Wall clock time and date at job start Wed Apr 1 2020 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 C 1.53001 * 109.47758 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47413 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47189 * 54.99719 * 5 4 3 7 7 C 1.52999 * 109.47197 * 175.00087 * 5 4 3 8 8 N 1.46507 * 109.47085 * 174.99896 * 7 5 4 9 9 C 1.36934 * 119.99578 * 179.97438 * 8 7 5 10 10 H 1.07992 * 120.00493 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99601 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99876 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00101 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47095 * 89.99642 * 13 11 9 15 15 H 1.48502 * 109.47384 * 209.99683 * 13 11 9 16 16 H 1.48497 * 109.47365 * 330.00226 * 13 11 9 17 17 N 1.46506 * 109.47182 * 295.00131 * 5 4 3 18 18 C 1.34773 * 119.99969 * 84.72073 * 17 5 4 19 19 O 1.21550 * 120.00098 * 0.02562 * 18 17 5 20 20 C 1.47926 * 119.99997 * 179.97438 * 18 17 5 21 21 C 1.39463 * 119.71658 * 179.72566 * 20 18 17 22 22 C 1.38416 * 119.06610 * 179.75256 * 21 20 18 23 23 C 1.38698 * 118.72348 * 0.37784 * 22 21 20 24 24 C 1.39543 * 119.04125 * 359.95341 * 23 22 21 25 25 N 1.31304 * 120.84496 * 359.84391 * 24 23 22 26 26 O 1.35521 * 121.72262 * 180.23844 * 23 22 21 27 27 C 1.42879 * 117.75331 * 342.66106 * 26 23 22 28 28 C 1.53400 * 108.52770 * 49.26390 * 27 26 23 29 29 C 1.50493 * 119.62215 * 180.02562 * 22 21 20 30 30 H 1.08996 * 109.46905 * 60.00225 * 1 2 3 31 31 H 1.09005 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47388 * 300.00034 * 1 2 3 33 33 H 1.08998 * 109.47388 * 239.99966 * 2 1 3 34 34 H 1.09007 * 109.47344 * 119.99962 * 2 1 3 35 35 H 1.09003 * 109.47281 * 59.99762 * 3 2 1 36 36 H 1.09007 * 109.47346 * 300.00349 * 3 2 1 37 37 H 1.08998 * 109.47116 * 59.99933 * 4 3 2 38 38 H 1.08996 * 109.46851 * 299.99941 * 4 3 2 39 39 H 1.08997 * 109.46838 * 294.99742 * 7 5 4 40 40 H 1.08991 * 109.47160 * 54.99850 * 7 5 4 41 41 H 0.96998 * 119.99847 * 0.02562 * 8 7 5 42 42 H 0.96997 * 119.99904 * 180.02562 * 12 11 9 43 43 H 0.97005 * 119.99811 * 265.00126 * 17 5 4 44 44 H 1.08001 * 120.47175 * 0.02562 * 21 20 18 45 45 H 1.08003 * 119.57889 * 179.86549 * 24 23 22 46 46 H 1.08998 * 109.63303 * 289.54485 * 27 26 23 47 47 H 1.09008 * 109.78561 * 169.06632 * 27 26 23 48 48 H 1.09006 * 109.68500 * 175.61932 * 28 27 26 49 49 H 1.08995 * 109.72084 * 55.06790 * 28 27 26 50 50 H 1.08998 * 109.46039 * 282.65237 * 29 22 21 51 51 H 1.08998 * 109.46417 * 42.62773 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 5.6048 2.8868 0.1276 8 7 6.1030 4.2594 0.0084 9 6 7.4468 4.5095 0.0913 10 1 8.1393 3.6950 0.2440 11 6 7.9189 5.8099 -0.0222 12 7 9.2106 6.0503 0.0569 13 14 6.7212 7.2187 -0.2871 14 1 6.2886 7.7547 1.0285 15 1 7.3864 8.2944 -1.0653 16 1 5.5363 6.7270 -1.0350 17 7 3.6929 3.5404 -1.2505 18 6 2.4736 4.1024 -1.3679 19 8 1.6952 4.0659 -0.4350 20 6 2.0830 4.7646 -2.6316 21 6 0.8176 5.3392 -2.7486 22 6 0.4681 5.9600 -3.9354 23 6 1.3887 5.9818 -4.9726 24 6 2.6337 5.3799 -4.7860 25 7 2.9382 4.8020 -3.6469 26 8 1.1122 6.5767 -6.1584 27 6 -0.2570 6.8490 -6.4629 28 6 -0.8926 7.5565 -5.2592 29 6 -0.8939 6.5847 -4.0751 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9338 0.9286 -0.8891 38 1 3.9330 0.9289 0.8908 39 1 5.8894 2.4799 1.0979 40 1 6.0357 2.2739 -0.6639 41 1 5.4810 4.9909 -0.1284 42 1 9.5405 6.9591 -0.0220 43 1 4.3128 3.5662 -1.9963 44 1 0.1219 5.3043 -1.9233 45 1 3.3564 5.3899 -5.5886 46 1 -0.7820 5.9138 -6.6571 47 1 -0.3189 7.4927 -7.3404 48 1 -1.9164 7.8429 -5.5002 49 1 -0.3129 8.4441 -5.0061 50 1 -1.6355 5.8043 -4.2459 51 1 -1.1404 7.1263 -3.1619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506558648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:34 Heat of formation + Delta-G solvation = -45.672294 kcal Electronic energy + Delta-G solvation = -31131.215034 eV Core-core repulsion = 27030.387755 eV Total energy + Delta-G solvation = -4100.827279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43879 -39.92060 -38.42819 -36.55573 -35.06469 -34.96359 -33.57313 -32.18063 -31.46783 -30.93302 -30.30693 -27.57154 -26.52502 -25.18902 -24.12042 -23.54726 -22.28050 -21.85345 -20.72713 -20.49908 -19.92913 -18.22317 -18.11187 -17.65168 -16.98273 -16.25146 -15.94515 -15.61886 -15.13146 -14.90847 -14.85763 -14.56349 -14.46034 -14.15478 -13.98327 -13.86537 -13.74302 -13.40712 -13.09565 -13.01495 -12.74596 -12.72222 -12.51575 -12.13540 -12.03198 -11.94093 -11.43096 -11.39254 -11.32030 -11.18721 -10.97625 -10.87156 -10.82164 -10.35688 -10.28376 -10.12465 -10.06896 -9.76462 -9.59966 -9.57190 -8.89988 -8.78976 -8.57362 -7.22010 -5.74715 -3.10160 0.56359 0.92441 2.68569 2.84349 3.31174 3.41523 3.46799 3.48708 3.76910 4.04725 4.10983 4.16277 4.29515 4.37310 4.62610 4.66372 4.77414 4.81628 4.90292 4.99467 5.01648 5.04776 5.16658 5.19927 5.33098 5.35403 5.41222 5.46587 5.48672 5.55583 5.56901 5.66705 5.75606 5.78816 5.82962 5.87009 5.92212 6.00276 6.05608 6.10061 6.18006 6.21310 6.42783 6.45387 6.59951 6.65087 6.85198 6.89742 7.53971 7.87826 8.00868 8.41087 8.44506 9.23222 9.95802 10.15205 11.43573 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007010 B = 0.004041 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.614545 B = 6926.938416 C =10150.407925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.132 3.868 6 H 0.089 0.911 7 C 0.149 3.851 8 N -0.754 5.754 9 C -0.244 4.244 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.880 3.120 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.276 1.276 17 N -0.692 5.692 18 C 0.573 3.427 19 O -0.538 6.538 20 C 0.046 3.954 21 C -0.074 4.074 22 C -0.133 4.133 23 C 0.101 3.899 24 C 0.083 3.917 25 N -0.419 5.419 26 O -0.304 6.304 27 C 0.058 3.942 28 C -0.161 4.161 29 C -0.080 4.080 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.414 0.586 44 H 0.150 0.850 45 H 0.172 0.828 46 H 0.067 0.933 47 H 0.112 0.888 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.917 -3.933 -11.874 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.028 3.972 6 H 0.107 0.893 7 C 0.022 3.978 8 N -0.401 5.401 9 C -0.373 4.373 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.581 5.581 13 Si 0.711 3.289 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.202 1.202 17 N -0.343 5.343 18 C 0.357 3.643 19 O -0.416 6.416 20 C -0.091 4.091 21 C -0.095 4.095 22 C -0.141 4.141 23 C 0.052 3.948 24 C -0.080 4.080 25 N -0.131 5.131 26 O -0.216 6.216 27 C -0.017 4.017 28 C -0.199 4.199 29 C -0.117 4.117 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.251 0.749 44 H 0.168 0.832 45 H 0.189 0.811 46 H 0.086 0.914 47 H 0.130 0.870 48 H 0.108 0.892 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.260 -4.344 -11.173 27.060 hybrid contribution -1.397 1.638 -0.621 2.241 sum -25.657 -2.706 -11.794 28.367 Atomic orbital electron populations 1.21738 0.96317 1.00843 1.01757 1.21569 0.95566 0.97703 1.01453 1.21678 0.94792 0.95414 1.03123 1.21971 0.96076 0.95968 1.02519 1.21448 0.96268 0.92883 0.86646 0.89319 1.20944 0.88894 0.88362 0.99631 1.42696 1.05398 1.02595 1.89366 1.19041 0.82053 0.94220 1.42029 0.89092 1.24629 0.95450 0.96880 1.01846 1.69697 1.11397 1.19912 1.57114 0.86601 0.81014 0.83332 0.77969 1.21171 1.21730 1.20247 1.45896 1.15549 1.55411 1.17420 1.17643 0.82486 0.78317 0.85812 1.90768 1.51746 1.59983 1.39102 1.21139 0.91844 1.01763 0.94384 1.21851 0.96379 0.94104 0.97185 1.20076 0.97908 1.02354 0.93765 1.20023 0.95526 0.93643 0.85604 1.22450 0.94022 0.95692 0.95812 1.67585 1.32727 1.13665 0.99130 1.85975 1.28327 1.74075 1.33246 1.23072 0.79870 1.00558 0.98214 1.22278 1.02937 0.99302 0.95367 1.20491 0.92632 0.98586 0.99943 0.93089 0.93303 0.92802 0.92568 0.92322 0.91492 0.91902 0.91697 0.90829 0.93907 0.94863 0.80397 0.93079 0.74889 0.83197 0.81142 0.91435 0.86999 0.89219 0.90076 0.89649 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.13 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.11 -1.49 3.81 -26.73 -0.10 -1.59 16 4 C -0.13 -1.69 4.89 -26.73 -0.13 -1.82 16 5 C 0.13 2.16 2.42 -67.93 -0.16 1.99 16 6 H 0.09 1.58 7.59 -51.93 -0.39 1.19 16 7 C 0.15 2.85 5.82 -4.04 -0.02 2.83 16 8 N -0.75 -18.17 5.24 -59.91 -0.31 -18.48 16 9 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 11 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -29.71 13.97 55.49 0.78 -28.93 16 13 Si 0.88 23.06 27.74 -169.99 -4.71 18.34 16 14 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 16 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 17 N -0.69 -11.50 4.46 -54.72 -0.24 -11.75 16 18 C 0.57 9.54 6.37 -12.29 -0.08 9.46 16 19 O -0.54 -9.55 13.42 5.32 0.07 -9.48 16 20 C 0.05 0.69 6.75 -83.02 -0.56 0.13 16 21 C -0.07 -0.94 9.30 -39.06 -0.36 -1.30 16 22 C -0.13 -1.42 5.75 -104.49 -0.60 -2.02 16 23 C 0.10 1.14 6.50 -38.93 -0.25 0.89 16 24 C 0.08 1.05 11.12 -17.29 -0.19 0.86 16 25 N -0.42 -6.29 9.52 -9.61 -0.09 -6.38 16 26 O -0.30 -2.99 10.29 -18.26 -0.19 -3.18 16 27 C 0.06 0.35 7.01 37.36 0.26 0.61 16 28 C -0.16 -0.90 6.20 -26.43 -0.16 -1.07 16 29 C -0.08 -0.56 5.90 -27.89 -0.16 -0.73 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 36 H 0.06 0.93 5.62 -51.92 -0.29 0.63 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.36 8.85 5.20 -40.82 -0.21 8.64 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.41 7.04 7.93 -40.82 -0.32 6.72 16 44 H 0.15 1.75 7.64 -52.49 -0.40 1.35 16 45 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.11 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -34.03 407.39 -9.53 -43.56 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.39 Total: 11.62 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.58 Total: -1.45 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.13 Total: -65.55 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.12 Total: -12.66 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.03 -9.53 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506558648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.109 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds