Wall clock time and date at job start Wed Apr 1 2020 04:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 C 1.53006 * 109.46708 * 119.99676 * 2 1 3 5 5 C 1.52998 * 109.46796 * 173.71638 * 4 2 1 6 6 H 1.08999 * 109.47179 * 53.59004 * 5 4 2 7 7 C 1.50703 * 109.47189 * 293.58996 * 5 4 2 8 8 N 1.34774 * 119.99859 * 71.00355 * 7 5 4 9 9 O 1.21280 * 119.99836 * 250.72638 * 7 5 4 10 10 C 1.50700 * 109.47364 * 173.59089 * 5 4 2 11 11 O 1.21282 * 119.99809 * 359.97438 * 10 5 4 12 12 N 1.34779 * 120.00304 * 180.02562 * 10 5 4 13 13 C 1.46493 * 119.99595 * 179.97438 * 12 10 5 14 14 C 1.50708 * 109.46984 * 179.97438 * 13 12 10 15 15 C 1.38233 * 119.99964 * 269.73004 * 14 13 12 16 16 C 1.38237 * 119.99776 * 179.76361 * 15 14 13 17 17 C 1.38238 * 119.99725 * 0.48357 * 16 15 14 18 18 C 1.50702 * 119.99734 * 179.76920 * 17 16 15 19 19 N 1.46504 * 109.47165 * 270.02382 * 18 17 16 20 20 C 1.36936 * 120.00118 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99758 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00012 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00017 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00033 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47050 * 59.99930 * 24 22 20 26 26 H 1.48497 * 109.47140 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46827 * 299.99936 * 24 22 20 28 28 C 1.38230 * 120.00506 * 359.78993 * 17 16 15 29 29 C 1.38237 * 119.99585 * 359.95432 * 28 17 16 30 30 H 1.08997 * 109.47219 * 300.00308 * 1 2 3 31 31 H 1.09002 * 109.46919 * 60.00395 * 1 2 3 32 32 H 1.08998 * 109.47145 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47219 * 239.99692 * 2 1 3 34 34 H 1.08997 * 109.47326 * 59.99757 * 3 2 1 35 35 H 1.08997 * 109.47038 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46902 * 299.99615 * 3 2 1 37 37 H 1.08995 * 109.47209 * 53.71733 * 4 2 1 38 38 H 1.08996 * 109.46989 * 293.71319 * 4 2 1 39 39 H 0.97006 * 120.00079 * 184.51745 * 8 7 5 40 40 H 0.97001 * 120.00509 * 4.50515 * 8 7 5 41 41 H 0.96993 * 119.99795 * 0.02562 * 12 10 5 42 42 H 1.09004 * 109.47670 * 299.99513 * 13 12 10 43 43 H 1.08999 * 109.47381 * 60.00045 * 13 12 10 44 44 H 1.07998 * 119.99803 * 359.97438 * 15 14 13 45 45 H 1.07996 * 119.99875 * 180.25274 * 16 15 14 46 46 H 1.09004 * 109.46816 * 30.02123 * 18 17 16 47 47 H 1.08999 * 109.47212 * 150.02028 * 18 17 16 48 48 H 0.96994 * 119.99519 * 359.97438 * 19 18 17 49 49 H 0.97007 * 119.99920 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.00385 * 179.97438 * 28 17 16 51 51 H 1.08000 * 119.99739 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5618 -0.8594 1.1730 6 1 4.0074 0.1203 1.0006 7 6 3.9260 -1.7833 0.0394 8 7 3.7642 -1.3808 -1.2366 9 8 4.3695 -2.8872 0.2755 10 6 4.0805 -1.4262 2.4694 11 8 3.3090 -1.6929 3.3664 12 7 5.4019 -1.6358 2.6325 13 6 5.9060 -2.1862 3.8930 14 6 7.4050 -2.3225 3.8178 15 6 7.9699 -3.4955 3.3535 16 6 9.3449 -3.6187 3.2799 17 6 10.1549 -2.5724 3.6800 18 6 11.6538 -2.7086 3.6047 19 7 12.1582 -3.2592 4.8652 20 6 13.5007 -3.4721 5.0309 21 1 14.1877 -3.2345 4.2321 22 6 13.9785 -3.9932 6.2254 23 7 13.1412 -4.2831 7.1985 24 14 15.8101 -4.2830 6.4516 25 1 16.5366 -2.9962 6.3055 26 1 16.0593 -4.8419 7.8046 27 1 16.2901 -5.2419 5.4243 28 6 9.5901 -1.4014 4.1496 29 6 8.2151 -1.2763 4.2182 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.5877 -1.7112 1.3074 38 1 1.7714 -0.1465 2.1357 39 1 3.9363 -1.9976 -1.9653 40 1 3.4756 -0.4744 -1.4264 41 1 6.0190 -1.4215 1.9155 42 1 5.6423 -1.5178 4.7127 43 1 5.4607 -3.1660 4.0655 44 1 7.3371 -4.3145 3.0451 45 1 9.7862 -4.5337 2.9133 46 1 11.9171 -3.3772 2.7850 47 1 12.0995 -1.7290 3.4319 48 1 11.5411 -3.4721 5.5826 49 1 13.4751 -4.6477 8.0332 50 1 10.2229 -0.5842 4.4626 51 1 7.7738 -0.3613 4.5847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495507056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:30 Heat of formation + Delta-G solvation = -56.017567 kcal Electronic energy + Delta-G solvation = -29601.462634 eV Core-core repulsion = 25500.186750 eV Total energy + Delta-G solvation = -4101.275884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08237 -39.45357 -38.76322 -37.16464 -35.48743 -34.29051 -33.97328 -32.30183 -31.64174 -30.66862 -30.05911 -27.74620 -27.18407 -25.42193 -24.17936 -22.51454 -22.43816 -22.05327 -20.79981 -20.46937 -20.16699 -18.13387 -17.64289 -17.26834 -16.90479 -16.50337 -15.74092 -15.55783 -15.39013 -15.01377 -14.83192 -14.70042 -14.53375 -14.36345 -14.25560 -13.79137 -13.36933 -13.18137 -13.15454 -13.08124 -12.77434 -12.70492 -12.58057 -12.31772 -12.19151 -12.00579 -11.79673 -11.44975 -11.27482 -11.23285 -11.05623 -10.83128 -10.69198 -10.58212 -10.40033 -10.15983 -10.08452 -10.07974 -9.76082 -9.19039 -8.89165 -8.63954 -8.39436 -6.93558 -5.75556 -3.05591 1.44219 1.69066 2.07558 2.26040 2.98275 3.14601 3.44691 3.48721 3.50219 4.00182 4.13862 4.21466 4.31690 4.34639 4.48522 4.62305 4.64308 4.72735 4.85354 5.01709 5.07956 5.11951 5.24793 5.26000 5.31380 5.38805 5.41492 5.41910 5.47867 5.58010 5.66154 5.68425 5.76116 5.78883 5.83170 5.90446 6.17284 6.21497 6.22653 6.24056 6.25888 6.51714 6.60009 6.67518 6.72388 6.75694 7.13443 7.25977 7.31897 7.68798 7.70613 7.99211 8.42053 9.53518 10.09755 10.45668 11.46774 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.001646 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.045908 B =17006.774572 C =17246.984293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.157 4.157 4 C -0.091 4.091 5 C -0.135 4.135 6 H 0.122 0.878 7 C 0.527 3.473 8 N -0.852 5.852 9 O -0.523 6.523 10 C 0.535 3.465 11 O -0.535 6.535 12 N -0.711 5.711 13 C 0.167 3.833 14 C -0.124 4.124 15 C -0.100 4.100 16 C -0.106 4.106 17 C -0.064 4.064 18 C 0.184 3.816 19 N -0.726 5.726 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.108 4.108 29 C -0.105 4.105 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.404 0.596 40 H 0.403 0.597 41 H 0.401 0.599 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.386 0.614 49 H 0.256 0.744 50 H 0.124 0.876 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.315 12.980 -19.277 35.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.214 4.214 4 C -0.129 4.129 5 C -0.160 4.160 6 H 0.140 0.860 7 C 0.310 3.690 8 N -0.419 5.419 9 O -0.398 6.398 10 C 0.319 3.681 11 O -0.411 6.411 12 N -0.361 5.361 13 C 0.044 3.956 14 C -0.125 4.125 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.065 4.065 18 C 0.057 3.943 19 N -0.371 5.371 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.126 4.126 29 C -0.123 4.123 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.235 0.765 40 H 0.235 0.765 41 H 0.235 0.765 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.142 0.858 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.404 12.084 -18.270 34.307 hybrid contribution 1.153 0.036 -0.325 1.199 sum -25.251 12.120 -18.595 33.620 Atomic orbital electron populations 1.21794 0.94349 1.02101 1.02080 1.21484 0.96927 0.96507 0.98362 1.21993 1.00828 0.95855 1.02698 1.21435 0.89711 1.02604 0.99176 1.21701 1.00581 1.00976 0.92713 0.86003 1.20139 0.77161 0.87617 0.84099 1.44150 1.72082 1.18089 1.07613 1.90858 1.43255 1.21474 1.84208 1.19708 0.82408 0.77971 0.87985 1.90718 1.56107 1.51296 1.42988 1.45972 1.07213 1.64894 1.17989 1.20172 0.89865 0.99790 0.85726 1.19674 0.93958 0.95320 1.03537 1.21025 0.95009 0.96932 0.98878 1.21128 0.92990 0.98645 0.99737 1.20383 0.97119 0.93254 0.95755 1.19704 0.86490 0.97085 0.90971 1.42328 1.05561 1.76634 1.12551 1.19199 0.83739 1.35709 0.98856 0.91125 1.24759 0.97780 1.01858 0.96413 1.69667 1.33174 1.49669 1.05412 0.86243 0.85002 0.77897 0.76873 1.21234 1.21654 1.21231 1.21102 0.94430 0.98039 0.99050 1.20974 0.93556 0.98010 0.99769 0.92323 0.92447 0.92499 0.90325 0.91935 0.92643 0.92176 0.90492 0.89303 0.76456 0.76543 0.76505 0.90643 0.90626 0.86232 0.85831 0.95416 0.95433 0.78037 0.93408 0.85848 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 2 C -0.11 -0.43 2.45 -90.61 -0.22 -0.65 16 3 C -0.16 -0.42 8.77 37.16 0.33 -0.09 16 4 C -0.09 -0.60 3.49 -26.73 -0.09 -0.69 16 5 C -0.14 -0.98 2.46 -92.92 -0.23 -1.21 16 6 H 0.12 0.52 6.34 -51.93 -0.33 0.19 16 7 C 0.53 4.24 7.02 -10.98 -0.08 4.16 16 8 N -0.85 -3.32 7.65 31.22 0.24 -3.08 16 9 O -0.52 -6.71 16.63 5.56 0.09 -6.62 16 10 C 0.54 6.07 6.56 -10.98 -0.07 6.00 16 11 O -0.53 -7.87 15.89 5.56 0.09 -7.79 16 12 N -0.71 -7.74 5.11 -61.47 -0.31 -8.05 16 13 C 0.17 2.03 5.80 -5.19 -0.03 2.00 16 14 C -0.12 -1.65 5.25 -104.62 -0.55 -2.20 16 15 C -0.10 -1.44 9.70 -39.58 -0.38 -1.83 16 16 C -0.11 -1.74 9.70 -39.58 -0.38 -2.13 16 17 C -0.06 -1.14 5.25 -104.62 -0.55 -1.69 16 18 C 0.18 3.82 6.38 -5.19 -0.03 3.78 16 19 N -0.73 -18.86 5.59 -61.08 -0.34 -19.20 16 20 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.34 5.50 -17.44 -0.10 -0.44 16 23 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 24 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C -0.11 -1.70 9.70 -39.58 -0.38 -2.09 16 29 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.23 4.86 -51.93 -0.25 -0.02 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.05 0.10 6.48 -51.93 -0.34 -0.23 16 36 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 39 H 0.40 1.31 8.93 -40.82 -0.36 0.94 16 40 H 0.40 0.54 6.60 -40.82 -0.27 0.27 16 41 H 0.40 3.87 8.35 -40.82 -0.34 3.53 16 42 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 44 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 46 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 47 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 48 H 0.39 10.70 7.66 -40.82 -0.31 10.39 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 51 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 418.43 15.07 6.31 6.31 Total: -1.00 -36.02 418.43 -9.27 -45.29 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.07 Total: 9.66 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.97 Total: -6.17 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.31 Total: -58.21 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.18 Total: -14.40 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.02 -9.27 -45.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495507056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.725 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds