Wall clock time and date at job start Wed Apr 1 2020 04:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 C 1.53006 * 109.46708 * 119.99676 * 2 1 3 5 5 C 1.52998 * 109.46796 * 173.71638 * 4 2 1 6 6 H 1.08999 * 109.47179 * 53.59004 * 5 4 2 7 7 C 1.50703 * 109.47189 * 293.58996 * 5 4 2 8 8 N 1.34774 * 119.99859 * 71.00355 * 7 5 4 9 9 O 1.21280 * 119.99836 * 250.72638 * 7 5 4 10 10 C 1.50700 * 109.47364 * 173.59089 * 5 4 2 11 11 O 1.21282 * 119.99809 * 359.97438 * 10 5 4 12 12 N 1.34779 * 120.00304 * 180.02562 * 10 5 4 13 13 C 1.46493 * 119.99595 * 179.97438 * 12 10 5 14 14 C 1.50708 * 109.46984 * 179.97438 * 13 12 10 15 15 C 1.38233 * 119.99964 * 269.73004 * 14 13 12 16 16 C 1.38237 * 119.99776 * 179.76361 * 15 14 13 17 17 C 1.38238 * 119.99725 * 0.48357 * 16 15 14 18 18 C 1.50702 * 119.99734 * 179.76920 * 17 16 15 19 19 N 1.46504 * 109.47165 * 270.02382 * 18 17 16 20 20 C 1.36936 * 120.00118 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99758 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00012 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00017 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00033 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47050 * 59.99930 * 24 22 20 26 26 H 1.48497 * 109.47140 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46827 * 299.99936 * 24 22 20 28 28 C 1.38230 * 120.00506 * 359.78993 * 17 16 15 29 29 C 1.38237 * 119.99585 * 359.95432 * 28 17 16 30 30 H 1.08997 * 109.47219 * 300.00308 * 1 2 3 31 31 H 1.09002 * 109.46919 * 60.00395 * 1 2 3 32 32 H 1.08998 * 109.47145 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47219 * 239.99692 * 2 1 3 34 34 H 1.08997 * 109.47326 * 59.99757 * 3 2 1 35 35 H 1.08997 * 109.47038 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46902 * 299.99615 * 3 2 1 37 37 H 1.08995 * 109.47209 * 53.71733 * 4 2 1 38 38 H 1.08996 * 109.46989 * 293.71319 * 4 2 1 39 39 H 0.97006 * 120.00079 * 184.51745 * 8 7 5 40 40 H 0.97001 * 120.00509 * 4.50515 * 8 7 5 41 41 H 0.96993 * 119.99795 * 0.02562 * 12 10 5 42 42 H 1.09004 * 109.47670 * 299.99513 * 13 12 10 43 43 H 1.08999 * 109.47381 * 60.00045 * 13 12 10 44 44 H 1.07998 * 119.99803 * 359.97438 * 15 14 13 45 45 H 1.07996 * 119.99875 * 180.25274 * 16 15 14 46 46 H 1.09004 * 109.46816 * 30.02123 * 18 17 16 47 47 H 1.08999 * 109.47212 * 150.02028 * 18 17 16 48 48 H 0.96994 * 119.99519 * 359.97438 * 19 18 17 49 49 H 0.97007 * 119.99920 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.00385 * 179.97438 * 28 17 16 51 51 H 1.08000 * 119.99739 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5618 -0.8594 1.1730 6 1 4.0074 0.1203 1.0006 7 6 3.9260 -1.7833 0.0394 8 7 3.7642 -1.3808 -1.2366 9 8 4.3695 -2.8872 0.2755 10 6 4.0805 -1.4262 2.4694 11 8 3.3090 -1.6929 3.3664 12 7 5.4019 -1.6358 2.6325 13 6 5.9060 -2.1862 3.8930 14 6 7.4050 -2.3225 3.8178 15 6 7.9699 -3.4955 3.3535 16 6 9.3449 -3.6187 3.2799 17 6 10.1549 -2.5724 3.6800 18 6 11.6538 -2.7086 3.6047 19 7 12.1582 -3.2592 4.8652 20 6 13.5007 -3.4721 5.0309 21 1 14.1877 -3.2345 4.2321 22 6 13.9785 -3.9932 6.2254 23 7 13.1412 -4.2831 7.1985 24 14 15.8101 -4.2830 6.4516 25 1 16.5366 -2.9962 6.3055 26 1 16.0593 -4.8419 7.8046 27 1 16.2901 -5.2419 5.4243 28 6 9.5901 -1.4014 4.1496 29 6 8.2151 -1.2763 4.2182 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.5877 -1.7112 1.3074 38 1 1.7714 -0.1465 2.1357 39 1 3.9363 -1.9976 -1.9653 40 1 3.4756 -0.4744 -1.4264 41 1 6.0190 -1.4215 1.9155 42 1 5.6423 -1.5178 4.7127 43 1 5.4607 -3.1660 4.0655 44 1 7.3371 -4.3145 3.0451 45 1 9.7862 -4.5337 2.9133 46 1 11.9171 -3.3772 2.7850 47 1 12.0995 -1.7290 3.4319 48 1 11.5411 -3.4721 5.5826 49 1 13.4751 -4.6477 8.0332 50 1 10.2229 -0.5842 4.4626 51 1 7.7738 -0.3613 4.5847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495507056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:29 Heat of formation + Delta-G solvation = -82.002669 kcal Electronic energy + Delta-G solvation = -29602.589433 eV Core-core repulsion = 25500.186750 eV Total energy + Delta-G solvation = -4102.402683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81860 -40.55442 -39.70871 -37.66975 -36.91714 -35.76092 -34.49613 -33.78341 -32.57544 -31.87099 -31.55981 -28.52796 -27.98210 -26.45511 -25.47007 -24.10765 -23.64311 -22.89071 -21.71627 -21.29820 -20.87082 -19.33159 -18.80489 -18.25755 -17.59125 -17.40830 -16.84324 -16.68159 -16.42850 -16.28070 -15.92061 -15.77869 -15.28219 -15.25626 -15.14857 -14.96862 -14.83773 -14.45200 -14.35881 -14.04747 -13.71054 -13.56300 -13.30831 -13.20169 -13.11562 -13.01754 -12.98446 -12.72938 -12.58620 -12.24574 -11.96585 -11.92978 -11.81078 -11.75241 -11.63217 -11.59883 -11.12440 -11.05464 -10.97789 -10.58067 -10.14447 -9.83803 -9.65807 -9.04063 -7.95826 -5.26585 0.22633 0.48699 1.40741 1.47196 1.48002 1.50843 1.57105 2.12714 2.54825 2.57179 2.86002 3.37091 3.48076 3.62744 3.68141 3.85485 3.88723 3.96464 4.02694 4.10570 4.11621 4.17360 4.23728 4.27395 4.43309 4.54543 4.66991 4.68016 4.73956 4.79121 4.88183 4.88383 4.92048 5.05660 5.07529 5.09570 5.11722 5.18064 5.30000 5.35038 5.43969 5.46224 5.46745 5.54210 5.58773 5.79182 5.82375 6.04333 6.24299 6.30323 6.44999 7.11589 7.22653 7.31050 8.03900 8.29321 9.27183 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.001646 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.045908 B =17006.774572 C =17246.984293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.157 4.157 4 C -0.088 4.088 5 C -0.127 4.127 6 H 0.160 0.840 7 C 0.528 3.472 8 N -0.827 5.827 9 O -0.577 6.577 10 C 0.528 3.472 11 O -0.574 6.574 12 N -0.705 5.705 13 C 0.171 3.829 14 C -0.110 4.110 15 C -0.101 4.101 16 C -0.116 4.116 17 C -0.086 4.086 18 C 0.186 3.814 19 N -0.739 5.739 20 C -0.252 4.252 21 H 0.079 0.921 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.978 3.022 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.277 1.277 28 C -0.113 4.113 29 C -0.095 4.095 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.411 0.589 40 H 0.419 0.581 41 H 0.409 0.591 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.029 0.971 47 H 0.034 0.966 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.127 0.873 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.833 15.021 -21.230 37.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.214 4.214 4 C -0.126 4.126 5 C -0.151 4.151 6 H 0.177 0.823 7 C 0.312 3.688 8 N -0.395 5.395 9 O -0.456 6.456 10 C 0.314 3.686 11 O -0.454 6.454 12 N -0.355 5.355 13 C 0.048 3.952 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.135 4.135 17 C -0.087 4.087 18 C 0.060 3.940 19 N -0.382 5.382 20 C -0.383 4.383 21 H 0.097 0.903 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.806 3.194 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.203 1.203 28 C -0.132 4.132 29 C -0.113 4.113 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.244 0.756 40 H 0.253 0.747 41 H 0.244 0.756 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.205 0.795 49 H 0.060 0.940 50 H 0.145 0.855 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.925 14.188 -20.328 36.599 hybrid contribution 1.178 -0.555 0.193 1.316 sum -25.747 13.633 -20.135 35.414 Atomic orbital electron populations 1.21820 0.94579 1.01639 1.02536 1.21444 0.96716 0.97239 0.97079 1.22014 1.01672 0.94623 1.03109 1.21408 0.89188 1.01523 1.00474 1.21699 1.00915 1.02131 0.90307 0.82320 1.20214 0.76561 0.86814 0.85228 1.43950 1.70168 1.18986 1.06377 1.90845 1.46086 1.23621 1.85049 1.20396 0.82027 0.77214 0.88924 1.90699 1.56945 1.53011 1.44705 1.45901 1.07473 1.64424 1.17668 1.20052 0.88792 0.99581 0.86750 1.19786 0.94569 0.94712 1.01996 1.21151 0.94299 0.97813 0.98713 1.21139 0.93795 0.98286 1.00274 1.20175 0.95391 0.94794 0.98312 1.19764 0.88821 0.96698 0.88690 1.42531 1.04764 1.76926 1.13955 1.19652 0.85087 1.34577 0.98978 0.90317 1.25628 1.02329 1.02398 0.96302 1.69838 1.35132 1.51204 1.05787 0.85150 0.79661 0.78090 0.76459 1.20111 1.22152 1.20305 1.21200 0.95583 0.97472 0.98942 1.21210 0.92508 0.99012 0.98566 0.92800 0.91078 0.93469 0.89230 0.92587 0.91309 0.90815 0.92973 0.90119 0.75618 0.74656 0.75570 0.89925 0.91824 0.85189 0.86292 0.95330 0.94851 0.79535 0.93967 0.85523 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 71.98 0.66 -0.31 16 2 C -0.11 -0.57 2.45 -10.79 -0.03 -0.59 16 3 C -0.16 -0.33 8.77 71.98 0.63 0.30 16 4 C -0.09 -1.07 3.49 30.60 0.11 -0.96 16 5 C -0.13 -1.61 2.46 -12.29 -0.03 -1.64 16 6 H 0.16 0.80 6.34 -2.39 -0.02 0.79 16 7 C 0.53 7.65 7.02 87.66 0.62 8.26 16 8 N -0.83 -4.24 7.65 -173.53 -1.33 -5.57 16 9 O -0.58 -14.52 16.63 -3.03 -0.05 -14.57 16 10 C 0.53 11.57 6.56 87.66 0.58 12.15 16 11 O -0.57 -17.01 15.89 -3.04 -0.05 -17.06 16 12 N -0.70 -14.44 5.11 -466.78 -2.39 -16.83 16 13 C 0.17 3.99 5.80 85.64 0.50 4.48 16 14 C -0.11 -2.78 5.25 -19.86 -0.10 -2.88 16 15 C -0.10 -2.87 9.70 22.27 0.22 -2.65 16 16 C -0.12 -3.82 9.70 22.27 0.22 -3.61 16 17 C -0.09 -3.04 5.25 -19.87 -0.10 -3.15 16 18 C 0.19 7.76 6.38 85.63 0.55 8.31 16 19 N -0.74 -38.97 5.59 -347.16 -1.94 -40.92 16 20 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 23 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 24 Si 0.98 46.58 29.55 68.60 2.03 48.60 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 C -0.11 -3.48 9.70 22.27 0.22 -3.26 16 29 C -0.09 -2.38 9.70 22.27 0.22 -2.16 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.26 4.86 -2.39 -0.01 0.24 16 34 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.07 -0.03 6.48 -2.39 -0.02 -0.05 16 36 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.13 7.90 -2.39 -0.02 1.11 16 39 H 0.41 1.64 8.93 -92.70 -0.83 0.81 16 40 H 0.42 -0.43 6.60 -92.71 -0.61 -1.04 16 41 H 0.41 7.14 8.35 -92.71 -0.77 6.36 16 42 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 43 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 44 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 45 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 46 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 47 H 0.03 1.35 8.09 -2.39 -0.02 1.33 16 48 H 0.37 21.24 7.66 -92.71 -0.71 20.53 16 49 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 50 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 51 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -79.85 418.43 0.15 -79.70 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -1.95 Total: 32.09 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.54 Total: -5.09 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -5.37 Total: -123.68 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.10 Total: -31.63 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.85 0.15 -79.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495507056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.300 kcal (2) G-P(sol) polarization free energy of solvation -79.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds