Wall clock time and date at job start Wed Apr 1 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47117 * 119.99960 * 2 1 4 4 C 1.50701 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.32872 * 120.00236 * 179.97438 * 3 2 1 6 6 C 1.50702 * 120.00494 * 186.01035 * 5 3 2 7 7 C 1.50697 * 109.47318 * 123.97120 * 6 5 3 8 8 O 1.21275 * 119.99967 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99569 * 180.02562 * 7 6 5 10 10 C 1.47155 * 120.67966 * 180.02562 * 9 7 6 11 11 C 1.53900 * 108.04580 * 132.61440 * 10 9 7 12 12 H 1.08997 * 112.11632 * 182.00966 * 11 10 9 13 13 C 1.54547 * 107.80485 * 306.64233 * 11 10 9 14 14 C 1.54255 * 104.93526 * 88.96911 * 13 11 10 15 15 C 1.54548 * 104.94367 * 359.97438 * 14 13 11 16 16 H 1.08998 * 112.20718 * 146.47380 * 15 14 13 17 17 C 1.48440 * 120.81384 * 0.36565 * 9 7 6 18 18 N 1.48730 * 107.17342 * 58.43501 * 11 10 9 19 19 C 1.46896 * 110.99990 * 167.48109 * 18 11 10 20 20 C 1.50702 * 109.46859 * 299.14928 * 19 18 11 21 21 O 1.21294 * 120.00252 * 352.76306 * 20 19 18 22 22 N 1.34776 * 119.99585 * 172.76834 * 20 19 18 23 23 C 1.37105 * 119.99888 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99639 * 0.02562 * 23 22 20 25 25 C 1.38945 * 119.99993 * 179.97438 * 23 22 20 26 26 N 1.31417 * 119.99902 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00402 * 0.02562 * 25 23 22 28 28 H 1.48508 * 109.47120 * 89.99192 * 27 25 23 29 29 H 1.48493 * 109.47408 * 209.99885 * 27 25 23 30 30 H 1.48508 * 109.46929 * 329.99990 * 27 25 23 31 31 H 1.07997 * 120.00212 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.99898 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.00450 * 179.97438 * 2 1 3 34 34 H 1.08994 * 109.47456 * 212.44580 * 4 3 2 35 35 H 1.08998 * 109.46581 * 332.45032 * 4 3 2 36 36 H 1.08998 * 109.46945 * 92.44861 * 4 3 2 37 37 H 1.08001 * 120.00162 * 6.00959 * 5 3 2 38 38 H 1.08999 * 109.46537 * 3.96742 * 6 5 3 39 39 H 1.08996 * 109.47051 * 243.97710 * 6 5 3 40 40 H 1.08997 * 109.74628 * 12.97582 * 10 9 7 41 41 H 1.08997 * 109.78478 * 252.27398 * 10 9 7 42 42 H 1.09001 * 110.34234 * 207.82722 * 13 11 10 43 43 H 1.08990 * 110.34964 * 329.99860 * 13 11 10 44 44 H 1.09009 * 110.34724 * 241.13092 * 14 13 11 45 45 H 1.08996 * 110.34924 * 118.86841 * 14 13 11 46 46 H 1.08994 * 110.57982 * 107.89368 * 17 9 7 47 47 H 1.09003 * 109.55931 * 346.75150 * 17 9 7 48 48 H 1.09002 * 109.47130 * 59.14602 * 19 18 11 49 49 H 1.08995 * 109.47282 * 179.15133 * 19 18 11 50 50 H 0.96997 * 120.00405 * 359.97438 * 22 20 19 51 51 H 0.97001 * 119.99726 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1465 2.5721 0.1372 7 6 5.0847 2.4869 1.3133 8 8 5.1368 1.4719 1.9751 9 7 5.8659 3.5386 1.6297 10 6 6.7879 3.4715 2.7746 11 6 8.1597 3.9950 2.3133 12 1 8.9068 3.9416 3.1052 13 6 8.5689 3.2008 1.0523 14 6 7.9759 3.9966 -0.1286 15 6 7.2598 5.2015 0.5224 16 1 7.3079 6.0949 -0.1001 17 6 5.8109 4.7923 0.8369 18 7 7.9574 5.3847 1.8234 19 6 9.2433 6.0706 1.6399 20 6 9.9672 6.1424 2.9597 21 8 9.4097 5.7887 3.9772 22 7 11.2341 6.5996 3.0093 23 6 11.8925 6.6654 4.2101 24 1 11.3961 6.3505 5.1161 25 6 13.1987 7.1363 4.2613 26 7 13.8300 7.1989 5.4122 27 14 14.0576 7.6804 2.6942 28 1 13.8080 9.1270 2.4696 29 1 15.5180 7.4440 2.8224 30 1 13.5292 6.9027 1.5446 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8688 -0.9353 0.0004 34 1 1.8803 3.3273 -0.5518 35 1 0.3403 2.4381 -0.4762 36 1 1.1668 2.9160 1.0260 37 1 3.9331 0.3440 -0.0970 38 1 3.4402 3.3873 0.2940 39 1 4.7189 2.7573 -0.7717 40 1 6.8820 2.4393 3.1117 41 1 6.4116 4.0918 3.5881 42 1 9.6548 3.1534 0.9701 43 1 8.1476 2.1961 1.0839 44 1 7.2616 3.3834 -0.6783 45 1 8.7703 4.3401 -0.7911 46 1 5.3199 5.5830 1.4040 47 1 5.2690 4.6133 -0.0919 48 1 9.8503 5.5187 0.9221 49 1 9.0670 7.0794 1.2669 50 1 11.6800 6.8821 2.1956 51 1 14.7418 7.5280 5.4479 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493922364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:11 Heat of formation + Delta-G solvation = -32.393257 kcal Electronic energy + Delta-G solvation = -31057.320145 eV Core-core repulsion = 26957.068688 eV Total energy + Delta-G solvation = -4100.251457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.14694 -40.45292 -39.50943 -37.75160 -36.08745 -35.51697 -33.77939 -33.56769 -32.47493 -32.27607 -29.95697 -29.05270 -27.76054 -26.94001 -25.60685 -25.21872 -22.42757 -21.65453 -21.31521 -21.01403 -20.20543 -19.40800 -18.77700 -18.30393 -17.69868 -17.37238 -17.04293 -16.73977 -16.60703 -16.08977 -15.85650 -15.48426 -15.25269 -15.08001 -14.96546 -14.84307 -14.56144 -14.32358 -14.10745 -13.96101 -13.88385 -13.58742 -13.40187 -13.36260 -13.20562 -12.92066 -12.54397 -12.46953 -12.40974 -12.28182 -12.21948 -11.97361 -11.96659 -11.83671 -11.70552 -11.45653 -11.40144 -11.37632 -10.84761 -10.34915 -10.22583 -9.79892 -9.35004 -9.09817 -8.41032 -6.01804 0.43973 1.29305 1.35440 1.44088 1.66091 1.91756 1.97289 2.22934 2.23772 2.64675 3.11189 3.16408 3.53246 3.70782 3.75885 3.84917 3.90915 3.99365 4.02170 4.17187 4.26648 4.29033 4.37321 4.37870 4.44068 4.46046 4.50188 4.58705 4.59038 4.67906 4.73839 4.76941 4.83513 4.85413 4.90835 4.92875 4.99394 5.02255 5.14466 5.15684 5.25400 5.46743 5.49809 5.53721 5.60742 5.79995 5.81682 5.91458 6.04531 6.06576 6.48661 6.60241 6.89226 7.19943 7.40749 7.98364 8.76720 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.002019 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.267142 B =13867.488521 C =14095.460379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.145 4.145 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.141 4.141 6 C -0.103 4.103 7 C 0.513 3.487 8 O -0.594 6.594 9 N -0.603 5.603 10 C 0.138 3.862 11 C 0.053 3.947 12 H 0.075 0.925 13 C -0.144 4.144 14 C -0.134 4.134 15 C 0.046 3.954 16 H 0.143 0.857 17 C 0.118 3.882 18 N -0.498 5.498 19 C 0.047 3.953 20 C 0.449 3.551 21 O -0.607 6.607 22 N -0.592 5.592 23 C -0.327 4.327 24 H 0.053 0.947 25 C -0.016 4.016 26 N -0.936 5.936 27 Si 0.966 3.034 28 H -0.255 1.255 29 H -0.277 1.277 30 H -0.231 1.231 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.131 0.869 48 H 0.076 0.924 49 H 0.128 0.872 50 H 0.389 0.611 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.258 -5.195 -24.264 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.109 4.109 4 C -0.181 4.181 5 C -0.159 4.159 6 C -0.142 4.142 7 C 0.303 3.697 8 O -0.475 6.475 9 N -0.336 5.336 10 C 0.014 3.986 11 C -0.057 4.057 12 H 0.093 0.907 13 C -0.184 4.184 14 C -0.173 4.173 15 C -0.062 4.062 16 H 0.160 0.840 17 C -0.003 4.003 18 N -0.221 5.221 19 C -0.085 4.085 20 C 0.237 3.763 21 O -0.491 6.491 22 N -0.234 5.234 23 C -0.456 4.456 24 H 0.071 0.929 25 C -0.215 4.215 26 N -0.577 5.577 27 Si 0.786 3.214 28 H -0.180 1.180 29 H -0.203 1.203 30 H -0.154 1.154 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.149 0.851 48 H 0.094 0.906 49 H 0.146 0.854 50 H 0.225 0.775 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.748 -5.546 -22.727 32.630 hybrid contribution 1.917 -0.606 0.161 2.017 sum -20.831 -6.152 -22.566 31.321 Atomic orbital electron populations 1.24638 0.95236 1.03184 0.98057 1.21998 0.96079 0.96182 1.02011 1.20833 0.93912 0.95412 1.00750 1.20978 1.00831 0.93695 1.02619 1.22754 0.94308 0.97807 1.01074 1.20850 0.98010 0.98545 0.96767 1.21244 0.80530 0.81793 0.86130 1.90681 1.69343 1.32343 1.55134 1.48555 1.39421 1.15127 1.30516 1.21413 0.88484 1.00224 0.88483 1.23295 0.96546 0.88277 0.97584 0.90663 1.22798 1.00366 0.99682 0.95518 1.22804 1.00814 0.96861 0.96822 1.23741 0.94010 0.99229 0.89221 0.83976 1.22510 0.96226 0.84727 0.96880 1.65125 1.18206 1.14831 1.23908 1.21955 0.91171 1.02574 0.92763 1.20938 0.81900 0.81337 0.92099 1.90549 1.67497 1.52743 1.38322 1.42045 1.13087 1.59864 1.08359 1.18980 0.97121 1.42665 0.86815 0.92857 1.26128 0.96585 0.96843 1.01929 1.69817 1.13397 1.46911 1.27550 0.85357 0.78142 0.80011 0.77938 1.17959 1.20274 1.15424 0.86890 0.87040 0.87468 0.89338 0.90392 0.91616 0.88405 0.85557 0.84934 0.91409 0.92709 0.92553 0.92292 0.89517 0.89799 0.89757 0.85122 0.90562 0.85381 0.77550 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 14.11 66.64 0.94 -1.15 16 2 C -0.14 -2.28 9.83 23.43 0.23 -2.05 16 3 C -0.11 -1.70 5.98 -18.71 -0.11 -1.82 16 4 C -0.13 -1.26 8.58 71.24 0.61 -0.65 16 5 C -0.14 -2.46 8.45 24.51 0.21 -2.25 16 6 C -0.10 -1.36 4.18 29.10 0.12 -1.24 16 7 C 0.51 11.95 7.70 87.66 0.68 12.63 16 8 O -0.59 -20.08 15.50 -3.01 -0.05 -20.13 16 9 N -0.60 -13.33 2.26 -811.86 -1.83 -15.16 16 10 C 0.14 4.24 5.90 86.56 0.51 4.75 16 11 C 0.05 1.66 3.12 45.39 0.14 1.80 16 12 H 0.08 3.14 5.89 -2.39 -0.01 3.13 16 13 C -0.14 -3.59 5.54 31.55 0.17 -3.41 16 14 C -0.13 -2.10 5.52 31.55 0.17 -1.92 16 15 C 0.05 0.72 3.63 45.35 0.16 0.88 16 16 H 0.14 1.26 8.09 -2.39 -0.02 1.24 16 17 C 0.12 1.59 5.91 86.28 0.51 2.10 16 18 N -0.50 -13.48 4.77 -831.73 -3.97 -17.45 16 19 C 0.05 1.32 5.33 85.56 0.46 1.77 16 20 C 0.45 19.70 7.19 87.66 0.63 20.33 16 21 O -0.61 -33.01 14.06 -3.07 -0.04 -33.05 16 22 N -0.59 -27.35 5.09 -306.98 -1.56 -28.91 16 23 C -0.33 -19.04 10.16 84.04 0.85 -18.18 16 24 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 25 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 26 N -0.94 -56.60 13.96 21.66 0.30 -56.30 16 27 Si 0.97 38.35 27.74 68.60 1.90 40.26 16 28 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 29 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 30 H -0.23 -7.63 6.52 99.48 0.65 -6.99 16 31 H 0.11 1.06 6.11 -2.91 -0.02 1.05 16 32 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.09 0.53 6.52 -2.39 -0.02 0.52 16 35 H 0.08 0.61 6.31 -2.39 -0.02 0.60 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 2.03 8.05 -2.91 -0.02 2.01 16 38 H 0.13 1.07 5.60 -2.39 -0.01 1.06 16 39 H 0.13 0.91 7.61 -2.39 -0.02 0.89 16 40 H 0.07 2.34 7.10 -2.39 -0.02 2.32 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.47 8.12 -2.39 -0.02 1.46 16 43 H 0.06 1.58 7.84 -2.39 -0.02 1.56 16 44 H 0.09 1.07 7.86 -2.38 -0.02 1.05 16 45 H 0.08 1.09 8.07 -2.39 -0.02 1.07 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.13 0.60 6.12 -2.39 -0.01 0.58 16 48 H 0.08 1.81 7.00 -2.39 -0.02 1.80 16 49 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 50 H 0.39 14.76 5.76 -92.71 -0.53 14.23 16 51 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -85.51 397.17 1.86 -83.64 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.35 Total: 35.96 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.76 Total: 11.13 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -7.06 Total: -117.82 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.09 Total: -53.18 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.26 kcal Total: -85.51 1.86 -83.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493922364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.251 kcal (2) G-P(sol) polarization free energy of solvation -85.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds