Wall clock time and date at job start Wed Apr 1 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 C 1.53001 * 109.47758 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47413 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47189 * 54.99719 * 5 4 3 7 7 C 1.52999 * 109.47197 * 175.00087 * 5 4 3 8 8 N 1.46507 * 109.47085 * 174.99896 * 7 5 4 9 9 C 1.36934 * 119.99578 * 179.97438 * 8 7 5 10 10 H 1.07992 * 120.00493 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99601 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99876 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00101 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47095 * 89.99642 * 13 11 9 15 15 H 1.48502 * 109.47384 * 209.99683 * 13 11 9 16 16 H 1.48497 * 109.47365 * 330.00226 * 13 11 9 17 17 N 1.46506 * 109.47182 * 295.00131 * 5 4 3 18 18 C 1.34773 * 119.99969 * 84.72073 * 17 5 4 19 19 O 1.21550 * 120.00098 * 0.02562 * 18 17 5 20 20 C 1.47926 * 119.99997 * 179.97438 * 18 17 5 21 21 C 1.39463 * 119.71658 * 179.72566 * 20 18 17 22 22 C 1.38416 * 119.06610 * 179.75256 * 21 20 18 23 23 C 1.38698 * 118.72348 * 0.37784 * 22 21 20 24 24 C 1.39543 * 119.04125 * 359.95341 * 23 22 21 25 25 N 1.31304 * 120.84496 * 359.84391 * 24 23 22 26 26 O 1.35521 * 121.72262 * 180.23844 * 23 22 21 27 27 C 1.42879 * 117.75331 * 342.66106 * 26 23 22 28 28 C 1.53400 * 108.52770 * 49.26390 * 27 26 23 29 29 C 1.50493 * 119.62215 * 180.02562 * 22 21 20 30 30 H 1.08996 * 109.46905 * 60.00225 * 1 2 3 31 31 H 1.09005 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47388 * 300.00034 * 1 2 3 33 33 H 1.08998 * 109.47388 * 239.99966 * 2 1 3 34 34 H 1.09007 * 109.47344 * 119.99962 * 2 1 3 35 35 H 1.09003 * 109.47281 * 59.99762 * 3 2 1 36 36 H 1.09007 * 109.47346 * 300.00349 * 3 2 1 37 37 H 1.08998 * 109.47116 * 59.99933 * 4 3 2 38 38 H 1.08996 * 109.46851 * 299.99941 * 4 3 2 39 39 H 1.08997 * 109.46838 * 294.99742 * 7 5 4 40 40 H 1.08991 * 109.47160 * 54.99850 * 7 5 4 41 41 H 0.96998 * 119.99847 * 0.02562 * 8 7 5 42 42 H 0.96997 * 119.99904 * 180.02562 * 12 11 9 43 43 H 0.97005 * 119.99811 * 265.00126 * 17 5 4 44 44 H 1.08001 * 120.47175 * 0.02562 * 21 20 18 45 45 H 1.08003 * 119.57889 * 179.86549 * 24 23 22 46 46 H 1.08998 * 109.63303 * 289.54485 * 27 26 23 47 47 H 1.09008 * 109.78561 * 169.06632 * 27 26 23 48 48 H 1.09006 * 109.68500 * 175.61932 * 28 27 26 49 49 H 1.08995 * 109.72084 * 55.06790 * 28 27 26 50 50 H 1.08998 * 109.46039 * 282.65237 * 29 22 21 51 51 H 1.08998 * 109.46417 * 42.62773 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 5.6048 2.8868 0.1276 8 7 6.1030 4.2594 0.0084 9 6 7.4468 4.5095 0.0913 10 1 8.1393 3.6950 0.2440 11 6 7.9189 5.8099 -0.0222 12 7 9.2106 6.0503 0.0569 13 14 6.7212 7.2187 -0.2871 14 1 6.2886 7.7547 1.0285 15 1 7.3864 8.2944 -1.0653 16 1 5.5363 6.7270 -1.0350 17 7 3.6929 3.5404 -1.2505 18 6 2.4736 4.1024 -1.3679 19 8 1.6952 4.0659 -0.4350 20 6 2.0830 4.7646 -2.6316 21 6 0.8176 5.3392 -2.7486 22 6 0.4681 5.9600 -3.9354 23 6 1.3887 5.9818 -4.9726 24 6 2.6337 5.3799 -4.7860 25 7 2.9382 4.8020 -3.6469 26 8 1.1122 6.5767 -6.1584 27 6 -0.2570 6.8490 -6.4629 28 6 -0.8926 7.5565 -5.2592 29 6 -0.8939 6.5847 -4.0751 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9338 0.9286 -0.8891 38 1 3.9330 0.9289 0.8908 39 1 5.8894 2.4799 1.0979 40 1 6.0357 2.2739 -0.6639 41 1 5.4810 4.9909 -0.1284 42 1 9.5405 6.9591 -0.0220 43 1 4.3128 3.5662 -1.9963 44 1 0.1219 5.3043 -1.9233 45 1 3.3564 5.3899 -5.5886 46 1 -0.7820 5.9138 -6.6571 47 1 -0.3189 7.4927 -7.3404 48 1 -1.9164 7.8429 -5.5002 49 1 -0.3129 8.4441 -5.0061 50 1 -1.6355 5.8043 -4.2459 51 1 -1.1404 7.1263 -3.1619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506558648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:33 Heat of formation + Delta-G solvation = -68.076679 kcal Electronic energy + Delta-G solvation = -31132.186561 eV Core-core repulsion = 27030.387755 eV Total energy + Delta-G solvation = -4101.798806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30616 -41.05943 -39.37025 -37.93228 -36.34897 -35.74376 -35.13474 -33.44876 -32.76477 -32.24704 -31.37748 -29.01429 -27.16893 -26.22041 -25.57756 -24.42529 -23.56355 -23.17872 -21.83935 -21.70187 -20.91775 -19.83070 -19.03490 -18.89872 -18.06637 -17.39965 -16.86539 -16.67731 -16.55488 -16.09494 -15.91473 -15.72555 -15.64878 -15.16338 -15.03977 -14.90022 -14.79534 -14.54484 -14.41777 -14.28081 -13.94995 -13.91336 -13.65868 -13.39612 -13.24332 -12.98015 -12.94140 -12.61743 -12.50130 -12.17471 -11.99104 -11.94142 -11.89035 -11.85910 -11.72904 -11.46477 -11.39401 -11.24397 -11.04579 -10.68997 -10.60750 -10.03465 -9.53119 -9.33222 -8.05872 -5.37911 -0.43022 0.02285 1.32292 1.32740 1.39832 1.62849 2.03273 2.15393 2.42736 2.71799 3.12415 3.26785 3.37970 3.41428 3.50033 3.61927 3.84929 3.85802 3.92333 4.02645 4.07113 4.13600 4.22949 4.28937 4.32111 4.46588 4.51063 4.51638 4.58601 4.60598 4.67706 4.83007 4.85710 4.89801 4.91072 4.93623 4.98790 4.99573 5.07060 5.12328 5.13734 5.19919 5.22243 5.33094 5.40253 5.54363 5.60070 5.74058 6.11457 6.18387 6.40935 6.72170 7.04075 7.14451 7.80261 7.97970 9.15671 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007010 B = 0.004041 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.614545 B = 6926.938416 C =10150.407925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.119 4.119 5 C 0.142 3.858 6 H 0.074 0.926 7 C 0.148 3.852 8 N -0.758 5.758 9 C -0.228 4.228 10 H 0.067 0.933 11 C -0.054 4.054 12 N -0.979 5.979 13 Si 0.944 3.056 14 H -0.283 1.283 15 H -0.292 1.292 16 H -0.266 1.266 17 N -0.696 5.696 18 C 0.571 3.429 19 O -0.556 6.556 20 C 0.016 3.984 21 C -0.075 4.075 22 C -0.130 4.130 23 C 0.108 3.892 24 C 0.068 3.932 25 N -0.443 5.443 26 O -0.313 6.313 27 C 0.047 3.953 28 C -0.156 4.156 29 C -0.082 4.082 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.362 0.638 42 H 0.258 0.742 43 H 0.412 0.588 44 H 0.156 0.844 45 H 0.185 0.815 46 H 0.080 0.920 47 H 0.137 0.863 48 H 0.120 0.880 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.028 -3.895 -13.257 31.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.157 4.157 5 C 0.037 3.963 6 H 0.092 0.908 7 C 0.022 3.978 8 N -0.403 5.403 9 C -0.359 4.359 10 H 0.085 0.915 11 C -0.246 4.246 12 N -0.630 5.630 13 Si 0.773 3.227 14 H -0.209 1.209 15 H -0.219 1.219 16 H -0.191 1.191 17 N -0.346 5.346 18 C 0.357 3.643 19 O -0.435 6.435 20 C -0.121 4.121 21 C -0.096 4.096 22 C -0.138 4.138 23 C 0.059 3.941 24 C -0.095 4.095 25 N -0.155 5.155 26 O -0.225 6.225 27 C -0.027 4.027 28 C -0.194 4.194 29 C -0.118 4.118 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.195 0.805 42 H 0.067 0.933 43 H 0.248 0.752 44 H 0.173 0.827 45 H 0.202 0.798 46 H 0.098 0.902 47 H 0.155 0.845 48 H 0.139 0.861 49 H 0.089 0.911 50 H 0.123 0.877 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -27.419 -4.339 -12.560 30.469 hybrid contribution -0.482 1.584 -0.285 1.680 sum -27.901 -2.755 -12.845 30.839 Atomic orbital electron populations 1.21727 0.95688 1.01809 1.01323 1.21543 0.96142 0.96033 1.02225 1.21556 0.94452 0.96701 1.01511 1.21925 0.96220 0.93906 1.03679 1.21312 0.94028 0.94661 0.86279 0.90835 1.21122 0.90846 0.85813 1.00057 1.42723 1.03693 1.04718 1.89190 1.19064 0.83642 0.93433 1.39732 0.91544 1.25308 0.96917 0.99453 1.02936 1.69845 1.13349 1.20342 1.59419 0.85568 0.79128 0.80147 0.77840 1.20939 1.21863 1.19140 1.45911 1.15733 1.55771 1.17191 1.17917 0.82106 0.77919 0.86351 1.90741 1.52110 1.60744 1.39930 1.21016 0.93192 1.03760 0.94085 1.21962 0.95532 0.93919 0.98183 1.20454 0.99474 1.01312 0.92575 1.20026 0.95051 0.92655 0.86376 1.22746 0.95263 0.95925 0.95564 1.67490 1.33424 1.14780 0.99847 1.85973 1.30969 1.73351 1.32245 1.23481 0.78021 1.01870 0.99343 1.22291 1.04550 0.98231 0.94298 1.20656 0.90634 0.99391 1.01143 0.93668 0.91617 0.93137 0.91976 0.91291 0.93045 0.93589 0.90826 0.89264 0.93214 0.94045 0.80483 0.93302 0.75200 0.82685 0.79769 0.90155 0.84512 0.86139 0.91126 0.87738 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.12 -2.50 5.93 30.59 0.18 -2.32 16 3 C -0.10 -2.71 3.81 30.59 0.12 -2.59 16 4 C -0.12 -3.05 4.89 30.59 0.15 -2.90 16 5 C 0.14 4.60 2.42 44.99 0.11 4.70 16 6 H 0.07 2.63 7.59 -2.38 -0.02 2.61 16 7 C 0.15 5.59 5.82 86.38 0.50 6.09 16 8 N -0.76 -36.47 5.24 -343.46 -1.80 -38.27 16 9 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 10 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 11 C -0.05 -3.28 5.50 84.86 0.47 -2.81 16 12 N -0.98 -63.63 13.97 21.65 0.30 -63.33 16 13 Si 0.94 48.35 27.74 68.60 1.90 50.25 16 14 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 16 H -0.27 -13.00 6.52 99.48 0.65 -12.35 16 17 N -0.70 -23.28 4.46 -445.32 -1.99 -25.27 16 18 C 0.57 19.27 6.37 86.81 0.55 19.82 16 19 O -0.56 -20.02 13.42 -3.87 -0.05 -20.07 16 20 C 0.02 0.47 6.75 41.86 0.28 0.76 16 21 C -0.08 -1.86 9.30 22.61 0.21 -1.65 16 22 C -0.13 -2.57 5.75 -19.78 -0.11 -2.68 16 23 C 0.11 2.31 6.50 22.69 0.15 2.46 16 24 C 0.07 1.70 11.12 85.09 0.95 2.64 16 25 N -0.44 -13.39 9.52 -184.33 -1.76 -15.14 16 26 O -0.31 -5.48 10.29 -88.24 -0.91 -6.39 16 27 C 0.05 0.41 7.01 72.12 0.51 0.91 16 28 C -0.16 -1.20 6.20 30.79 0.19 -1.01 16 29 C -0.08 -0.91 5.90 29.85 0.18 -0.74 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.05 1.48 7.84 -2.39 -0.02 1.46 16 36 H 0.05 1.35 5.62 -2.38 -0.01 1.34 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.36 17.56 5.20 -92.71 -0.48 17.08 16 42 H 0.26 16.02 8.31 -92.71 -0.77 15.24 16 43 H 0.41 14.15 7.93 -92.70 -0.73 13.42 16 44 H 0.16 3.55 7.64 -2.91 -0.02 3.53 16 45 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.14 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.76 407.39 1.39 -73.38 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.34 Total: 38.55 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 6.02 Total: 6.28 kcal Atomic # 7 Polarization: -136.76 SS G_CDS: -5.24 Total: -142.00 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.96 Total: -26.46 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.90 Total: 50.25 kcal Total: -74.76 1.39 -73.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506558648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.300 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds