Wall clock time and date at job start Wed Apr 1 2020 04:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47177 * 240.00028 * 2 1 3 5 5 C 1.47196 * 109.46907 * 120.00021 * 2 1 3 6 6 C 2.64603 * 109.46937 * 119.99984 * 2 1 3 7 7 C 4.07805 * 109.47002 * 119.99865 * 2 1 3 8 8 O 1.21608 * 119.99715 * 118.26198 * 7 6 5 9 9 N 1.34772 * 119.99825 * 298.25386 * 7 6 5 10 10 C 1.46502 * 119.99664 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.29828 * 118.55677 * 94.99664 * 11 10 9 13 13 C 1.50140 * 123.28739 * 180.34547 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.97963 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50310 * 118.55265 * 275.01870 * 11 10 9 29 29 H 1.09000 * 109.47709 * 299.99646 * 1 2 3 30 30 H 1.09002 * 109.47509 * 60.00146 * 1 2 3 31 31 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46846 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47263 * 300.00051 * 3 2 1 34 34 H 1.09007 * 109.47245 * 59.99964 * 3 2 1 35 35 H 1.09002 * 109.47068 * 300.00157 * 4 2 1 36 36 H 1.08999 * 109.47417 * 60.00206 * 4 2 1 37 37 H 1.09000 * 109.47248 * 180.02562 * 4 2 1 38 38 H 0.97002 * 120.00754 * 0.02562 * 9 7 6 39 39 H 1.08998 * 109.47592 * 60.00047 * 10 9 7 40 40 H 1.08998 * 109.46982 * 299.99631 * 10 9 7 41 41 H 1.08001 * 118.35177 * 0.37875 * 12 11 10 42 42 H 1.08998 * 109.34082 * 222.73132 * 13 12 11 43 43 H 1.09003 * 109.33334 * 103.21928 * 13 12 11 44 44 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 45 45 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 46 46 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 49 49 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 50 50 H 1.09000 * 109.42664 * 283.57663 * 28 11 10 51 51 H 1.08997 * 109.42923 * 43.43013 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0206 -0.6939 1.2019 6 6 2.4119 -1.2474 2.1605 7 6 2.8893 -1.9223 3.3298 8 8 3.9364 -2.5394 3.2907 9 7 2.1781 -1.8736 4.4735 10 6 2.6667 -2.5637 5.6699 11 6 1.6946 -2.3550 6.8024 12 6 0.7893 -3.2603 7.0179 13 6 -0.2354 -3.1572 8.1104 14 7 0.1759 -2.1543 9.1010 15 6 -0.8760 -1.9429 10.1043 16 6 -1.0537 -3.1988 10.9180 17 8 -0.3709 -4.1739 10.6854 18 7 -1.9708 -3.2381 11.9050 19 6 -2.1364 -4.3825 12.6416 20 1 -1.5289 -5.2510 12.4339 21 6 -3.0857 -4.4249 13.6553 22 7 -3.8252 -3.3683 13.9076 23 14 -3.3109 -5.9839 14.6594 24 1 -2.3629 -7.0221 14.1810 25 1 -3.0447 -5.6933 16.0912 26 1 -4.7036 -6.4755 14.5047 27 6 0.5270 -0.8914 8.4304 28 6 1.8154 -1.1077 7.6324 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 1.3426 -1.3816 4.5047 39 1 3.6411 -2.1623 5.9484 40 1 2.7587 -3.6297 5.4623 41 1 0.7729 -4.1314 6.3797 42 1 -0.3404 -4.1257 8.5995 43 1 -1.1940 -2.8673 7.6799 44 1 -1.8127 -1.6994 9.6027 45 1 -0.5915 -1.1213 10.7615 46 1 -2.5166 -2.4582 12.0913 47 1 -4.4877 -3.3978 14.6155 48 1 -0.2772 -0.5991 7.7552 49 1 0.6845 -0.1122 9.1761 50 1 2.6548 -1.2099 8.3202 51 1 1.9853 -0.2522 6.9787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486505353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:19 Heat of formation + Delta-G solvation = -11.109196 kcal Electronic energy + Delta-G solvation = -28811.249234 eV Core-core repulsion = 24711.920723 eV Total energy + Delta-G solvation = -4099.328511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.05687 -39.22002 -38.03507 -37.75193 -35.54670 -33.95843 -33.24663 -32.39166 -31.24146 -30.78638 -28.61201 -27.87417 -27.86296 -26.29727 -24.58016 -23.71118 -23.39101 -21.89355 -21.21492 -19.24941 -19.12987 -17.90203 -17.43784 -16.52692 -16.40096 -16.15777 -15.65673 -15.53035 -14.98715 -14.84772 -14.79059 -14.69888 -14.40111 -14.04563 -13.86374 -13.77298 -13.56276 -13.03002 -13.01197 -12.91920 -12.71586 -12.32227 -12.31168 -12.26846 -12.23369 -11.90689 -11.85530 -11.80202 -11.51230 -11.37803 -11.13536 -10.95403 -10.84619 -10.67832 -10.50089 -10.46767 -10.34936 -10.23317 -9.51641 -9.39495 -8.94134 -8.49192 -7.99679 -7.86376 -6.43144 -3.83851 1.25704 1.79282 2.12516 2.93734 3.15420 3.23007 3.26323 3.33455 3.80883 3.87912 3.96261 4.23262 4.33449 4.35428 4.42108 4.50889 4.69319 4.90066 5.00047 5.04224 5.05011 5.18195 5.19880 5.22686 5.28100 5.28226 5.29381 5.36011 5.45163 5.49684 5.50873 5.52899 5.61863 5.66374 5.68986 5.69844 5.76677 5.87626 5.93373 6.02342 6.11909 6.22270 6.30569 6.41472 6.86369 6.87465 7.13962 7.28627 7.31930 7.54348 7.82062 8.05407 8.60379 9.17067 9.53065 10.04731 10.74635 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.001510 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.005490 B =18538.591205 C =18909.188550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.068 4.068 6 C -0.223 4.223 7 C 0.632 3.368 8 O -0.525 6.525 9 N -0.711 5.711 10 C 0.159 3.841 11 C -0.158 4.158 12 C -0.103 4.103 13 C 0.072 3.928 14 N -0.509 5.509 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.050 3.950 28 C -0.071 4.071 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.404 0.596 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.033 0.967 49 H 0.078 0.922 50 H 0.082 0.918 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 12.261 -26.187 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.070 4.070 6 C -0.226 4.226 7 C 0.418 3.582 8 O -0.403 6.403 9 N -0.362 5.362 10 C 0.037 3.963 11 C -0.159 4.159 12 C -0.123 4.123 13 C -0.055 4.055 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.078 4.078 28 C -0.108 4.108 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.239 0.761 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.064 10.979 -25.933 29.293 hybrid contribution -1.658 0.260 0.396 1.724 sum 6.406 11.240 -25.538 28.627 Atomic orbital electron populations 1.21916 0.92091 1.02962 1.02972 1.17965 0.96080 0.94445 0.87959 1.21906 1.01835 0.93214 1.02944 1.21918 1.01891 1.00689 0.95511 1.22544 0.96041 0.93953 0.94469 1.20718 1.02617 1.02374 0.96891 1.14694 0.83440 0.79529 0.80522 1.90869 1.22700 1.42417 1.84291 1.45982 1.25979 1.54108 1.10117 1.20415 0.96765 0.97489 0.81652 1.20818 0.98408 0.98586 0.98062 1.22377 0.95494 0.97595 0.96821 1.21264 0.93968 0.99533 0.90725 1.62035 1.40268 1.07451 1.13541 1.21909 0.93264 0.98601 0.94891 1.19736 0.84003 0.89378 0.84032 1.90483 1.48119 1.37083 1.70461 1.41875 1.33281 1.15130 1.29792 1.19756 1.18525 0.92630 1.11871 0.87833 1.25256 0.96127 0.98653 0.97895 1.69620 1.23269 1.29039 1.32400 0.85806 0.78130 0.81272 0.79178 1.19206 1.20753 1.20799 1.22224 0.96349 0.92267 0.97007 1.20404 0.98645 0.94647 0.97138 0.91808 0.91038 0.91868 0.91875 0.91014 0.91842 0.91882 0.91071 0.91833 0.76090 0.90456 0.90586 0.87065 0.86384 0.94135 0.93443 0.89171 0.77507 0.91940 0.94890 0.90380 0.89961 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.43 37.16 0.31 -0.32 16 2 C 0.04 0.20 0.95 -157.30 -0.15 0.05 16 3 C -0.14 -0.64 8.43 37.16 0.31 -0.33 16 4 C -0.14 -0.70 8.43 37.15 0.31 -0.39 16 5 C -0.07 -0.60 11.77 -37.12 -0.44 -1.03 16 6 C -0.22 -2.40 13.61 -38.83 -0.53 -2.93 16 7 C 0.63 7.71 7.65 -14.34 -0.11 7.60 16 8 O -0.53 -8.33 17.08 5.27 0.09 -8.24 16 9 N -0.71 -7.00 5.54 -63.95 -0.35 -7.35 16 10 C 0.16 1.69 5.72 -5.19 -0.03 1.66 16 11 C -0.16 -1.78 5.26 -100.92 -0.53 -2.31 16 12 C -0.10 -1.32 9.50 -35.97 -0.34 -1.66 16 13 C 0.07 1.12 5.22 -5.28 -0.03 1.09 16 14 N -0.51 -8.18 4.46 -237.56 -1.06 -9.23 16 15 C 0.04 0.77 5.44 -4.98 -0.03 0.74 16 16 C 0.44 10.21 7.54 -10.99 -0.08 10.12 16 17 O -0.58 -15.21 13.88 5.55 0.08 -15.14 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.05 0.60 5.59 -3.59 -0.02 0.58 16 28 C -0.07 -0.76 6.04 -28.03 -0.17 -0.93 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 3.19 8.43 -40.82 -0.34 2.85 16 39 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 40 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 41 H 0.11 1.28 7.81 -52.49 -0.41 0.87 16 42 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 43 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 44 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 45 H 0.09 1.40 7.94 -51.93 -0.41 0.99 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 49 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 426.10 15.07 6.42 6.42 Total: -1.00 -33.15 426.10 -9.39 -42.54 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -8.46 Total: 8.69 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.75 Total: 4.09 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.75 Total: -54.22 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -33.15 -9.39 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486505353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.430 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds