Wall clock time and date at job start Wed Apr 1 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46821 * 2 1 4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46964 * 305.55129 * 4 3 2 6 6 C 1.50698 * 109.47099 * 185.55589 * 4 3 2 7 7 O 1.21277 * 119.99994 * 241.92775 * 6 4 3 8 8 N 1.34781 * 120.00159 * 61.92412 * 6 4 3 9 9 C 1.47151 * 120.97796 * 5.18012 * 8 6 4 10 10 C 1.53716 * 108.15988 * 129.43111 * 9 8 6 11 11 O 1.42970 * 109.14669 * 52.53562 * 10 9 8 12 12 C 1.42961 * 114.16655 * 297.28913 * 11 10 9 13 13 H 1.09002 * 109.51192 * 302.65759 * 12 11 10 14 14 C 1.52995 * 109.55241 * 182.52748 * 12 11 10 15 15 N 1.46504 * 109.47071 * 65.23211 * 14 12 11 16 16 C 1.36936 * 119.99774 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00146 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99549 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99840 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00067 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47090 * 90.00302 * 20 18 16 22 22 H 1.48502 * 109.46883 * 209.99708 * 20 18 16 23 23 H 1.48499 * 109.47277 * 330.00302 * 20 18 16 24 24 C 1.47152 * 120.98079 * 185.46169 * 8 6 4 25 25 C 1.50695 * 109.47203 * 65.55291 * 4 3 2 26 26 C 1.38228 * 119.61615 * 85.02421 * 25 4 3 27 27 C 1.38628 * 119.15984 * 179.97438 * 26 25 4 28 28 C 1.38671 * 118.42222 * 0.02562 * 27 26 25 29 29 C 1.38183 * 119.16263 * 359.97438 * 28 27 26 30 30 N 1.31852 * 119.62081 * 265.00065 * 25 4 3 31 31 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47550 * 300.00184 * 1 2 3 33 33 H 1.08997 * 109.47253 * 60.00780 * 1 2 3 34 34 H 1.08998 * 109.47550 * 239.99816 * 2 1 3 35 35 H 1.09010 * 109.47184 * 119.99563 * 2 1 3 36 36 H 1.08998 * 109.47209 * 59.99607 * 3 2 1 37 37 H 1.08994 * 109.46980 * 299.99327 * 3 2 1 38 38 H 1.09002 * 109.68138 * 249.20494 * 9 8 6 39 39 H 1.09003 * 109.68454 * 9.76384 * 9 8 6 40 40 H 1.08997 * 109.65706 * 292.57242 * 10 9 8 41 41 H 1.09004 * 109.48615 * 172.39668 * 10 9 8 42 42 H 1.09005 * 109.46832 * 185.22892 * 14 12 11 43 43 H 1.08997 * 109.47214 * 305.22666 * 14 12 11 44 44 H 0.97000 * 119.99753 * 359.97438 * 15 14 12 45 45 H 0.96993 * 119.99622 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.68102 * 350.23593 * 24 8 6 47 47 H 1.09002 * 109.67979 * 110.79309 * 24 8 6 48 48 H 1.07998 * 120.42005 * 359.94942 * 26 25 4 49 49 H 1.08001 * 120.79007 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.42186 * 179.97438 * 28 27 26 51 51 H 1.08008 * 119.61961 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8452 0.8370 6 6 4.0722 2.8568 0.1382 7 8 4.7406 3.3514 -0.7446 8 7 3.7784 3.5719 1.2422 9 6 3.0664 2.9586 2.3746 10 6 3.8547 3.2643 3.6584 11 8 4.0863 4.6726 3.7423 12 6 4.8853 5.1987 2.6798 13 1 5.8438 4.6803 2.6541 14 6 5.1185 6.6936 2.9064 15 7 5.9202 6.8847 4.1177 16 6 6.2576 8.1484 4.5231 17 1 5.9332 9.0041 3.9497 18 6 7.0168 8.3295 5.6711 19 7 7.3407 9.5441 6.0611 20 14 7.5773 6.8493 6.6632 21 1 8.8973 6.3888 6.1623 22 1 7.6958 7.2286 8.0941 23 1 6.5847 5.7539 6.5219 24 6 4.1548 4.9905 1.3482 25 6 4.0728 0.8544 -1.2924 26 6 4.2027 1.6632 -2.4059 27 6 4.6667 1.1124 -3.5904 28 6 4.9837 -0.2375 -3.6110 29 6 4.8281 -0.9833 -2.4582 30 7 4.3843 -0.4255 -1.3486 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6765 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 2.0630 3.3781 2.4480 39 1 3.0043 1.8802 2.2287 40 1 4.8095 2.7390 3.6362 41 1 3.2794 2.9377 4.5248 42 1 5.6479 7.1126 2.0505 43 1 4.1591 7.1976 3.0224 44 1 6.2119 6.1161 4.6324 45 1 7.8715 9.6706 6.8631 46 1 4.8137 5.2581 0.5223 47 1 3.2591 5.6110 1.3200 48 1 3.9456 2.7108 -2.3538 49 1 4.7780 1.7199 -4.4764 50 1 5.3475 -0.7000 -4.5165 51 1 5.0731 -2.0352 -2.4658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502072604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:44 Heat of formation + Delta-G solvation = -21.106420 kcal Electronic energy + Delta-G solvation = -31223.212446 eV Core-core repulsion = 27123.450423 eV Total energy + Delta-G solvation = -4099.762023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31493 -40.03189 -38.50586 -36.30783 -35.18592 -34.59471 -32.79066 -32.50255 -32.12834 -30.65259 -29.67379 -28.24556 -26.12135 -25.17292 -23.82715 -23.57598 -22.96146 -21.99640 -21.31725 -20.87433 -19.44041 -17.79129 -17.58131 -17.16098 -16.65821 -16.36022 -16.16499 -15.73862 -15.68985 -15.21836 -15.03813 -14.79218 -14.36822 -14.28015 -14.03794 -13.86121 -13.68383 -13.27434 -13.23569 -13.14480 -12.93151 -12.70548 -12.54993 -12.41998 -12.17540 -11.94858 -11.74181 -11.50302 -11.44439 -11.24578 -11.10262 -10.97769 -10.85107 -10.52832 -10.20429 -10.10900 -10.02260 -9.77440 -9.63000 -9.56085 -9.16735 -8.89202 -8.69790 -7.21099 -5.74099 -3.09416 0.86113 1.09060 2.27457 2.55026 3.41310 3.46094 3.48283 3.55263 3.77331 3.83246 3.98688 4.48870 4.50669 4.54129 4.59005 4.63129 4.64756 4.72395 4.75442 4.87657 4.87878 4.92328 4.95880 5.07475 5.14670 5.18391 5.24898 5.28218 5.35046 5.44984 5.51523 5.52086 5.55373 5.55690 5.61922 5.71852 5.72984 5.75028 5.82062 5.91689 5.92583 5.97799 6.00970 6.17143 6.44420 6.47192 6.57816 7.06081 7.28496 7.70874 7.84204 8.00821 8.44564 9.23611 9.95989 10.16017 11.44179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002410 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.735084 B =11616.653668 C =12345.109786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.112 4.112 4 C -0.057 4.057 5 H 0.115 0.885 6 C 0.523 3.477 7 O -0.530 6.530 8 N -0.609 5.609 9 C 0.068 3.932 10 C 0.044 3.956 11 O -0.360 6.360 12 C 0.069 3.931 13 H 0.063 0.937 14 C 0.168 3.832 15 N -0.750 5.750 16 C -0.243 4.243 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.086 3.914 25 C 0.135 3.865 26 C -0.131 4.131 27 C -0.085 4.085 28 C -0.173 4.173 29 C 0.089 3.911 30 N -0.477 5.477 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.364 0.636 45 H 0.259 0.741 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.152 0.848 49 H 0.133 0.867 50 H 0.132 0.868 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.506 -24.515 -17.678 33.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.150 4.150 4 C -0.079 4.079 5 H 0.132 0.868 6 C 0.311 3.689 7 O -0.407 6.407 8 N -0.342 5.342 9 C -0.055 4.055 10 C -0.035 4.035 11 O -0.278 6.278 12 C 0.010 3.990 13 H 0.081 0.919 14 C 0.040 3.960 15 N -0.396 5.396 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.714 3.286 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.200 1.200 24 C -0.037 4.037 25 C -0.003 4.003 26 C -0.151 4.151 27 C -0.111 4.111 28 C -0.193 4.193 29 C -0.068 4.068 30 N -0.186 5.186 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.197 0.803 45 H 0.069 0.931 46 H 0.122 0.878 47 H 0.100 0.900 48 H 0.169 0.831 49 H 0.150 0.850 50 H 0.150 0.850 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.295 -24.388 -17.249 32.696 hybrid contribution 0.763 -0.716 -0.137 1.055 sum -12.533 -25.104 -17.387 33.008 Atomic orbital electron populations 1.21772 0.95636 1.01740 1.01837 1.21500 0.95663 0.95543 1.03007 1.21764 0.90761 0.98757 1.03716 1.20119 0.97606 0.93302 0.96850 0.86753 1.20315 0.79602 0.87487 0.81509 1.90673 1.38549 1.71817 1.39651 1.48090 1.57782 1.11801 1.16560 1.22771 0.96802 0.99307 0.86656 1.23039 0.99436 0.84005 0.96972 1.88152 1.71749 1.20565 1.47376 1.22864 0.93029 0.97533 0.85544 0.91890 1.20597 0.95590 0.88852 0.90933 1.42576 1.63727 1.05618 1.27699 1.19047 1.27037 0.84084 1.07136 0.89146 1.24658 1.00350 0.96040 0.98069 1.69705 1.43001 1.19344 1.26193 0.86544 0.78723 0.83360 0.80021 1.21185 1.21730 1.19985 1.22354 1.01375 0.80329 0.99618 1.20384 0.96349 0.89622 0.93926 1.22431 0.98195 1.02088 0.92380 1.21652 0.96210 0.94971 0.98267 1.22142 1.01850 0.95216 1.00058 1.22621 0.95979 1.00131 0.88111 1.67340 1.10728 1.11918 1.28577 0.92634 0.92564 0.92876 0.91535 0.91474 0.89984 0.91127 0.89876 0.88637 0.92787 0.87610 0.93741 0.94409 0.80316 0.93077 0.87757 0.90037 0.83062 0.84957 0.85043 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.81 5.72 -26.73 -0.15 -0.97 16 3 C -0.11 -0.81 4.26 -26.73 -0.11 -0.93 16 4 C -0.06 -0.53 1.68 -92.92 -0.16 -0.69 16 5 H 0.11 1.01 7.34 -51.93 -0.38 0.62 16 6 C 0.52 6.15 6.86 -10.98 -0.08 6.08 16 7 O -0.53 -7.77 12.50 5.56 0.07 -7.70 16 8 N -0.61 -6.77 3.01 -172.01 -0.52 -7.29 16 9 C 0.07 0.58 4.96 -3.31 -0.02 0.56 16 10 C 0.04 0.47 7.00 37.53 0.26 0.74 16 11 O -0.36 -5.69 10.34 -35.23 -0.36 -6.05 16 12 C 0.07 1.09 2.81 -26.58 -0.07 1.01 16 13 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 14 C 0.17 3.26 5.93 -4.04 -0.02 3.24 16 15 N -0.75 -18.37 5.36 -59.91 -0.32 -18.69 16 16 C -0.24 -7.03 10.47 -15.06 -0.16 -7.18 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.00 0.14 5.50 -17.42 -0.10 0.04 16 19 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 20 Si 0.88 22.62 27.73 -169.99 -4.71 17.90 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.27 -6.68 6.52 56.52 0.37 -6.31 16 24 C 0.09 1.11 5.94 -3.53 -0.02 1.09 16 25 C 0.14 1.46 4.92 -82.59 -0.41 1.06 16 26 C -0.13 -1.43 8.28 -39.44 -0.33 -1.76 16 27 C -0.08 -0.77 10.18 -39.28 -0.40 -1.17 16 28 C -0.17 -1.37 10.11 -39.44 -0.40 -1.77 16 29 C 0.09 0.78 11.18 -17.55 -0.20 0.58 16 30 N -0.48 -5.07 9.62 -9.47 -0.09 -5.16 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.55 6.91 -51.93 -0.36 0.20 16 35 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.51 5.41 -51.93 -0.28 0.22 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.63 7.96 -51.93 -0.41 0.22 16 39 H 0.10 0.59 5.22 -51.93 -0.27 0.32 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.36 8.85 5.53 -40.82 -0.23 8.63 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 46 H 0.10 1.42 7.06 -51.93 -0.37 1.05 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.15 1.77 5.87 -52.49 -0.31 1.46 16 49 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 51 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -35.38 400.39 -9.23 -44.61 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.12 Total: 5.96 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.98 Total: -0.61 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.15 Total: -60.15 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.29 Total: -13.75 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.38 -9.23 -44.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502072604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.504 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds