Wall clock time and date at job start Wed Apr 1 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47331 * 342.64011 * 3 2 1 5 5 C 1.53008 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46890 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00109 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99692 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00010 * 179.97438 * 8 6 5 10 10 H 1.09004 * 115.56870 * 9.28219 * 9 8 6 11 11 C 1.53049 * 117.50713 * 223.56282 * 9 8 6 12 12 C 1.52731 * 117.50445 * 155.00263 * 9 8 6 13 13 C 1.53222 * 117.83991 * 215.21489 * 12 9 8 14 14 C 1.53267 * 108.61409 * 197.01288 * 13 12 9 15 15 N 1.46806 * 109.44469 * 304.40962 * 14 13 12 16 16 C 1.46901 * 111.00331 * 189.20271 * 15 14 13 17 17 C 1.50704 * 109.46929 * 300.22570 * 16 15 14 18 18 O 1.21297 * 119.99906 * 354.33471 * 17 16 15 19 19 N 1.34768 * 120.00427 * 174.33600 * 17 16 15 20 20 C 1.37101 * 120.00518 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99535 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00099 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00486 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99806 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47085 * 60.00441 * 24 22 20 26 26 H 1.48508 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47532 * 300.00239 * 24 22 20 28 28 C 1.46812 * 111.58392 * 64.82108 * 15 14 13 29 29 C 1.53213 * 117.84378 * 359.73400 * 12 9 8 30 30 H 4.44642 * 5.63454 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47426 * 222.63643 * 3 2 1 32 32 H 1.09003 * 109.46845 * 102.64203 * 3 2 1 33 33 H 1.08998 * 109.47138 * 60.00438 * 4 3 2 34 34 H 1.08997 * 109.46993 * 299.99596 * 4 3 2 35 35 H 1.09004 * 109.46685 * 59.99861 * 5 4 3 36 36 H 1.09003 * 109.47131 * 300.00230 * 5 4 3 37 37 H 0.96999 * 119.99525 * 0.02562 * 8 6 5 38 38 H 1.08996 * 117.51035 * 145.05604 * 11 9 8 39 39 H 1.09008 * 117.53158 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.61127 * 316.74352 * 13 12 9 41 41 H 1.08995 * 109.61664 * 77.27694 * 13 12 9 42 42 H 1.09001 * 109.47142 * 184.41791 * 14 13 12 43 43 H 1.08997 * 109.48370 * 64.40508 * 14 13 12 44 44 H 1.08999 * 109.46886 * 60.21994 * 16 15 14 45 45 H 1.08997 * 109.47726 * 180.22455 * 16 15 14 46 46 H 0.97002 * 119.99841 * 359.97438 * 19 17 16 47 47 H 0.96998 * 120.00800 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.47904 * 175.18585 * 28 15 14 49 49 H 1.09011 * 109.47379 * 55.17449 * 28 15 14 50 50 H 1.08999 * 109.61391 * 282.72583 * 29 12 9 51 51 H 1.08990 * 109.61157 * 43.07406 * 29 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.3759 0.4304 5 6 4.6867 -1.3753 0.4298 6 6 5.1896 -2.7310 0.8543 7 8 4.4019 -3.6110 1.1297 8 7 6.5148 -2.9654 0.9279 9 6 7.0038 -4.2830 1.3411 10 1 6.2461 -5.0627 1.4193 11 6 8.1670 -4.3256 2.3349 12 6 8.3967 -4.6977 0.8713 13 6 8.6290 -6.1750 0.5378 14 6 10.1385 -6.4389 0.5105 15 7 10.7787 -5.5174 -0.4361 16 6 12.1855 -5.8799 -0.6542 17 6 12.9272 -5.8257 0.6565 18 8 12.3689 -5.4172 1.6529 19 7 14.2109 -6.2309 0.7218 20 6 14.8858 -6.1810 1.9141 21 1 14.3889 -5.8166 2.8010 22 6 16.2091 -6.5993 1.9814 23 7 16.8140 -7.0423 0.9021 24 14 17.1289 -6.5307 3.6058 25 1 16.4328 -7.3806 4.6051 26 1 18.5145 -7.0284 3.4115 27 1 17.1708 -5.1283 4.0922 28 6 10.6571 -4.1216 0.0027 29 6 9.1802 -3.7122 -0.0019 30 1 -1.0498 -0.0004 0.0003 31 1 3.0090 0.7568 0.6961 32 1 3.0091 0.2257 -1.0028 33 1 2.7937 -2.1320 -0.2658 34 1 2.7934 -1.6009 1.4332 35 1 5.0499 -0.6190 1.1256 36 1 5.0495 -1.1504 -0.5732 37 1 7.1448 -2.2613 0.7079 38 1 8.1745 -5.1332 3.0669 39 1 8.5689 -3.3734 2.6812 40 1 8.1622 -6.7997 1.2992 41 1 8.2004 -6.4016 -0.4384 42 1 10.3222 -7.4668 0.1977 43 1 10.5529 -6.2826 1.5065 44 1 12.2415 -6.8893 -1.0618 45 1 12.6368 -5.1789 -1.3563 46 1 14.6573 -6.5578 -0.0749 47 1 17.7379 -7.3339 0.9489 48 1 11.2150 -3.4771 -0.6765 49 1 11.0589 -4.0214 1.0111 50 1 8.7958 -3.7411 -1.0214 51 1 9.0760 -2.7045 0.4000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566688634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:07 Heat of formation + Delta-G solvation = -26.501398 kcal Electronic energy + Delta-G solvation = -29704.396962 eV Core-core repulsion = 25604.400996 eV Total energy + Delta-G solvation = -4099.995967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38521 -40.66091 -39.50615 -37.32928 -36.44133 -35.78234 -34.27707 -33.31931 -33.10477 -31.88045 -31.25659 -28.82694 -27.88287 -25.90046 -24.39429 -24.10171 -23.09549 -22.14291 -21.25380 -21.06541 -20.01566 -19.40381 -19.10374 -17.94663 -17.69689 -17.36094 -16.86620 -16.64976 -16.33645 -16.14589 -15.74167 -15.62238 -15.41095 -15.32037 -15.30162 -14.68306 -14.57901 -14.45925 -13.92864 -13.57248 -13.52295 -13.46135 -13.26841 -13.12007 -12.94437 -12.84845 -12.70645 -12.49878 -12.45931 -12.44885 -12.14455 -11.92796 -11.91393 -11.55647 -11.44689 -11.28367 -11.16524 -10.96386 -10.95204 -10.89946 -10.63275 -9.98505 -9.63875 -8.94508 -8.45614 -5.95734 1.36964 1.39767 1.50052 1.61236 1.84736 1.94100 2.03529 2.16631 2.28336 2.85228 3.10851 3.20360 3.29218 3.53719 3.67036 3.74718 3.77385 3.88187 3.96662 4.11802 4.18598 4.28360 4.41857 4.42947 4.51204 4.58736 4.65097 4.66929 4.69636 4.70454 4.73368 4.83043 4.83879 4.88310 4.95398 4.98363 5.00886 5.13204 5.22313 5.23171 5.25021 5.33768 5.34979 5.38372 5.50455 5.54435 5.93405 6.10920 6.20078 6.57042 6.59587 6.73721 7.12150 7.28284 7.56466 8.11440 8.69256 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028103 B = 0.001592 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.099072 B =17588.969392 C =17786.106708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.095 4.095 5 C -0.131 4.131 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.689 5.689 9 C 0.094 3.906 10 H 0.119 0.881 11 C -0.185 4.185 12 C -0.119 4.119 13 C -0.069 4.069 14 C 0.047 3.953 15 N -0.503 5.503 16 C 0.049 3.951 17 C 0.408 3.592 18 O -0.619 6.619 19 N -0.571 5.571 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.044 3.956 29 C -0.064 4.064 30 H 0.238 0.762 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.416 0.584 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.072 0.928 49 H 0.037 0.963 50 H 0.083 0.917 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.200 12.989 -6.112 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.299 3.701 7 O -0.470 6.470 8 N -0.340 5.340 9 C -0.013 4.013 10 H 0.137 0.863 11 C -0.223 4.223 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.081 4.081 15 N -0.225 5.225 16 C -0.083 4.083 17 C 0.195 3.805 18 O -0.506 6.506 19 N -0.208 5.208 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.084 4.084 29 C -0.101 4.101 30 H 0.254 0.746 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.254 0.746 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.055 0.945 50 H 0.101 0.899 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.181 12.544 -5.760 26.979 hybrid contribution 1.623 -0.323 1.345 2.132 sum -21.558 12.221 -4.415 25.172 Atomic orbital electron populations 1.25707 0.97154 1.00256 1.00961 1.23877 0.95920 1.01012 1.00765 1.18865 0.83620 0.97711 1.04525 1.21175 0.93948 0.96412 1.01765 1.21725 0.96199 0.92874 1.06206 1.21456 0.81593 0.91256 0.75784 1.90696 1.56406 1.48651 1.51265 1.45382 1.07300 1.13248 1.68060 1.21530 0.90280 0.87566 1.01906 0.86297 1.23582 1.02122 1.03503 0.93111 1.21958 0.96988 0.96792 0.96294 1.21130 0.94373 0.93003 1.02149 1.22167 0.94754 0.95647 0.95561 1.62362 1.11114 1.03452 1.45620 1.22153 0.88447 1.04370 0.93309 1.22185 0.82842 0.82699 0.92786 1.90429 1.67908 1.52889 1.39415 1.42127 1.10950 1.56654 1.11025 1.19602 0.95066 1.42242 0.89442 0.90475 1.25984 0.97108 0.95995 1.01954 1.69658 1.13642 1.43048 1.29611 0.85049 0.77327 0.78708 0.77620 1.19918 1.19523 1.19746 1.22231 0.97353 0.88852 0.99984 1.21078 0.92543 0.96814 0.99683 0.74575 0.87565 0.87463 0.92795 0.92924 0.85649 0.85431 0.74638 0.89009 0.88243 0.91196 0.90230 0.91682 0.94600 0.87682 0.87182 0.77101 0.91315 0.90920 0.94459 0.89862 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.19 19.25 74.32 1.43 -1.76 16 2 C -0.22 -3.31 13.34 31.12 0.42 -2.89 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.09 -1.24 4.46 30.60 0.14 -1.10 16 5 C -0.13 -1.14 5.70 29.85 0.17 -0.97 16 6 C 0.51 9.34 7.83 87.66 0.69 10.03 16 7 O -0.59 -16.74 15.55 -3.02 -0.05 -16.79 16 8 N -0.69 -11.12 5.35 -442.88 -2.37 -13.49 16 9 C 0.09 2.00 6.14 44.92 0.28 2.28 16 10 H 0.12 2.97 7.40 -2.39 -0.02 2.95 16 11 C -0.18 -4.31 9.85 30.53 0.30 -4.01 16 12 C -0.12 -2.73 2.02 -52.21 -0.11 -2.83 16 13 C -0.07 -1.73 5.87 30.76 0.18 -1.55 16 14 C 0.05 1.49 4.96 86.41 0.43 1.92 16 15 N -0.50 -15.38 4.78 -900.19 -4.30 -19.68 16 16 C 0.05 1.63 5.82 85.56 0.50 2.12 16 17 C 0.41 18.36 7.19 87.66 0.63 18.99 16 18 O -0.62 -31.55 11.30 -3.08 -0.03 -31.59 16 19 N -0.57 -28.46 5.29 -306.99 -1.62 -30.08 16 20 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 21 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 24 Si 0.99 42.47 29.55 68.60 2.03 44.49 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.04 1.28 5.05 86.41 0.44 1.71 16 29 C -0.06 -1.34 5.31 30.75 0.16 -1.18 16 30 H 0.24 1.77 7.80 -4.43 -0.03 1.73 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.13 0.42 8.14 -2.39 -0.02 0.41 16 37 H 0.42 4.31 7.24 -92.71 -0.67 3.64 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 43 H 0.04 1.44 5.79 -2.39 -0.01 1.43 16 44 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 45 H 0.11 3.21 8.04 -2.39 -0.02 3.19 16 46 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 47 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 48 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 49 H 0.04 1.41 5.80 -2.38 -0.01 1.39 16 50 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.08 1.34 6.94 -2.39 -0.02 1.33 16 Total: -1.00 -73.63 415.86 0.57 -73.06 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.46 Total: 39.83 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 7.09 Total: 2.98 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -8.01 Total: -111.99 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.08 Total: -48.37 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.63 0.57 -73.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566688634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.560 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds