Wall clock time and date at job start Wed Apr 1 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46821 * 2 1 4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46964 * 305.55129 * 4 3 2 6 6 C 1.50698 * 109.47099 * 185.55589 * 4 3 2 7 7 O 1.21277 * 119.99994 * 241.92775 * 6 4 3 8 8 N 1.34781 * 120.00159 * 61.92412 * 6 4 3 9 9 C 1.47151 * 120.97796 * 5.18012 * 8 6 4 10 10 C 1.53716 * 108.15988 * 129.43111 * 9 8 6 11 11 O 1.42970 * 109.14669 * 52.53562 * 10 9 8 12 12 C 1.42961 * 114.16655 * 297.28913 * 11 10 9 13 13 H 1.09002 * 109.51192 * 302.65759 * 12 11 10 14 14 C 1.52995 * 109.55241 * 182.52748 * 12 11 10 15 15 N 1.46504 * 109.47071 * 65.23211 * 14 12 11 16 16 C 1.36936 * 119.99774 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00146 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99549 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99840 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00067 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47090 * 90.00302 * 20 18 16 22 22 H 1.48502 * 109.46883 * 209.99708 * 20 18 16 23 23 H 1.48499 * 109.47277 * 330.00302 * 20 18 16 24 24 C 1.47152 * 120.98079 * 185.46169 * 8 6 4 25 25 C 1.50695 * 109.47203 * 65.55291 * 4 3 2 26 26 C 1.38228 * 119.61615 * 85.02421 * 25 4 3 27 27 C 1.38628 * 119.15984 * 179.97438 * 26 25 4 28 28 C 1.38671 * 118.42222 * 0.02562 * 27 26 25 29 29 C 1.38183 * 119.16263 * 359.97438 * 28 27 26 30 30 N 1.31852 * 119.62081 * 265.00065 * 25 4 3 31 31 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47550 * 300.00184 * 1 2 3 33 33 H 1.08997 * 109.47253 * 60.00780 * 1 2 3 34 34 H 1.08998 * 109.47550 * 239.99816 * 2 1 3 35 35 H 1.09010 * 109.47184 * 119.99563 * 2 1 3 36 36 H 1.08998 * 109.47209 * 59.99607 * 3 2 1 37 37 H 1.08994 * 109.46980 * 299.99327 * 3 2 1 38 38 H 1.09002 * 109.68138 * 249.20494 * 9 8 6 39 39 H 1.09003 * 109.68454 * 9.76384 * 9 8 6 40 40 H 1.08997 * 109.65706 * 292.57242 * 10 9 8 41 41 H 1.09004 * 109.48615 * 172.39668 * 10 9 8 42 42 H 1.09005 * 109.46832 * 185.22892 * 14 12 11 43 43 H 1.08997 * 109.47214 * 305.22666 * 14 12 11 44 44 H 0.97000 * 119.99753 * 359.97438 * 15 14 12 45 45 H 0.96993 * 119.99622 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.68102 * 350.23593 * 24 8 6 47 47 H 1.09002 * 109.67979 * 110.79309 * 24 8 6 48 48 H 1.07998 * 120.42005 * 359.94942 * 26 25 4 49 49 H 1.08001 * 120.79007 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.42186 * 179.97438 * 28 27 26 51 51 H 1.08008 * 119.61961 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8452 0.8370 6 6 4.0722 2.8568 0.1382 7 8 4.7406 3.3514 -0.7446 8 7 3.7784 3.5719 1.2422 9 6 3.0664 2.9586 2.3746 10 6 3.8547 3.2643 3.6584 11 8 4.0863 4.6726 3.7423 12 6 4.8853 5.1987 2.6798 13 1 5.8438 4.6803 2.6541 14 6 5.1185 6.6936 2.9064 15 7 5.9202 6.8847 4.1177 16 6 6.2576 8.1484 4.5231 17 1 5.9332 9.0041 3.9497 18 6 7.0168 8.3295 5.6711 19 7 7.3407 9.5441 6.0611 20 14 7.5773 6.8493 6.6632 21 1 8.8973 6.3888 6.1623 22 1 7.6958 7.2286 8.0941 23 1 6.5847 5.7539 6.5219 24 6 4.1548 4.9905 1.3482 25 6 4.0728 0.8544 -1.2924 26 6 4.2027 1.6632 -2.4059 27 6 4.6667 1.1124 -3.5904 28 6 4.9837 -0.2375 -3.6110 29 6 4.8281 -0.9833 -2.4582 30 7 4.3843 -0.4255 -1.3486 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6765 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 2.0630 3.3781 2.4480 39 1 3.0043 1.8802 2.2287 40 1 4.8095 2.7390 3.6362 41 1 3.2794 2.9377 4.5248 42 1 5.6479 7.1126 2.0505 43 1 4.1591 7.1976 3.0224 44 1 6.2119 6.1161 4.6324 45 1 7.8715 9.6706 6.8631 46 1 4.8137 5.2581 0.5223 47 1 3.2591 5.6110 1.3200 48 1 3.9456 2.7108 -2.3538 49 1 4.7780 1.7199 -4.4764 50 1 5.3475 -0.7000 -4.5165 51 1 5.0731 -2.0352 -2.4658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502072604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:43 Heat of formation + Delta-G solvation = -44.950745 kcal Electronic energy + Delta-G solvation = -31224.246413 eV Core-core repulsion = 27123.450423 eV Total energy + Delta-G solvation = -4100.795991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13246 -40.86873 -39.52943 -37.08076 -36.69358 -35.76359 -34.02398 -33.41946 -33.06377 -32.26189 -30.38270 -29.34395 -27.42419 -25.91697 -24.85011 -24.46672 -24.03271 -23.20407 -22.44407 -21.71647 -20.30700 -19.76519 -18.50745 -17.98997 -17.58751 -17.28215 -17.00241 -16.83562 -16.47237 -16.30240 -16.05717 -16.01859 -15.64654 -15.35951 -14.92343 -14.79087 -14.57763 -14.51723 -14.29899 -14.17687 -13.93914 -13.84772 -13.75116 -13.42283 -13.13121 -12.88895 -12.85774 -12.67214 -12.40991 -12.32466 -12.09638 -12.06343 -11.97498 -11.85020 -11.65442 -11.50421 -11.20227 -11.01768 -10.88315 -10.55432 -10.38114 -9.86060 -9.65992 -9.32702 -8.03899 -5.37474 0.18018 0.39312 1.37091 1.39088 1.40029 1.48357 1.67358 2.47798 2.70444 2.86288 3.14690 3.24132 3.27979 3.40345 3.82671 3.85271 3.85737 3.92490 3.95238 4.03948 4.05904 4.08550 4.22395 4.24637 4.27228 4.29379 4.33548 4.43476 4.50203 4.64367 4.65220 4.69155 4.73466 4.77901 4.84556 4.90506 4.90752 4.95255 5.02163 5.05196 5.20319 5.25179 5.26675 5.33759 5.36859 5.49028 5.72781 5.80775 6.16992 6.19707 6.21856 6.92830 7.03640 7.05542 7.80832 8.00499 9.17408 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002410 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.735084 B =11616.653668 C =12345.109786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.105 4.105 4 C -0.048 4.048 5 H 0.124 0.876 6 C 0.521 3.479 7 O -0.564 6.564 8 N -0.608 5.608 9 C 0.069 3.931 10 C 0.035 3.965 11 O -0.387 6.387 12 C 0.084 3.916 13 H 0.053 0.947 14 C 0.163 3.837 15 N -0.754 5.754 16 C -0.235 4.235 17 H 0.060 0.940 18 C -0.064 4.064 19 N -0.982 5.982 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.253 1.253 24 C 0.095 3.905 25 C 0.120 3.880 26 C -0.153 4.153 27 C -0.094 4.094 28 C -0.169 4.169 29 C 0.080 3.920 30 N -0.492 5.492 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.052 0.948 41 H 0.132 0.868 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.136 0.864 49 H 0.149 0.851 50 H 0.162 0.838 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 -28.017 -17.857 36.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.143 4.143 4 C -0.070 4.070 5 H 0.142 0.858 6 C 0.310 3.690 7 O -0.443 6.443 8 N -0.340 5.340 9 C -0.052 4.052 10 C -0.042 4.042 11 O -0.306 6.306 12 C 0.025 3.975 13 H 0.071 0.929 14 C 0.036 3.964 15 N -0.400 5.400 16 C -0.366 4.366 17 H 0.078 0.922 18 C -0.255 4.255 19 N -0.633 5.633 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.178 1.178 24 C -0.029 4.029 25 C -0.018 4.018 26 C -0.173 4.173 27 C -0.120 4.120 28 C -0.188 4.188 29 C -0.077 4.077 30 N -0.202 5.202 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.143 0.857 40 H 0.070 0.930 41 H 0.150 0.850 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.199 0.801 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.154 0.846 49 H 0.167 0.833 50 H 0.180 0.820 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.450 -27.934 -17.451 35.967 hybrid contribution 1.075 0.372 -0.200 1.155 sum -13.375 -27.562 -17.651 35.357 Atomic orbital electron populations 1.21761 0.94842 1.02085 1.02136 1.21435 0.96245 0.94896 1.02538 1.21752 0.89144 0.99274 1.04096 1.20111 0.98801 0.91376 0.96710 0.85811 1.20769 0.78940 0.88253 0.81029 1.90665 1.40078 1.72676 1.40915 1.48136 1.57693 1.10976 1.17230 1.22973 0.96763 1.01034 0.84448 1.23368 1.00211 0.81355 0.99259 1.88093 1.71567 1.23495 1.47438 1.22500 0.93294 0.94640 0.87090 0.92875 1.20745 0.94593 0.92086 0.88955 1.42581 1.64308 1.03930 1.29173 1.19050 1.25968 0.85100 1.06490 0.92218 1.25503 1.01172 0.99171 0.99660 1.69882 1.44484 1.21925 1.27005 0.85398 0.78675 0.79935 0.77768 1.20529 1.21921 1.17796 1.22096 1.01313 0.81995 0.97449 1.20558 0.96881 0.89932 0.94384 1.22422 0.99688 1.01605 0.93570 1.21954 0.95774 0.95963 0.98304 1.22474 1.00741 0.94606 1.01016 1.23181 0.95153 1.01478 0.87920 1.67372 1.11433 1.11748 1.29598 0.92302 0.91562 0.93285 0.93228 0.90707 0.88343 0.91963 0.88094 0.85719 0.92985 0.85032 0.93429 0.94552 0.80052 0.93264 0.88864 0.88986 0.84609 0.83340 0.82031 0.80249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.11 -1.31 5.72 30.59 0.18 -1.13 16 3 C -0.10 -1.31 4.26 30.60 0.13 -1.18 16 4 C -0.05 -0.83 1.68 -12.29 -0.02 -0.85 16 5 H 0.12 1.88 7.34 -2.38 -0.02 1.86 16 6 C 0.52 11.78 6.86 87.66 0.60 12.38 16 7 O -0.56 -16.74 12.50 -3.02 -0.04 -16.77 16 8 N -0.61 -12.49 3.01 -816.52 -2.46 -14.95 16 9 C 0.07 0.97 4.96 86.50 0.43 1.40 16 10 C 0.03 0.66 7.00 72.22 0.51 1.16 16 11 O -0.39 -11.48 10.34 -148.98 -1.54 -13.02 16 12 C 0.08 2.56 2.81 30.69 0.09 2.65 16 13 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 14 C 0.16 6.32 5.93 86.38 0.51 6.83 16 15 N -0.75 -36.81 5.36 -343.45 -1.84 -38.65 16 16 C -0.24 -13.84 10.47 84.04 0.88 -12.96 16 17 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 18 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 19 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16 20 Si 0.96 46.83 27.73 68.60 1.90 48.73 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16 24 C 0.09 2.37 5.94 86.36 0.51 2.89 16 25 C 0.12 2.51 4.92 42.55 0.21 2.72 16 26 C -0.15 -3.34 8.28 22.36 0.19 -3.16 16 27 C -0.09 -1.62 10.18 22.47 0.23 -1.40 16 28 C -0.17 -2.35 10.11 22.36 0.23 -2.12 16 29 C 0.08 1.24 11.18 84.67 0.95 2.19 16 30 N -0.49 -9.81 9.62 -183.89 -1.77 -11.58 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.76 6.91 -2.39 -0.02 0.74 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.10 0.89 5.41 -2.39 -0.01 0.87 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.13 7.96 -2.39 -0.02 1.11 16 39 H 0.12 1.03 5.22 -2.39 -0.01 1.02 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.37 17.38 5.53 -92.71 -0.51 16.86 16 45 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 46 H 0.09 2.55 7.06 -2.39 -0.02 2.54 16 47 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.14 3.33 5.87 -2.91 -0.02 3.31 16 49 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 50 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 51 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -78.59 400.39 1.71 -76.88 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.36 Total: 27.85 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 6.79 Total: 5.32 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.76 Total: -128.99 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.58 Total: -29.79 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -78.59 1.71 -76.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502072604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.927 kcal (2) G-P(sol) polarization free energy of solvation -78.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds