -11.53651 -11.42526 -11.27279 -11.14837 -10.96568 -10.79963 -10.18533 -10.07292 -9.24893 -9.20258 -7.95602 -5.25417 -0.31363 0.32785 1.35894 1.39215 1.40284 1.45953 1.87341 2.04892 2.11531 2.51636 2.82098 3.35707 3.65197 3.65964 3.73636 3.81623 3.91350 3.92431 4.13433 4.23645 4.24801 4.33617 4.39742 4.44807 4.48247 4.55357 4.66822 4.67725 4.78939 4.80514 4.93502 4.97140 5.00656 5.05593 5.09688 5.13949 5.18231 5.21804 5.26546 5.29053 5.35103 5.38036 5.42216 5.46029 5.70094 5.79343 5.85261 5.88668 6.28397 6.37566 6.53354 7.08198 7.15824 7.20197 7.92863 8.09918 9.26229 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002014 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.948610 B =13901.972265 C =14994.356345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.576 6.576 4 N -0.659 5.659 5 C 0.170 3.830 6 C -0.147 4.147 7 C -0.059 4.059 8 C -0.167 4.167 9 C 0.548 3.452 10 O -0.593 6.593 11 N -0.705 5.705 12 C 0.127 3.873 13 C -0.122 4.122 14 C 0.181 3.819 15 H 0.038 0.962 16 N -0.748 5.748 17 C -0.199 4.199 18 H 0.061 0.939 19 C -0.072 4.072 20 N -0.988 5.988 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.307 1.307 24 H -0.257 1.257 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.053 4.053 29 C -0.139 4.139 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.435 0.565 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.418 0.582 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.363 0.637 42 H 0.252 0.748 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.051 0.949 49 H 0.030 0.970 50 H 0.166 0.834 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.651 -5.440 -14.436 38.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.455 6.455 4 N -0.307 5.307 5 C 0.073 3.927 6 C -0.167 4.167 7 C -0.078 4.078 8 C -0.171 4.171 9 C 0.337 3.663 10 O -0.474 6.474 11 N -0.357 5.357 12 C 0.003 3.997 13 C -0.160 4.160 14 C 0.072 3.928 15 H 0.056 0.944 16 N -0.391 5.391 17 C -0.331 4.331 18 H 0.079 0.921 19 C -0.262 4.262 20 N -0.640 5.640 21 Si 0.775 3.225 22 H -0.203 1.203 23 H -0.235 1.235 24 H -0.182 1.182 25 C -0.124 4.124 26 C -0.197 4.197 27 C -0.196 4.196 28 C -0.072 4.072 29 C -0.159 4.159 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.276 0.724 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.257 0.743 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.196 0.804 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.184 0.816 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -34.733 -4.001 -13.985 37.656 hybrid contribution 0.199 -0.424 1.418 1.493 sum -34.534 -4.425 -12.567 37.015 Atomic orbital electron populations 1.21969 0.86503 1.06566 1.07172 1.22012 0.92843 0.82373 0.73433 1.90781 1.71984 1.33268 1.49453 1.43541 1.04086 1.11133 1.71904 1.18099 0.84423 0.95911 0.94225 1.21012 0.93866 1.00990 1.00839 1.21082 0.93550 0.96662 0.96545 1.19844 0.91314 1.00638 1.05265 1.18747 0.88000 0.80897 0.78650 1.90789 1.73842 1.40020 1.42790 1.45739 1.07179 1.31346 1.51449 1.21208 0.78754 0.99455 1.00266 1.22060 0.94689 0.97463 1.01819 1.20446 0.92661 0.96370 0.83282 0.94404 1.42847 1.18166 1.68379 1.09691 1.18967 0.93301 1.26423 0.94392 0.92063 1.25393 0.98484 1.03478 0.98883 1.69875 1.23511 1.54524 1.16064 0.85536 0.80032 0.78832 0.78139 1.20340 1.23486 1.18191 1.21616 0.95216 0.99497 0.96098 1.21864 1.02250 1.01358 0.94238 1.21765 0.96767 0.99703 1.01339 1.21448 0.94941 0.96003 0.94780 1.21211 0.93140 1.00771 1.00814 0.86430 0.89257 0.86074 0.72384 0.85740 0.86704 0.74350 0.94176 0.93220 0.86969 0.89661 0.80414 0.93876 0.91437 0.93422 0.92261 0.90344 0.93777 0.92987 0.95031 0.81627 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.26 10.32 71.24 0.74 0.48 16 2 C 0.50 5.99 7.67 87.66 0.67 6.66 16 3 O -0.58 -13.70 14.76 -3.04 -0.04 -13.75 16 4 N -0.66 -5.15 5.32 -303.50 -1.61 -6.77 16 5 C 0.17 2.50 6.27 38.36 0.24 2.74 16 6 C -0.15 -3.27 8.62 22.35 0.19 -3.08 16 7 C -0.06 -1.53 9.58 22.50 0.22 -1.32 16 8 C -0.17 -3.95 5.88 -20.07 -0.12 -4.07 16 9 C 0.55 16.83 7.76 86.72 0.67 17.51 16 10 O -0.59 -24.96 16.34 -3.97 -0.06 -25.02 16 11 N -0.70 -17.04 5.51 -466.20 -2.57 -19.60 16 12 C 0.13 3.91 5.56 86.38 0.48 4.39 16 13 C -0.12 -2.98 4.65 30.59 0.14 -2.84 16 14 C 0.18 6.17 2.02 44.99 0.09 6.26 16 15 H 0.04 1.45 8.08 -2.39 -0.02 1.44 16 16 N -0.75 -33.21 4.26 -322.96 -1.38 -34.59 16 17 C -0.20 -11.13 8.04 84.04 0.68 -10.45 16 18 H 0.06 3.76 7.60 -2.91 -0.02 3.74 16 19 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.99 -64.86 13.97 21.65 0.30 -64.55 16 21 Si 0.95 47.16 27.73 68.60 1.90 49.06 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16 24 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 25 C -0.10 -3.08 2.69 -10.80 -0.03 -3.11 16 26 C -0.14 -2.99 8.85 71.98 0.64 -2.35 16 27 C -0.14 -5.04 8.25 71.98 0.59 -4.44 16 28 C -0.05 -0.71 9.53 22.50 0.21 -0.50 16 29 C -0.14 -1.38 9.94 22.35 0.22 -1.16 16 30 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.09 0.36 8.12 -2.39 -0.02 0.34 16 32 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.44 -0.61 8.82 -92.70 -0.82 -1.43 16 34 H 0.12 3.07 6.41 -2.91 -0.02 3.05 16 35 H 0.11 3.44 7.64 -2.91 -0.02 3.42 16 36 H 0.42 5.98 6.49 -92.71 -0.60 5.38 16 37 H 0.04 1.57 7.75 -2.39 -0.02 1.55 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.11 1.92 6.17 -2.39 -0.01 1.90 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.36 15.75 5.66 -92.70 -0.52 15.22 16 42 H 0.25 16.00 8.31 -92.70 -0.77 15.23 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.08 1.25 6.32 -2.38 -0.02 1.23 16 47 H 0.04 1.99 5.99 -2.38 -0.01 1.98 16 48 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.17 1.01 6.39 -2.91 -0.02 0.99 16 51 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 Total: -1.00 -91.20 410.88 1.61 -89.59 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.03 Total: 24.78 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.11 Total: 0.86 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.25 Total: -125.52 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.11 Total: -38.77 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.90 Total: 49.06 kcal Total: -91.20 1.61 -89.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485792074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.166 kcal (2) G-P(sol) polarization free energy of solvation -91.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds