Wall clock time and date at job start Wed Apr 1 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47113 * 120.00161 * 2 1 4 4 C 1.50701 * 120.00293 * 3.08780 * 3 2 1 5 5 C 1.32871 * 120.00248 * 183.08677 * 3 2 1 6 6 C 1.50708 * 119.99805 * 354.15667 * 5 3 2 7 7 C 1.50696 * 109.46995 * 124.15343 * 6 5 3 8 8 O 1.21280 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99641 * 179.97438 * 7 6 5 10 10 C 1.47158 * 120.68091 * 179.97438 * 9 7 6 11 11 C 1.53894 * 108.03871 * 132.66021 * 10 9 7 12 12 H 1.09006 * 112.12065 * 182.01582 * 11 10 9 13 13 C 1.54548 * 107.81091 * 306.64618 * 11 10 9 14 14 C 1.54249 * 104.93895 * 88.96728 * 13 11 10 15 15 C 1.54545 * 104.93943 * 0.02562 * 14 13 11 16 16 H 1.09005 * 112.20705 * 146.46979 * 15 14 13 17 17 C 1.48438 * 120.81101 * 0.41153 * 9 7 6 18 18 N 1.48724 * 104.32521 * 24.74178 * 15 14 13 19 19 C 1.46901 * 111.00071 * 78.35830 * 18 15 14 20 20 C 1.50705 * 109.47049 * 184.16720 * 19 18 15 21 21 O 1.21291 * 119.99885 * 353.52739 * 20 19 18 22 22 N 1.34777 * 120.00014 * 173.53179 * 20 19 18 23 23 C 1.37089 * 120.00252 * 180.02562 * 22 20 19 24 24 H 1.08004 * 119.99934 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00326 * 179.97438 * 23 22 20 26 26 N 1.31413 * 119.99926 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00200 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.46926 * 60.00049 * 27 25 23 29 29 H 1.48499 * 109.47118 * 179.97438 * 27 25 23 30 30 H 1.48506 * 109.47011 * 299.99927 * 27 25 23 31 31 H 1.08004 * 119.99861 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00388 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.99861 * 180.02562 * 2 1 3 34 34 H 1.08997 * 109.47170 * 270.00596 * 4 3 2 35 35 H 1.09001 * 109.46658 * 29.99833 * 4 3 2 36 36 H 1.08992 * 109.47439 * 149.99256 * 4 3 2 37 37 H 1.08002 * 120.00169 * 174.15098 * 5 3 2 38 38 H 1.09005 * 109.46706 * 4.15102 * 6 5 3 39 39 H 1.08994 * 109.47120 * 244.15480 * 6 5 3 40 40 H 1.09001 * 109.74486 * 13.02460 * 10 9 7 41 41 H 1.08996 * 109.78903 * 252.31608 * 10 9 7 42 42 H 1.09003 * 110.34962 * 207.83558 * 13 11 10 43 43 H 1.09000 * 110.34436 * 329.98979 * 13 11 10 44 44 H 1.09001 * 110.34939 * 241.13523 * 14 13 11 45 45 H 1.09005 * 110.34675 * 118.86621 * 14 13 11 46 46 H 1.08999 * 110.58471 * 107.85019 * 17 9 7 47 47 H 1.09000 * 109.56274 * 346.70544 * 17 9 7 48 48 H 1.08999 * 109.47613 * 304.16730 * 19 18 15 49 49 H 1.08998 * 109.46750 * 64.16927 * 19 18 15 50 50 H 0.97010 * 119.99915 * 359.97438 * 22 20 19 51 51 H 0.96995 * 119.99966 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3125 2.5782 0.0703 5 6 3.3916 1.2749 -0.0620 6 6 4.1496 -0.0262 0.0006 7 6 5.0361 -0.1498 -1.2118 8 8 5.0505 0.7314 -2.0449 9 7 5.8128 -1.2398 -1.3702 10 6 6.6837 -1.3764 -2.5485 11 6 8.0786 -1.8081 -2.0627 12 1 8.7904 -1.8955 -2.8836 13 6 8.5351 -0.8021 -0.9819 14 6 8.0008 -1.3759 0.3465 15 6 7.2689 -2.6786 -0.0480 16 1 7.3522 -3.4469 0.7208 17 6 5.8025 -2.3332 -0.3663 18 7 7.9109 -3.0890 -1.3252 19 6 9.2099 -3.7296 -1.0795 20 6 9.8748 -4.0383 -2.3963 21 8 9.2741 -3.8618 -3.4351 22 7 11.1368 -4.5107 -2.4195 23 6 11.7419 -4.7911 -3.6173 24 1 11.2070 -4.6338 -4.5423 25 6 13.0432 -5.2776 -3.6413 26 7 13.6941 -5.4685 -2.5158 27 14 13.8674 -5.6603 -5.2734 28 1 13.9304 -4.4266 -6.0973 29 1 15.2434 -6.1616 -5.0275 30 1 13.0836 -6.6965 -5.9927 31 1 -0.5400 0.9354 0.0004 32 1 -0.5401 -0.9353 -0.0004 33 1 1.8687 -0.9354 -0.0004 34 1 1.0833 2.9203 -0.9389 35 1 0.3850 2.4335 0.6243 36 1 1.9253 3.3240 0.5764 37 1 3.9271 2.2079 -0.1573 38 1 3.4443 -0.8570 0.0214 39 1 4.7620 -0.0469 0.9021 40 1 6.7539 -0.4203 -3.0673 41 1 6.2781 -2.1317 -3.2216 42 1 9.6230 -0.7396 -0.9574 43 1 8.1040 0.1807 -1.1728 44 1 7.3056 -0.6756 0.8095 45 1 8.8262 -1.5955 1.0237 46 1 5.2946 -3.2125 -0.7626 47 1 5.2993 -1.9930 0.5387 48 1 9.8434 -3.0567 -0.5016 49 1 9.0593 -4.6545 -0.5229 50 1 11.6174 -4.6517 -1.5887 51 1 14.6024 -5.8085 -2.5325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493922365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:15 Heat of formation + Delta-G solvation = -13.787464 kcal Electronic energy + Delta-G solvation = -31046.885558 eV Core-core repulsion = 26947.440908 eV Total energy + Delta-G solvation = -4099.444649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05118 -39.17326 -37.82669 -37.07651 -34.57399 -33.88625 -32.47959 -31.50281 -31.30941 -30.95924 -30.17441 -27.96566 -26.16199 -25.37323 -24.44934 -23.77154 -22.16659 -20.61381 -20.47568 -19.31015 -18.51137 -17.87717 -17.80292 -17.31600 -16.43597 -16.09788 -15.88156 -15.66705 -15.05886 -14.74697 -14.60956 -14.41079 -14.15086 -13.94604 -13.77706 -13.59177 -13.50097 -13.33096 -12.89853 -12.77861 -12.62333 -12.45087 -12.23482 -12.14454 -11.94125 -11.81820 -11.61482 -11.40291 -11.20145 -11.00474 -10.93628 -10.79733 -10.74831 -10.72830 -10.45964 -10.40588 -10.23910 -9.81670 -9.48821 -8.81193 -8.49300 -8.35251 -8.15397 -7.98478 -6.44556 -3.85435 1.07614 2.60479 2.70284 3.01953 3.18296 3.24399 3.28661 3.86892 3.88576 4.18392 4.34544 4.40844 4.58280 4.64251 4.71846 4.76220 4.89079 4.98011 5.01496 5.06910 5.13700 5.18582 5.22701 5.24024 5.32521 5.35751 5.41918 5.48456 5.49874 5.52899 5.67338 5.73183 5.75071 5.85562 5.87046 5.90804 6.02568 6.04780 6.09170 6.16490 6.19167 6.22163 6.31142 6.43421 6.58392 6.66206 7.01349 7.16053 7.42695 7.52397 8.02823 8.16142 8.57948 9.14870 9.50839 10.02053 10.72934 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029201 B = 0.001998 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.655132 B =14007.235889 C =14151.899179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.119 4.119 7 C 0.516 3.484 8 O -0.544 6.544 9 N -0.607 5.607 10 C 0.129 3.871 11 C 0.055 3.945 12 H 0.127 0.873 13 C -0.149 4.149 14 C -0.143 4.143 15 C 0.043 3.957 16 H 0.104 0.896 17 C 0.123 3.877 18 N -0.478 5.478 19 C 0.036 3.964 20 C 0.441 3.559 21 O -0.579 6.579 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.090 0.910 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.641 10.049 12.505 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.112 4.112 4 C -0.172 4.172 5 C -0.134 4.134 6 C -0.159 4.159 7 C 0.304 3.696 8 O -0.421 6.421 9 N -0.341 5.341 10 C 0.007 3.993 11 C -0.055 4.055 12 H 0.144 0.856 13 C -0.188 4.188 14 C -0.182 4.182 15 C -0.067 4.067 16 H 0.122 0.878 17 C 0.000 4.000 18 N -0.201 5.201 19 C -0.096 4.096 20 C 0.227 3.773 21 O -0.463 6.463 22 N -0.198 5.198 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.542 5.542 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.108 0.892 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.149 10.144 11.071 25.129 hybrid contribution 1.516 0.030 0.329 1.552 sum -18.633 10.174 11.400 24.097 Atomic orbital electron populations 1.24417 0.95718 1.02043 1.00008 1.21981 0.95369 0.96335 1.00518 1.20552 0.93876 0.94382 1.02342 1.20775 1.00017 0.94158 1.02209 1.22802 0.93917 0.97756 0.98904 1.20957 0.98803 0.98547 0.97553 1.20498 0.80180 0.81325 0.87607 1.90692 1.66803 1.39830 1.44798 1.48519 1.42446 1.19108 1.23997 1.21811 0.88700 1.02075 0.86720 1.23591 0.97186 0.86862 0.97813 0.85573 1.22877 1.00929 1.00030 0.94967 1.22807 1.00034 0.97449 0.97890 1.23505 0.94341 0.95965 0.92901 0.87844 1.22188 0.96278 0.90245 0.91311 1.65130 1.20229 1.21470 1.13239 1.21971 0.90553 0.99638 0.97435 1.19697 0.83031 0.84603 0.89967 1.90509 1.64292 1.57571 1.33964 1.41873 1.11635 1.56790 1.09530 1.19646 0.96357 1.40340 0.86592 0.87936 1.25262 0.96637 0.97245 0.98729 1.69600 1.12810 1.45689 1.26142 0.85921 0.77928 0.79008 0.81394 1.19904 1.20984 1.19871 0.88111 0.88134 0.86551 0.91436 0.91637 0.91624 0.86197 0.88044 0.87947 0.89254 0.90500 0.91656 0.91309 0.91603 0.91581 0.90067 0.89872 0.93209 0.89192 0.77508 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 14.09 28.88 0.41 -0.88 16 2 C -0.12 -1.00 9.33 -37.83 -0.35 -1.36 16 3 C -0.11 -0.98 5.98 -102.87 -0.62 -1.60 16 4 C -0.12 -0.82 9.44 36.01 0.34 -0.48 16 5 C -0.12 -1.11 8.43 -36.15 -0.30 -1.41 16 6 C -0.12 -1.05 4.37 -29.03 -0.13 -1.17 16 7 C 0.52 6.51 7.70 -10.99 -0.08 6.43 16 8 O -0.54 -9.01 15.50 5.56 0.09 -8.92 16 9 N -0.61 -7.44 2.25 -170.43 -0.38 -7.82 16 10 C 0.13 1.93 5.90 -3.22 -0.02 1.91 16 11 C 0.05 0.87 3.12 -65.41 -0.20 0.66 16 12 H 0.13 2.47 5.88 -51.93 -0.31 2.17 16 13 C -0.15 -2.03 5.54 -25.26 -0.14 -2.17 16 14 C -0.14 -1.56 5.52 -25.27 -0.14 -1.70 16 15 C 0.04 0.47 3.63 -65.38 -0.24 0.24 16 16 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 17 C 0.12 1.18 5.92 -2.46 -0.01 1.17 16 18 N -0.48 -7.35 4.77 -214.12 -1.02 -8.38 16 19 C 0.04 0.60 5.33 -4.97 -0.03 0.57 16 20 C 0.44 10.00 7.22 -10.98 -0.08 9.92 16 21 O -0.58 -14.98 14.03 5.55 0.08 -14.90 16 22 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 23 C -0.30 -8.19 9.68 -14.94 -0.14 -8.34 16 24 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 27 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.10 0.62 6.24 -52.48 -0.33 0.29 16 32 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.12 0.84 5.76 -52.48 -0.30 0.54 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 36 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.10 0.74 5.15 -51.93 -0.27 0.47 16 39 H 0.10 0.69 7.61 -51.93 -0.40 0.30 16 40 H 0.09 1.40 7.11 -51.93 -0.37 1.04 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 0.94 8.11 -51.93 -0.42 0.51 16 43 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 44 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 45 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.54 6.12 -51.93 -0.32 0.22 16 48 H 0.05 0.78 6.99 -51.93 -0.36 0.42 16 49 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 51 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -32.33 399.97 -9.26 -41.60 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -7.85 Total: 11.59 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.84 Total: 2.31 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.74 Total: -53.54 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.33 -9.26 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493922365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.810 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds