Wall clock time and date at job start Wed Apr 1 2020 04:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47331 * 342.64011 * 3 2 1 5 5 C 1.53008 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46890 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00109 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99692 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00010 * 179.97438 * 8 6 5 10 10 H 1.09004 * 115.56870 * 9.28219 * 9 8 6 11 11 C 1.53049 * 117.50713 * 223.56282 * 9 8 6 12 12 C 1.52731 * 117.50445 * 155.00263 * 9 8 6 13 13 C 1.53222 * 117.83991 * 215.21489 * 12 9 8 14 14 C 1.53267 * 108.61409 * 197.01288 * 13 12 9 15 15 N 1.46806 * 109.44469 * 304.40962 * 14 13 12 16 16 C 1.46901 * 111.00331 * 189.20271 * 15 14 13 17 17 C 1.50704 * 109.46929 * 300.22570 * 16 15 14 18 18 O 1.21297 * 119.99906 * 354.33471 * 17 16 15 19 19 N 1.34768 * 120.00427 * 174.33600 * 17 16 15 20 20 C 1.37101 * 120.00518 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99535 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00099 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00486 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99806 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47085 * 60.00441 * 24 22 20 26 26 H 1.48508 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47532 * 300.00239 * 24 22 20 28 28 C 1.46812 * 111.58392 * 64.82108 * 15 14 13 29 29 C 1.53213 * 117.84378 * 359.73400 * 12 9 8 30 30 H 4.44642 * 5.63454 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47426 * 222.63643 * 3 2 1 32 32 H 1.09003 * 109.46845 * 102.64203 * 3 2 1 33 33 H 1.08998 * 109.47138 * 60.00438 * 4 3 2 34 34 H 1.08997 * 109.46993 * 299.99596 * 4 3 2 35 35 H 1.09004 * 109.46685 * 59.99861 * 5 4 3 36 36 H 1.09003 * 109.47131 * 300.00230 * 5 4 3 37 37 H 0.96999 * 119.99525 * 0.02562 * 8 6 5 38 38 H 1.08996 * 117.51035 * 145.05604 * 11 9 8 39 39 H 1.09008 * 117.53158 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.61127 * 316.74352 * 13 12 9 41 41 H 1.08995 * 109.61664 * 77.27694 * 13 12 9 42 42 H 1.09001 * 109.47142 * 184.41791 * 14 13 12 43 43 H 1.08997 * 109.48370 * 64.40508 * 14 13 12 44 44 H 1.08999 * 109.46886 * 60.21994 * 16 15 14 45 45 H 1.08997 * 109.47726 * 180.22455 * 16 15 14 46 46 H 0.97002 * 119.99841 * 359.97438 * 19 17 16 47 47 H 0.96998 * 120.00800 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.47904 * 175.18585 * 28 15 14 49 49 H 1.09011 * 109.47379 * 55.17449 * 28 15 14 50 50 H 1.08999 * 109.61391 * 282.72583 * 29 12 9 51 51 H 1.08990 * 109.61157 * 43.07406 * 29 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.3759 0.4304 5 6 4.6867 -1.3753 0.4298 6 6 5.1896 -2.7310 0.8543 7 8 4.4019 -3.6110 1.1297 8 7 6.5148 -2.9654 0.9279 9 6 7.0038 -4.2830 1.3411 10 1 6.2461 -5.0627 1.4193 11 6 8.1670 -4.3256 2.3349 12 6 8.3967 -4.6977 0.8713 13 6 8.6290 -6.1750 0.5378 14 6 10.1385 -6.4389 0.5105 15 7 10.7787 -5.5174 -0.4361 16 6 12.1855 -5.8799 -0.6542 17 6 12.9272 -5.8257 0.6565 18 8 12.3689 -5.4172 1.6529 19 7 14.2109 -6.2309 0.7218 20 6 14.8858 -6.1810 1.9141 21 1 14.3889 -5.8166 2.8010 22 6 16.2091 -6.5993 1.9814 23 7 16.8140 -7.0423 0.9021 24 14 17.1289 -6.5307 3.6058 25 1 16.4328 -7.3806 4.6051 26 1 18.5145 -7.0284 3.4115 27 1 17.1708 -5.1283 4.0922 28 6 10.6571 -4.1216 0.0027 29 6 9.1802 -3.7122 -0.0019 30 1 -1.0498 -0.0004 0.0003 31 1 3.0090 0.7568 0.6961 32 1 3.0091 0.2257 -1.0028 33 1 2.7937 -2.1320 -0.2658 34 1 2.7934 -1.6009 1.4332 35 1 5.0499 -0.6190 1.1256 36 1 5.0495 -1.1504 -0.5732 37 1 7.1448 -2.2613 0.7079 38 1 8.1745 -5.1332 3.0669 39 1 8.5689 -3.3734 2.6812 40 1 8.1622 -6.7997 1.2992 41 1 8.2004 -6.4016 -0.4384 42 1 10.3222 -7.4668 0.1977 43 1 10.5529 -6.2826 1.5065 44 1 12.2415 -6.8893 -1.0618 45 1 12.6368 -5.1789 -1.3563 46 1 14.6573 -6.5578 -0.0749 47 1 17.7379 -7.3339 0.9489 48 1 11.2150 -3.4771 -0.6765 49 1 11.0589 -4.0214 1.0111 50 1 8.7958 -3.7411 -1.0214 51 1 9.0760 -2.7045 0.4000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566688634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:08 Heat of formation + Delta-G solvation = -4.559843 kcal Electronic energy + Delta-G solvation = -29703.445505 eV Core-core repulsion = 25604.400996 eV Total energy + Delta-G solvation = -4099.044510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.37964 -39.40984 -38.18479 -36.13007 -35.75060 -33.94077 -33.31736 -32.53013 -31.36784 -30.74233 -30.05777 -28.25730 -26.32171 -24.20162 -23.53355 -23.13048 -22.00472 -21.18659 -20.47907 -19.36309 -18.64893 -18.45806 -17.80289 -17.18429 -16.45546 -16.29306 -15.96892 -15.30199 -14.84139 -14.78932 -14.71824 -14.61275 -14.28657 -14.00666 -13.88079 -13.80219 -13.43537 -13.25845 -12.94132 -12.90644 -12.66323 -12.11409 -11.96560 -11.89357 -11.77670 -11.70061 -11.43579 -11.38280 -11.25708 -11.16193 -10.60084 -10.59245 -10.52164 -10.47274 -10.45084 -10.27967 -10.26805 -10.07965 -9.70009 -9.49134 -9.19657 -8.71896 -8.02367 -7.40500 -6.47856 -3.89413 2.37934 2.42865 2.49247 2.90277 3.14082 3.21155 3.25082 3.80873 3.82996 3.98412 4.12247 4.35671 4.37085 4.59079 4.64726 4.66237 4.74622 4.85458 4.97570 5.02171 5.05275 5.06658 5.17663 5.18469 5.20486 5.46133 5.54635 5.66979 5.71347 5.71655 5.74968 5.78498 5.87178 5.87586 5.89989 5.94705 6.01984 6.08353 6.10855 6.21324 6.28347 6.31530 6.39975 6.61413 6.76564 7.26975 7.28337 7.39488 7.48159 7.50467 7.98436 8.01447 8.53555 9.10466 9.47062 9.97731 10.68566 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028103 B = 0.001592 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.099072 B =17588.969392 C =17786.106708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.515 3.485 7 O -0.541 6.541 8 N -0.699 5.699 9 C 0.078 3.922 10 H 0.134 0.866 11 C -0.177 4.177 12 C -0.113 4.113 13 C -0.074 4.074 14 C 0.044 3.956 15 N -0.514 5.514 16 C 0.042 3.958 17 C 0.406 3.594 18 O -0.593 6.593 19 N -0.556 5.556 20 C -0.303 4.303 21 H 0.102 0.898 22 C 0.025 3.975 23 N -0.898 5.898 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.045 3.955 29 C -0.073 4.073 30 H 0.216 0.784 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.401 0.599 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.742 11.278 -4.900 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.302 3.698 7 O -0.418 6.418 8 N -0.349 5.349 9 C -0.028 4.028 10 H 0.151 0.849 11 C -0.216 4.216 12 C -0.115 4.115 13 C -0.112 4.112 14 C -0.084 4.084 15 N -0.237 5.237 16 C -0.090 4.090 17 C 0.191 3.809 18 O -0.480 6.480 19 N -0.192 5.192 20 C -0.433 4.433 21 H 0.119 0.881 22 C -0.177 4.177 23 N -0.539 5.539 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 C -0.083 4.083 29 C -0.111 4.111 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.727 10.805 -4.525 25.569 hybrid contribution 1.583 0.213 0.963 1.865 sum -21.145 11.019 -3.562 24.108 Atomic orbital electron populations 1.24927 0.96039 1.00687 1.01185 1.23093 0.94588 1.00545 1.00384 1.18770 0.84911 0.98416 1.02960 1.21278 0.92841 0.95987 1.03631 1.21689 0.97507 0.95064 1.03882 1.20665 0.82001 0.90219 0.76963 1.90707 1.55251 1.46752 1.49082 1.45444 1.07019 1.13778 1.68653 1.21810 0.91246 0.86761 1.02964 0.84859 1.23567 1.01353 1.03529 0.93118 1.21959 0.96141 0.97225 0.96146 1.21181 0.96670 0.91964 1.01339 1.22234 0.92895 0.95455 0.97811 1.62239 1.12363 1.02972 1.46167 1.22048 0.88387 1.02538 0.96026 1.21129 0.83550 0.84982 0.91212 1.90417 1.67486 1.52527 1.37617 1.42051 1.10117 1.55342 1.11659 1.19657 0.94095 1.40591 0.88981 0.88067 1.25270 0.96904 0.96726 0.98809 1.69597 1.13269 1.42802 1.28248 0.85938 0.78157 0.78813 0.81431 1.19892 1.20891 1.19918 1.22214 0.94831 0.89163 1.02125 1.21108 0.95298 0.95848 0.98822 0.76698 0.89434 0.89401 0.90657 0.90691 0.88547 0.88462 0.76346 0.88086 0.88658 0.91686 0.91276 0.91777 0.90661 0.89472 0.89432 0.77399 0.91707 0.91911 0.90586 0.91261 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.58 19.25 29.55 0.57 -1.02 16 2 C -0.19 -1.52 13.34 -37.12 -0.50 -2.01 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.71 4.46 -26.73 -0.12 -0.83 16 5 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 6 C 0.51 5.15 7.83 -10.98 -0.09 5.07 16 7 O -0.54 -7.70 15.55 5.56 0.09 -7.61 16 8 N -0.70 -6.44 5.35 -53.92 -0.29 -6.73 16 9 C 0.08 0.87 6.14 -68.04 -0.42 0.46 16 10 H 0.13 1.68 7.40 -51.93 -0.38 1.29 16 11 C -0.18 -2.10 9.85 -26.83 -0.26 -2.37 16 12 C -0.11 -1.37 2.02 -154.55 -0.31 -1.68 16 13 C -0.07 -0.96 5.87 -26.48 -0.16 -1.11 16 14 C 0.04 0.70 4.96 -3.74 -0.02 0.68 16 15 N -0.51 -8.18 4.78 -235.88 -1.13 -9.30 16 16 C 0.04 0.72 5.82 -4.97 -0.03 0.69 16 17 C 0.41 9.00 7.19 -10.99 -0.08 8.92 16 18 O -0.59 -14.65 11.30 5.54 0.06 -14.59 16 19 N -0.56 -13.60 5.29 -10.96 -0.06 -13.66 16 20 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 21 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 23 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 24 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C 0.04 0.68 5.05 -3.74 -0.02 0.66 16 29 C -0.07 -0.86 5.31 -26.49 -0.14 -1.00 16 30 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.78 7.24 -40.82 -0.30 2.49 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.08 1.47 5.79 -51.93 -0.30 1.16 16 44 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16 45 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 46 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.06 0.91 8.02 -51.93 -0.42 0.50 16 49 H 0.08 1.43 5.80 -51.92 -0.30 1.13 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 0.57 6.94 -51.93 -0.36 0.21 16 LS Contribution 415.86 15.07 6.27 6.27 Total: -1.00 -32.46 415.86 -9.71 -42.17 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -8.21 Total: 13.65 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.13 Total: -2.59 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.75 Total: -52.92 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.15 Total: -22.20 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.46 -9.71 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566688634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.608 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds