Wall clock time and date at job start Wed Apr 1 2020 05:18:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53004 * 109.46821 * 2 1
4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1
5 5 H 1.09005 * 109.46964 * 305.55129 * 4 3 2
6 6 C 1.50698 * 109.47099 * 185.55589 * 4 3 2
7 7 O 1.21277 * 119.99994 * 241.92775 * 6 4 3
8 8 N 1.34781 * 120.00159 * 61.92412 * 6 4 3
9 9 C 1.47151 * 120.97796 * 5.18012 * 8 6 4
10 10 C 1.53716 * 108.15988 * 129.43111 * 9 8 6
11 11 O 1.42970 * 109.14669 * 52.53562 * 10 9 8
12 12 C 1.42961 * 114.16655 * 297.28913 * 11 10 9
13 13 H 1.09002 * 109.51192 * 302.65759 * 12 11 10
14 14 C 1.52995 * 109.55241 * 182.52748 * 12 11 10
15 15 N 1.46504 * 109.47071 * 65.23211 * 14 12 11
16 16 C 1.36936 * 119.99774 * 179.97438 * 15 14 12
17 17 H 1.07994 * 120.00146 * 359.97438 * 16 15 14
18 18 C 1.38819 * 119.99549 * 179.97438 * 16 15 14
19 19 N 1.31626 * 119.99840 * 180.02562 * 18 16 15
20 20 Si 1.86798 * 120.00067 * 359.97438 * 18 16 15
21 21 H 1.48503 * 109.47090 * 90.00302 * 20 18 16
22 22 H 1.48502 * 109.46883 * 209.99708 * 20 18 16
23 23 H 1.48499 * 109.47277 * 330.00302 * 20 18 16
24 24 C 1.47152 * 120.98079 * 185.46169 * 8 6 4
25 25 C 1.50695 * 109.47203 * 65.55291 * 4 3 2
26 26 C 1.38228 * 119.61615 * 85.02421 * 25 4 3
27 27 C 1.38628 * 119.15984 * 179.97438 * 26 25 4
28 28 C 1.38671 * 118.42222 * 0.02562 * 27 26 25
29 29 C 1.38183 * 119.16263 * 359.97438 * 28 27 26
30 30 N 1.31852 * 119.62081 * 265.00065 * 25 4 3
31 31 H 1.09004 * 109.46782 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47550 * 300.00184 * 1 2 3
33 33 H 1.08997 * 109.47253 * 60.00780 * 1 2 3
34 34 H 1.08998 * 109.47550 * 239.99816 * 2 1 3
35 35 H 1.09010 * 109.47184 * 119.99563 * 2 1 3
36 36 H 1.08998 * 109.47209 * 59.99607 * 3 2 1
37 37 H 1.08994 * 109.46980 * 299.99327 * 3 2 1
38 38 H 1.09002 * 109.68138 * 249.20494 * 9 8 6
39 39 H 1.09003 * 109.68454 * 9.76384 * 9 8 6
40 40 H 1.08997 * 109.65706 * 292.57242 * 10 9 8
41 41 H 1.09004 * 109.48615 * 172.39668 * 10 9 8
42 42 H 1.09005 * 109.46832 * 185.22892 * 14 12 11
43 43 H 1.08997 * 109.47214 * 305.22666 * 14 12 11
44 44 H 0.97000 * 119.99753 * 359.97438 * 15 14 12
45 45 H 0.96993 * 119.99622 * 180.02562 * 19 18 16
46 46 H 1.08996 * 109.68102 * 350.23593 * 24 8 6
47 47 H 1.09002 * 109.67979 * 110.79309 * 24 8 6
48 48 H 1.07998 * 120.42005 * 359.94942 * 26 25 4
49 49 H 1.08001 * 120.79007 * 179.97438 * 27 26 25
50 50 H 1.07997 * 120.42186 * 179.97438 * 28 27 26
51 51 H 1.08008 * 119.61961 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 1 3.9329 0.8452 0.8370
6 6 4.0722 2.8568 0.1382
7 8 4.7406 3.3514 -0.7446
8 7 3.7784 3.5719 1.2422
9 6 3.0664 2.9586 2.3746
10 6 3.8547 3.2643 3.6584
11 8 4.0863 4.6726 3.7423
12 6 4.8853 5.1987 2.6798
13 1 5.8438 4.6803 2.6541
14 6 5.1185 6.6936 2.9064
15 7 5.9202 6.8847 4.1177
16 6 6.2576 8.1484 4.5231
17 1 5.9332 9.0041 3.9497
18 6 7.0168 8.3295 5.6711
19 7 7.3407 9.5441 6.0611
20 14 7.5773 6.8493 6.6632
21 1 8.8973 6.3888 6.1623
22 1 7.6958 7.2286 8.0941
23 1 6.5847 5.7539 6.5219
24 6 4.1548 4.9905 1.3482
25 6 4.0728 0.8544 -1.2924
26 6 4.2027 1.6632 -2.4059
27 6 4.6667 1.1124 -3.5904
28 6 4.9837 -0.2375 -3.6110
29 6 4.8281 -0.9833 -2.4582
30 7 4.3843 -0.4255 -1.3486
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3633 0.5137 -0.8900
34 1 1.8934 -0.5138 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 1.6765 1.9564 0.8899
37 1 1.6766 1.9563 -0.8900
38 1 2.0630 3.3781 2.4480
39 1 3.0043 1.8802 2.2287
40 1 4.8095 2.7390 3.6362
41 1 3.2794 2.9377 4.5248
42 1 5.6479 7.1126 2.0505
43 1 4.1591 7.1976 3.0224
44 1 6.2119 6.1161 4.6324
45 1 7.8715 9.6706 6.8631
46 1 4.8137 5.2581 0.5223
47 1 3.2591 5.6110 1.3200
48 1 3.9456 2.7108 -2.3538
49 1 4.7780 1.7199 -4.4764
50 1 5.3475 -0.7000 -4.5165
51 1 5.0731 -2.0352 -2.4658
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001502072604.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:18:43
Heat of formation + Delta-G solvation = -44.950745 kcal
Electronic energy + Delta-G solvation = -31224.246413 eV
Core-core repulsion = 27123.450423 eV
Total energy + Delta-G solvation = -4100.795991 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.13246 -40.86873 -39.52943 -37.08076 -36.69358 -35.76359 -34.02398 -33.41946
-33.06377 -32.26189 -30.38270 -29.34395 -27.42419 -25.91697 -24.85011 -24.46672
-24.03271 -23.20407 -22.44407 -21.71647 -20.30700 -19.76519 -18.50745 -17.98997
-17.58751 -17.28215 -17.00241 -16.83562 -16.47237 -16.30240 -16.05717 -16.01859
-15.64654 -15.35951 -14.92343 -14.79087 -14.57763 -14.51723 -14.29899 -14.17687
-13.93914 -13.84772 -13.75116 -13.42283 -13.13121 -12.88895 -12.85774 -12.67214
-12.40991 -12.32466 -12.09638 -12.06343 -11.97498 -11.85020 -11.65442 -11.50421
-11.20227 -11.01768 -10.88315 -10.55432 -10.38114 -9.86060 -9.65992 -9.32702
-8.03899 -5.37474 0.18018 0.39312 1.37091 1.39088 1.40029 1.48357
1.67358 2.47798 2.70444 2.86288 3.14690 3.24132 3.27979 3.40345
3.82671 3.85271 3.85737 3.92490 3.95238 4.03948 4.05904 4.08550
4.22395 4.24637 4.27228 4.29379 4.33548 4.43476 4.50203 4.64367
4.65220 4.69155 4.73466 4.77901 4.84556 4.90506 4.90752 4.95255
5.02163 5.05196 5.20319 5.25179 5.26675 5.33759 5.36859 5.49028
5.72781 5.80775 6.16992 6.19707 6.21856 6.92830 7.03640 7.05542
7.80832 8.00499 9.17408
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016212 B = 0.002410 C = 0.002268
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1726.735084 B =11616.653668 C =12345.109786
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.114 4.114
3 C -0.105 4.105
4 C -0.048 4.048
5 H 0.124 0.876
6 C 0.521 3.479
7 O -0.564 6.564
8 N -0.608 5.608
9 C 0.069 3.931
10 C 0.035 3.965
11 O -0.387 6.387
12 C 0.084 3.916
13 H 0.053 0.947
14 C 0.163 3.837
15 N -0.754 5.754
16 C -0.235 4.235
17 H 0.060 0.940
18 C -0.064 4.064
19 N -0.982 5.982
20 Si 0.955 3.045
21 H -0.279 1.279
22 H -0.293 1.293
23 H -0.253 1.253
24 C 0.095 3.905
25 C 0.120 3.880
26 C -0.153 4.153
27 C -0.094 4.094
28 C -0.169 4.169
29 C 0.080 3.920
30 N -0.492 5.492
31 H 0.058 0.942
32 H 0.065 0.935
33 H 0.048 0.952
34 H 0.049 0.951
35 H 0.074 0.926
36 H 0.098 0.902
37 H 0.062 0.938
38 H 0.101 0.899
39 H 0.125 0.875
40 H 0.052 0.948
41 H 0.132 0.868
42 H 0.048 0.952
43 H 0.036 0.964
44 H 0.366 0.634
45 H 0.259 0.741
46 H 0.093 0.907
47 H 0.092 0.908
48 H 0.136 0.864
49 H 0.149 0.851
50 H 0.162 0.838
51 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.616 -28.017 -17.857 36.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.151 4.151
3 C -0.143 4.143
4 C -0.070 4.070
5 H 0.142 0.858
6 C 0.310 3.690
7 O -0.443 6.443
8 N -0.340 5.340
9 C -0.052 4.052
10 C -0.042 4.042
11 O -0.306 6.306
12 C 0.025 3.975
13 H 0.071 0.929
14 C 0.036 3.964
15 N -0.400 5.400
16 C -0.366 4.366
17 H 0.078 0.922
18 C -0.255 4.255
19 N -0.633 5.633
20 Si 0.782 3.218
21 H -0.205 1.205
22 H -0.219 1.219
23 H -0.178 1.178
24 C -0.029 4.029
25 C -0.018 4.018
26 C -0.173 4.173
27 C -0.120 4.120
28 C -0.188 4.188
29 C -0.077 4.077
30 N -0.202 5.202
31 H 0.077 0.923
32 H 0.084 0.916
33 H 0.067 0.933
34 H 0.068 0.932
35 H 0.093 0.907
36 H 0.117 0.883
37 H 0.080 0.920
38 H 0.119 0.881
39 H 0.143 0.857
40 H 0.070 0.930
41 H 0.150 0.850
42 H 0.066 0.934
43 H 0.054 0.946
44 H 0.199 0.801
45 H 0.067 0.933
46 H 0.111 0.889
47 H 0.110 0.890
48 H 0.154 0.846
49 H 0.167 0.833
50 H 0.180 0.820
51 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges -14.450 -27.934 -17.451 35.967
hybrid contribution 1.075 0.372 -0.200 1.155
sum -13.375 -27.562 -17.651 35.357
Atomic orbital electron populations
1.21761 0.94842 1.02085 1.02136 1.21435 0.96245 0.94896 1.02538
1.21752 0.89144 0.99274 1.04096 1.20111 0.98801 0.91376 0.96710
0.85811 1.20769 0.78940 0.88253 0.81029 1.90665 1.40078 1.72676
1.40915 1.48136 1.57693 1.10976 1.17230 1.22973 0.96763 1.01034
0.84448 1.23368 1.00211 0.81355 0.99259 1.88093 1.71567 1.23495
1.47438 1.22500 0.93294 0.94640 0.87090 0.92875 1.20745 0.94593
0.92086 0.88955 1.42581 1.64308 1.03930 1.29173 1.19050 1.25968
0.85100 1.06490 0.92218 1.25503 1.01172 0.99171 0.99660 1.69882
1.44484 1.21925 1.27005 0.85398 0.78675 0.79935 0.77768 1.20529
1.21921 1.17796 1.22096 1.01313 0.81995 0.97449 1.20558 0.96881
0.89932 0.94384 1.22422 0.99688 1.01605 0.93570 1.21954 0.95774
0.95963 0.98304 1.22474 1.00741 0.94606 1.01016 1.23181 0.95153
1.01478 0.87920 1.67372 1.11433 1.11748 1.29598 0.92302 0.91562
0.93285 0.93228 0.90707 0.88343 0.91963 0.88094 0.85719 0.92985
0.85032 0.93429 0.94552 0.80052 0.93264 0.88864 0.88986 0.84609
0.83340 0.82031 0.80249
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16
2 C -0.11 -1.31 5.72 30.59 0.18 -1.13 16
3 C -0.10 -1.31 4.26 30.60 0.13 -1.18 16
4 C -0.05 -0.83 1.68 -12.29 -0.02 -0.85 16
5 H 0.12 1.88 7.34 -2.38 -0.02 1.86 16
6 C 0.52 11.78 6.86 87.66 0.60 12.38 16
7 O -0.56 -16.74 12.50 -3.02 -0.04 -16.77 16
8 N -0.61 -12.49 3.01 -816.52 -2.46 -14.95 16
9 C 0.07 0.97 4.96 86.50 0.43 1.40 16
10 C 0.03 0.66 7.00 72.22 0.51 1.16 16
11 O -0.39 -11.48 10.34 -148.98 -1.54 -13.02 16
12 C 0.08 2.56 2.81 30.69 0.09 2.65 16
13 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
14 C 0.16 6.32 5.93 86.38 0.51 6.83 16
15 N -0.75 -36.81 5.36 -343.45 -1.84 -38.65 16
16 C -0.24 -13.84 10.47 84.04 0.88 -12.96 16
17 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16
18 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16
19 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16
20 Si 0.96 46.83 27.73 68.60 1.90 48.73 16
21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16
22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16
23 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16
24 C 0.09 2.37 5.94 86.36 0.51 2.89 16
25 C 0.12 2.51 4.92 42.55 0.21 2.72 16
26 C -0.15 -3.34 8.28 22.36 0.19 -3.16 16
27 C -0.09 -1.62 10.18 22.47 0.23 -1.40 16
28 C -0.17 -2.35 10.11 22.36 0.23 -2.12 16
29 C 0.08 1.24 11.18 84.67 0.95 2.19 16
30 N -0.49 -9.81 9.62 -183.89 -1.77 -11.58 16
31 H 0.06 0.52 8.14 -2.38 -0.02 0.51 16
32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
34 H 0.05 0.76 6.91 -2.39 -0.02 0.74 16
35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
36 H 0.10 0.89 5.41 -2.39 -0.01 0.87 16
37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
38 H 0.10 1.13 7.96 -2.39 -0.02 1.11 16
39 H 0.12 1.03 5.22 -2.39 -0.01 1.02 16
40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
41 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16
42 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16
43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
44 H 0.37 17.38 5.53 -92.71 -0.51 16.86 16
45 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16
46 H 0.09 2.55 7.06 -2.39 -0.02 2.54 16
47 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
48 H 0.14 3.33 5.87 -2.91 -0.02 3.31 16
49 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16
50 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16
51 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16
Total: -1.00 -78.59 400.39 1.71 -76.88
By element:
Atomic # 1 Polarization: 27.49 SS G_CDS: 0.36 Total: 27.85 kcal
Atomic # 6 Polarization: -1.47 SS G_CDS: 6.79 Total: 5.32 kcal
Atomic # 7 Polarization: -123.23 SS G_CDS: -5.76 Total: -128.99 kcal
Atomic # 8 Polarization: -28.22 SS G_CDS: -1.58 Total: -29.79 kcal
Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal
Total: -78.59 1.71 -76.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001502072604.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.927 kcal
(2) G-P(sol) polarization free energy of solvation -78.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.658 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds