Wall clock time and date at job start Wed Apr 1 2020 04:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47177 * 240.00028 * 2 1 3 5 5 C 1.47196 * 109.46907 * 120.00021 * 2 1 3 6 6 C 2.64603 * 109.46937 * 119.99984 * 2 1 3 7 7 C 4.07805 * 109.47002 * 119.99865 * 2 1 3 8 8 O 1.21608 * 119.99715 * 118.26198 * 7 6 5 9 9 N 1.34772 * 119.99825 * 298.25386 * 7 6 5 10 10 C 1.46502 * 119.99664 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.29828 * 118.55677 * 94.99664 * 11 10 9 13 13 C 1.50140 * 123.28739 * 180.34547 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.97963 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50310 * 118.55265 * 275.01870 * 11 10 9 29 29 H 1.09000 * 109.47709 * 299.99646 * 1 2 3 30 30 H 1.09002 * 109.47509 * 60.00146 * 1 2 3 31 31 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46846 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47263 * 300.00051 * 3 2 1 34 34 H 1.09007 * 109.47245 * 59.99964 * 3 2 1 35 35 H 1.09002 * 109.47068 * 300.00157 * 4 2 1 36 36 H 1.08999 * 109.47417 * 60.00206 * 4 2 1 37 37 H 1.09000 * 109.47248 * 180.02562 * 4 2 1 38 38 H 0.97002 * 120.00754 * 0.02562 * 9 7 6 39 39 H 1.08998 * 109.47592 * 60.00047 * 10 9 7 40 40 H 1.08998 * 109.46982 * 299.99631 * 10 9 7 41 41 H 1.08001 * 118.35177 * 0.37875 * 12 11 10 42 42 H 1.08998 * 109.34082 * 222.73132 * 13 12 11 43 43 H 1.09003 * 109.33334 * 103.21928 * 13 12 11 44 44 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 45 45 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 46 46 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 49 49 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 50 50 H 1.09000 * 109.42664 * 283.57663 * 28 11 10 51 51 H 1.08997 * 109.42923 * 43.43013 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0206 -0.6939 1.2019 6 6 2.4119 -1.2474 2.1605 7 6 2.8893 -1.9223 3.3298 8 8 3.9364 -2.5394 3.2907 9 7 2.1781 -1.8736 4.4735 10 6 2.6667 -2.5637 5.6699 11 6 1.6946 -2.3550 6.8024 12 6 0.7893 -3.2603 7.0179 13 6 -0.2354 -3.1572 8.1104 14 7 0.1759 -2.1543 9.1010 15 6 -0.8760 -1.9429 10.1043 16 6 -1.0537 -3.1988 10.9180 17 8 -0.3709 -4.1739 10.6854 18 7 -1.9708 -3.2381 11.9050 19 6 -2.1364 -4.3825 12.6416 20 1 -1.5289 -5.2510 12.4339 21 6 -3.0857 -4.4249 13.6553 22 7 -3.8252 -3.3683 13.9076 23 14 -3.3109 -5.9839 14.6594 24 1 -2.3629 -7.0221 14.1810 25 1 -3.0447 -5.6933 16.0912 26 1 -4.7036 -6.4755 14.5047 27 6 0.5270 -0.8914 8.4304 28 6 1.8154 -1.1077 7.6324 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 1.3426 -1.3816 4.5047 39 1 3.6411 -2.1623 5.9484 40 1 2.7587 -3.6297 5.4623 41 1 0.7729 -4.1314 6.3797 42 1 -0.3404 -4.1257 8.5995 43 1 -1.1940 -2.8673 7.6799 44 1 -1.8127 -1.6994 9.6027 45 1 -0.5915 -1.1213 10.7615 46 1 -2.5166 -2.4582 12.0913 47 1 -4.4877 -3.3978 14.6155 48 1 -0.2772 -0.5991 7.7552 49 1 0.6845 -0.1122 9.1761 50 1 2.6548 -1.2099 8.3202 51 1 1.9853 -0.2522 6.9787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486505353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:18 Heat of formation + Delta-G solvation = -33.778167 kcal Electronic energy + Delta-G solvation = -28812.232235 eV Core-core repulsion = 24711.920723 eV Total energy + Delta-G solvation = -4100.311511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.06020 -40.55358 -39.31402 -38.48848 -36.67929 -35.86635 -34.31430 -33.30214 -33.11736 -31.79736 -29.85144 -28.21993 -28.20009 -27.68327 -26.11585 -24.86051 -24.30671 -22.94065 -21.91338 -21.04587 -19.95644 -19.87802 -18.45700 -17.77965 -17.47132 -17.05002 -16.74787 -16.68349 -16.43838 -16.08185 -15.76396 -15.48359 -15.35297 -15.23050 -15.20952 -15.10122 -14.69983 -14.16933 -13.88507 -13.76301 -13.51244 -13.38244 -13.33947 -13.26812 -13.00954 -12.92094 -12.76404 -12.62500 -12.51929 -12.40082 -12.30805 -12.26876 -12.11848 -12.09897 -11.73957 -11.46404 -11.44919 -11.34110 -11.26278 -10.30641 -10.27111 -10.00403 -9.92143 -9.18321 -8.45844 -5.93994 0.42552 0.89268 1.30674 1.36583 1.42062 1.55851 2.07073 2.11477 2.28953 2.39185 2.78031 3.12912 3.21213 3.39629 3.52638 3.79062 3.93582 3.95055 3.96439 4.16636 4.24445 4.30962 4.35588 4.40982 4.43830 4.53287 4.56923 4.63092 4.66273 4.73022 4.74052 4.77476 4.83083 4.93935 4.95502 4.95659 5.05737 5.07256 5.12142 5.19704 5.22302 5.34267 5.35886 5.37256 5.42854 5.83876 5.96139 6.12979 6.13417 6.21308 6.30261 6.62498 6.94110 7.14837 7.58495 8.14741 8.71743 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.001510 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.005490 B =18538.591205 C =18909.188550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.634 3.366 8 O -0.571 6.571 9 N -0.695 5.695 10 C 0.164 3.836 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.077 3.923 14 N -0.531 5.531 15 C 0.057 3.943 16 C 0.440 3.560 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.050 3.950 28 C -0.071 4.071 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.049 0.951 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 14.510 -27.683 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.041 4.041 6 C -0.271 4.271 7 C 0.422 3.578 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.041 3.959 11 C -0.137 4.137 12 C -0.141 4.141 13 C -0.050 4.050 14 N -0.256 5.256 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.077 4.077 28 C -0.108 4.108 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.131 0.869 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.112 0.888 50 H 0.096 0.904 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.396 13.274 -27.427 31.356 hybrid contribution -1.437 -0.379 0.762 1.670 sum 5.959 12.895 -26.665 30.213 Atomic orbital electron populations 1.21934 0.90798 1.02968 1.04088 1.18293 0.97062 0.94948 0.86735 1.21928 1.01455 0.92293 1.04090 1.21949 1.01469 1.00606 0.96014 1.23351 0.94235 0.92342 0.94147 1.20599 1.04661 1.04162 0.97714 1.14852 0.82849 0.78897 0.81237 1.90836 1.24709 1.44604 1.85077 1.45809 1.26031 1.53425 1.09280 1.20319 0.96662 0.97252 0.81638 1.20887 0.96988 0.98316 0.97503 1.22258 0.96102 0.98813 0.96896 1.21038 0.95467 0.97505 0.90970 1.61979 1.39877 1.09617 1.14135 1.21779 0.95022 0.95539 0.95039 1.20829 0.82271 0.90832 0.83283 1.90468 1.49165 1.39216 1.71263 1.41936 1.34195 1.14645 1.30449 1.19682 1.19542 0.93163 1.13689 0.90430 1.25989 0.95337 1.01582 0.98256 1.69674 1.23391 1.30291 1.32790 0.84899 0.78183 0.77553 0.77874 1.19938 1.19675 1.19625 1.22356 0.97217 0.90543 0.97606 1.20483 0.97874 0.95212 0.97248 0.91803 0.88875 0.92444 0.92544 0.88747 0.91876 0.92525 0.88658 0.92580 0.74672 0.90236 0.91361 0.86458 0.90855 0.93372 0.91296 0.86902 0.77012 0.91362 0.93233 0.88845 0.90412 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.43 71.98 0.61 -0.30 16 2 C 0.03 0.28 0.95 -53.99 -0.05 0.23 16 3 C -0.14 -0.93 8.43 71.98 0.61 -0.32 16 4 C -0.14 -1.13 8.43 71.98 0.61 -0.52 16 5 C -0.04 -0.63 11.77 31.12 0.37 -0.27 16 6 C -0.27 -5.70 13.61 30.02 0.41 -5.29 16 7 C 0.63 15.50 7.65 85.49 0.65 16.16 16 8 O -0.57 -18.59 17.08 -4.06 -0.07 -18.66 16 9 N -0.69 -13.04 5.54 -474.49 -2.63 -15.66 16 10 C 0.16 3.35 5.72 85.63 0.49 3.84 16 11 C -0.14 -2.89 5.26 -15.40 -0.08 -2.97 16 12 C -0.12 -3.06 9.50 26.68 0.25 -2.80 16 13 C 0.08 2.43 5.22 85.39 0.45 2.88 16 14 N -0.53 -16.52 4.46 -905.51 -4.04 -20.56 16 15 C 0.06 1.91 5.44 85.56 0.47 2.38 16 16 C 0.44 20.70 7.54 87.66 0.66 21.36 16 17 O -0.62 -33.76 13.88 -3.07 -0.04 -33.80 16 18 N -0.57 -29.21 5.29 -306.98 -1.62 -30.84 16 19 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 C 0.05 1.06 5.59 86.27 0.48 1.54 16 28 C -0.07 -1.34 6.04 29.75 0.18 -1.16 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.42 5.86 8.43 -92.71 -0.78 5.08 16 39 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 40 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 41 H 0.12 2.75 7.81 -2.91 -0.02 2.73 16 42 H 0.07 2.97 5.98 -2.39 -0.01 2.96 16 43 H 0.05 1.39 8.06 -2.39 -0.02 1.37 16 44 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 45 H 0.11 3.27 7.94 -2.39 -0.02 3.25 16 46 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 47 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 48 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 49 H 0.09 1.73 7.92 -2.39 -0.02 1.71 16 50 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -74.60 426.10 0.72 -73.89 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.57 Total: 33.05 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 7.37 Total: 16.63 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -8.01 Total: -116.13 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.11 Total: -52.46 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.60 0.72 -73.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486505353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds