Wall clock time and date at job start Wed Apr 1 2020 04:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47139 * 70.61899 * 3 2 1 5 5 C 1.52997 * 109.46878 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.47042 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47094 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99853 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99633 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99664 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.29828 * 118.55677 * 94.99664 * 11 10 9 13 13 C 1.50140 * 123.28739 * 180.34547 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.97963 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50310 * 118.55265 * 275.01870 * 11 10 9 29 29 H 4.44652 * 5.63341 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46862 * 310.61891 * 3 2 1 31 31 H 1.08992 * 109.47167 * 190.62441 * 3 2 1 32 32 H 1.08998 * 109.46885 * 59.99898 * 4 3 2 33 33 H 1.08998 * 109.47015 * 299.99895 * 4 3 2 34 34 H 1.08998 * 109.47665 * 60.00107 * 5 4 3 35 35 H 1.08998 * 109.46993 * 299.99640 * 5 4 3 36 36 H 1.08998 * 109.46942 * 59.99494 * 6 5 4 37 37 H 1.08995 * 109.46817 * 300.00107 * 6 5 4 38 38 H 0.97002 * 120.00754 * 0.02562 * 9 7 6 39 39 H 1.08998 * 109.47592 * 60.00047 * 10 9 7 40 40 H 1.08998 * 109.46982 * 299.99631 * 10 9 7 41 41 H 1.08001 * 118.35177 * 0.37875 * 12 11 10 42 42 H 1.08998 * 109.34082 * 222.73132 * 13 12 11 43 43 H 1.09003 * 109.33334 * 103.21928 * 13 12 11 44 44 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 45 45 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 46 46 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 49 49 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 50 50 H 1.09000 * 109.42664 * 283.57663 * 28 11 10 51 51 H 1.08997 * 109.42923 * 43.43013 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.4778 -1.3608 5 6 4.6862 -0.4777 -1.3605 6 6 5.1965 -0.9556 -2.7215 7 6 6.7035 -0.9549 -2.7214 8 8 7.3097 -0.6069 -1.7303 9 7 7.3775 -1.3419 -3.8225 10 6 8.8425 -1.3418 -3.8222 11 6 9.3451 -1.8123 -5.1628 12 6 9.6457 -0.9233 -6.0599 13 6 10.1477 -1.2731 -7.4310 14 7 10.6215 -2.6627 -7.4602 15 6 10.9906 -3.0646 -8.8241 16 6 12.1874 -2.2680 -9.2759 17 8 12.6843 -1.4467 -8.5344 18 7 12.7062 -2.4690 -10.5034 19 6 13.7916 -1.7403 -10.9166 20 1 14.2336 -1.0085 -10.2567 21 6 14.3230 -1.9435 -12.1844 22 7 15.3630 -1.2447 -12.5806 23 14 13.5580 -3.2088 -13.3259 24 1 12.5006 -2.5624 -14.1439 25 1 14.6047 -3.7655 -14.2202 26 1 12.9607 -4.3045 -12.5211 27 6 9.5961 -3.5614 -6.9045 28 6 9.4758 -3.2904 -5.4026 29 1 -1.0499 0.0001 -0.0002 30 1 3.0096 -0.6682 0.7801 31 1 3.0089 1.0108 0.1895 32 1 2.7926 0.1911 -2.1408 33 1 2.7934 -1.4880 -1.5501 34 1 5.0495 -1.1468 -0.5805 35 1 5.0494 0.5324 -1.1709 36 1 4.8332 -0.2861 -3.5012 37 1 4.8332 -1.9655 -2.9115 38 1 6.8927 -1.6206 -4.6151 39 1 9.2059 -2.0109 -3.0423 40 1 9.2057 -0.3317 -3.6327 41 1 9.5292 0.1202 -5.8070 42 1 10.9682 -0.6064 -7.6959 43 1 9.3399 -1.1520 -8.1528 44 1 10.1540 -2.8767 -9.4971 45 1 11.2353 -4.1266 -8.8362 46 1 12.3091 -3.1261 -11.0962 47 1 15.7342 -1.3867 -13.4654 48 1 8.6389 -3.3692 -7.3892 49 1 9.8907 -4.5982 -7.0672 50 1 10.3656 -3.6628 -4.8949 51 1 8.5957 -3.8005 -5.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486507541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:23 Heat of formation + Delta-G solvation = -10.513367 kcal Electronic energy + Delta-G solvation = -28549.360994 eV Core-core repulsion = 24450.058321 eV Total energy + Delta-G solvation = -4099.302674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.13954 -39.35539 -37.94999 -36.62389 -35.53625 -34.00171 -33.61659 -33.05076 -31.68568 -30.84976 -30.45763 -28.59163 -26.46432 -25.14882 -23.90930 -23.63559 -22.05478 -21.66394 -20.64090 -19.40510 -18.52001 -18.33421 -17.88660 -17.15749 -16.54273 -16.35219 -16.14764 -15.53681 -15.44042 -15.02598 -14.85697 -14.69799 -14.42384 -14.16138 -13.99804 -13.95710 -13.42884 -13.37225 -13.25527 -12.92790 -12.76313 -12.46972 -12.37266 -12.26372 -12.17071 -12.03092 -11.85782 -11.71684 -11.49737 -11.21856 -11.14034 -10.98137 -10.64810 -10.61867 -10.54701 -10.52472 -10.15458 -9.99328 -9.57438 -9.31342 -8.95212 -8.62202 -8.20673 -7.98146 -6.32918 -3.84427 1.93860 2.37689 2.39196 2.41729 3.00466 3.04341 3.13184 3.14190 3.70705 3.87587 3.90939 4.08314 4.36038 4.44607 4.47239 4.53234 4.62184 4.76531 4.83024 4.85407 5.03894 5.12136 5.18187 5.20488 5.23543 5.24698 5.32790 5.34798 5.42599 5.45650 5.51871 5.55861 5.60802 5.61195 5.65669 5.77316 5.78217 5.82215 5.89180 5.89616 6.03002 6.16374 6.25629 6.35421 6.84115 7.17278 7.19074 7.22508 7.24330 7.56616 7.96619 8.12763 8.58241 8.93477 9.40497 9.81234 10.80221 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.001332 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.334066 B =21014.763035 C =21265.630444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.509 3.491 8 O -0.542 6.542 9 N -0.727 5.727 10 C 0.158 3.842 11 C -0.156 4.156 12 C -0.107 4.107 13 C 0.072 3.928 14 N -0.509 5.509 15 C 0.042 3.958 16 C 0.452 3.548 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.050 3.950 28 C -0.071 4.071 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.033 0.967 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.296 -3.823 17.569 32.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.186 4.186 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.378 5.378 10 C 0.035 3.965 11 C -0.157 4.157 12 C -0.126 4.126 13 C -0.055 4.055 14 N -0.233 5.233 15 C -0.090 4.090 16 C 0.237 3.763 17 O -0.441 6.441 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.078 4.078 28 C -0.108 4.108 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.892 -2.991 18.927 32.211 hybrid contribution -1.554 -1.089 -2.083 2.817 sum -27.446 -4.080 16.844 32.460 Atomic orbital electron populations 1.24937 0.96032 1.01363 1.00871 1.23222 0.94668 1.00246 1.00430 1.18768 0.84520 1.03079 0.98802 1.21562 0.95290 1.02028 0.96343 1.21352 0.93916 1.03051 0.95983 1.21684 0.91875 1.04011 1.00521 1.20758 0.90261 0.76678 0.82742 1.90717 1.70573 1.47370 1.33283 1.46178 1.07424 1.68221 1.16009 1.20319 0.79228 1.01569 0.95378 1.20849 1.03905 0.95901 0.95009 1.22336 0.96142 0.98948 0.95209 1.21268 0.99756 0.91117 0.93356 1.62023 1.38994 1.02113 1.20183 1.21943 0.97205 1.00483 0.89333 1.19637 0.86821 0.87006 0.82796 1.90526 1.62730 1.37202 1.53607 1.42214 1.29767 1.37064 1.13972 1.19435 1.05224 1.18436 1.00285 0.86243 1.25030 0.96300 0.97715 0.97027 1.69621 1.22328 1.40143 1.20020 0.86684 0.79726 0.81531 0.81520 1.19681 1.20155 1.19487 1.22226 0.93315 0.97364 0.94898 1.20396 1.01992 0.92500 0.95914 0.76718 0.89389 0.89371 0.91427 0.91454 0.90847 0.90837 0.88838 0.88853 0.76536 0.90985 0.91079 0.87088 0.86394 0.94124 0.93321 0.89052 0.79737 0.91604 0.94845 0.90417 0.90020 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.19 -1.33 13.34 -37.12 -0.50 -1.83 16 3 C -0.02 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.11 -0.55 5.17 -26.73 -0.14 -0.69 16 5 C -0.11 -0.62 4.50 -26.73 -0.12 -0.74 16 6 C -0.14 -0.77 5.70 -27.88 -0.16 -0.93 16 7 C 0.51 4.66 7.83 -10.99 -0.09 4.57 16 8 O -0.54 -7.24 15.98 5.56 0.09 -7.15 16 9 N -0.73 -5.85 5.55 -61.47 -0.34 -6.19 16 10 C 0.16 1.58 5.72 -5.19 -0.03 1.55 16 11 C -0.16 -1.66 5.26 -100.92 -0.53 -2.20 16 12 C -0.11 -1.31 9.50 -35.97 -0.34 -1.65 16 13 C 0.07 1.07 5.22 -5.28 -0.03 1.04 16 14 N -0.51 -7.74 4.46 -237.56 -1.06 -8.80 16 15 C 0.04 0.67 5.44 -4.98 -0.03 0.64 16 16 C 0.45 9.95 7.54 -10.99 -0.08 9.86 16 17 O -0.56 -14.51 13.88 5.55 0.08 -14.44 16 18 N -0.59 -13.73 5.09 -10.96 -0.06 -13.79 16 19 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 23 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 27 C 0.05 0.56 5.59 -3.59 -0.02 0.54 16 28 C -0.07 -0.71 6.04 -28.03 -0.17 -0.88 16 29 H 0.22 0.70 7.80 -54.09 -0.42 0.27 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.40 2.33 8.46 -40.82 -0.35 1.99 16 39 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 41 H 0.11 1.24 7.81 -52.49 -0.41 0.83 16 42 H 0.12 2.20 5.98 -51.93 -0.31 1.89 16 43 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 44 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.09 1.28 7.94 -51.93 -0.41 0.87 16 46 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 47 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 48 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 49 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 423.72 15.07 6.39 6.39 Total: -1.00 -34.97 423.72 -9.33 -44.31 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.41 Total: 9.46 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.08 Total: 0.63 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.68 Total: -53.51 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.17 Total: -21.59 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.97 -9.33 -44.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486507541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.792 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds