Wall clock time and date at job start Wed Apr 1 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 C 1.53002 * 109.47144 * 239.99942 * 2 1 3 5 5 N 1.46499 * 109.46818 * 120.00027 * 2 1 3 6 6 C 1.35434 * 119.47383 * 359.97438 * 5 2 1 7 7 C 1.35751 * 121.23223 * 180.02562 * 6 5 2 8 8 C 1.39471 * 120.13211 * 0.02562 * 7 6 5 9 9 C 1.39330 * 118.95936 * 359.97438 * 8 7 6 10 10 C 1.47083 * 120.59163 * 179.97438 * 9 8 7 11 11 O 1.21650 * 119.99709 * 5.89257 * 10 9 8 12 12 N 1.34770 * 120.00347 * 185.89528 * 10 9 8 13 13 C 1.46501 * 120.00136 * 176.07293 * 12 10 9 14 14 H 1.08999 * 109.47213 * 324.99996 * 13 12 10 15 15 C 1.53001 * 109.47319 * 204.99714 * 13 12 10 16 16 N 1.46500 * 109.46754 * 55.00464 * 15 13 12 17 17 C 1.36939 * 119.99861 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99679 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99723 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00109 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47371 * 90.00067 * 21 19 17 23 23 H 1.48503 * 109.47266 * 210.00179 * 21 19 17 24 24 H 1.48506 * 109.47082 * 329.99913 * 21 19 17 25 25 C 1.53007 * 109.47173 * 84.99706 * 13 12 10 26 26 C 1.52991 * 117.50044 * 231.25336 * 25 13 12 27 27 C 1.52997 * 117.49651 * 299.91696 * 25 13 12 28 28 C 1.34658 * 119.47042 * 180.26643 * 5 2 1 29 29 O 1.21883 * 120.10296 * 0.02562 * 28 5 2 30 30 H 1.08994 * 109.47375 * 300.00567 * 1 2 3 31 31 H 1.09007 * 109.47149 * 59.99879 * 1 2 3 32 32 H 1.09003 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47002 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46875 * 299.99821 * 3 2 1 35 35 H 1.08998 * 109.46882 * 59.99928 * 3 2 1 36 36 H 1.09003 * 109.47089 * 300.00311 * 4 2 1 37 37 H 1.08997 * 109.47373 * 60.00390 * 4 2 1 38 38 H 1.09002 * 109.47045 * 180.02562 * 4 2 1 39 39 H 1.08003 * 119.38336 * 359.97438 * 6 5 2 40 40 H 1.08003 * 119.93739 * 180.02562 * 7 6 5 41 41 H 1.08004 * 120.51868 * 179.97438 * 8 7 6 42 42 H 0.97005 * 120.00172 * 356.07074 * 12 10 9 43 43 H 1.09006 * 109.46967 * 175.00109 * 15 13 12 44 44 H 1.08993 * 109.47038 * 295.00153 * 15 13 12 45 45 H 0.97000 * 120.00509 * 359.97438 * 16 15 13 46 46 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 47 47 H 1.09002 * 115.54400 * 85.58364 * 25 13 12 48 48 H 1.08998 * 117.50326 * 215.00089 * 26 25 13 49 49 H 1.09001 * 117.50138 * 0.02705 * 26 25 13 50 50 H 1.08997 * 117.50333 * 359.97438 * 27 25 13 51 51 H 1.09001 * 117.49680 * 144.99719 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.1287 -1.2008 2.0808 7 6 1.5417 -1.8469 3.2010 8 6 2.9037 -1.9964 3.4611 9 6 3.8248 -1.4742 2.5555 10 6 5.2696 -1.6109 2.7945 11 8 5.6709 -2.2751 3.7314 12 7 6.1489 -1.0004 1.9757 13 6 7.5840 -1.0650 2.2630 14 1 7.7397 -1.0506 3.3417 15 6 8.2855 0.1387 1.6304 16 7 7.6514 1.3741 2.0971 17 6 8.1128 2.5875 1.6612 18 1 8.9445 2.6336 0.9737 19 6 7.5117 3.7581 2.1030 20 7 7.9556 4.9244 1.6844 21 14 6.0729 3.6783 3.2916 22 1 6.5810 3.7062 4.6866 23 1 5.1797 4.8432 3.0667 24 1 5.3139 2.4218 3.0663 25 6 8.1630 -2.3563 1.6814 26 6 8.9946 -3.2401 2.6130 27 6 7.5902 -3.6800 2.1919 28 6 3.3444 -0.8028 1.4015 29 8 4.1295 -0.3321 0.5968 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6768 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 0.0710 -1.0908 1.8920 40 1 0.8141 -2.2460 3.8923 41 1 3.2392 -2.5090 4.3506 42 1 5.8316 -0.5182 1.1961 43 1 9.3369 0.1389 1.9179 44 1 8.2055 0.0767 0.5452 45 1 6.9042 1.3327 2.7143 46 1 7.5358 5.7424 1.9934 47 1 8.4618 -2.3076 0.6343 48 1 9.8405 -3.7731 2.1790 49 1 9.1289 -2.9019 3.6405 50 1 6.8012 -3.6310 2.9423 51 1 7.5122 -4.5023 1.4806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569321161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:16 Heat of formation + Delta-G solvation = 15.330829 kcal Electronic energy + Delta-G solvation = -32597.041954 eV Core-core repulsion = 28498.859969 eV Total energy + Delta-G solvation = -4098.181985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02856 -39.61751 -37.43243 -37.27747 -36.39858 -34.98105 -33.17174 -32.34125 -31.19464 -30.34329 -28.57485 -27.86539 -27.58708 -24.84898 -23.87588 -23.47799 -22.05189 -21.45914 -21.13260 -20.15544 -19.90387 -18.09392 -17.65306 -17.32235 -16.84445 -16.10042 -16.06322 -15.72808 -15.13534 -14.77935 -14.63911 -14.51658 -14.22481 -14.09102 -14.03682 -13.46178 -13.15376 -13.05177 -12.88726 -12.69323 -12.52155 -12.42123 -12.35512 -12.26113 -11.98749 -11.77883 -11.76941 -11.50126 -11.43802 -11.16644 -11.09101 -10.92364 -10.78850 -10.18034 -10.11464 -10.02057 -9.90296 -9.74656 -9.52601 -9.47895 -8.83499 -8.47076 -8.14599 -7.15039 -5.70229 -3.04176 0.29994 1.65088 2.23427 2.86781 3.42442 3.48031 3.48747 3.57494 3.78377 4.06653 4.14246 4.28083 4.41003 4.52262 4.63865 4.66259 4.73586 4.92392 4.93730 4.99902 5.06417 5.12805 5.27687 5.33575 5.38696 5.39640 5.45092 5.50153 5.53716 5.60943 5.63471 5.70590 5.73516 5.85341 5.92763 5.95733 6.00274 6.01512 6.10077 6.16974 6.21907 6.29417 6.44775 6.59890 6.64129 6.76054 6.81450 7.10541 7.77413 8.06448 8.20233 8.48808 8.75331 9.28664 10.01525 10.22156 11.48362 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.005158 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.572120 B = 5426.897586 C = 7593.602228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 C -0.169 4.169 4 C -0.163 4.163 5 N -0.481 5.481 6 C 0.151 3.849 7 C -0.245 4.245 8 C 0.053 3.947 9 C -0.270 4.270 10 C 0.576 3.424 11 O -0.558 6.558 12 N -0.695 5.695 13 C 0.162 3.838 14 H 0.084 0.916 15 C 0.154 3.846 16 N -0.753 5.753 17 C -0.237 4.237 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.935 5.935 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.161 4.161 26 C -0.172 4.172 27 C -0.187 4.187 28 C 0.530 3.470 29 O -0.523 6.523 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.419 0.581 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.122 0.878 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.432 -17.197 -2.039 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 C -0.226 4.226 4 C -0.221 4.221 5 N -0.190 5.190 6 C 0.020 3.980 7 C -0.268 4.268 8 C 0.030 3.970 9 C -0.277 4.277 10 C 0.363 3.637 11 O -0.441 6.441 12 N -0.354 5.354 13 C 0.057 3.943 14 H 0.102 0.898 15 C 0.026 3.974 16 N -0.399 5.399 17 C -0.367 4.367 18 H 0.109 0.891 19 C -0.190 4.190 20 N -0.584 5.584 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.203 1.203 25 C -0.180 4.180 26 C -0.209 4.209 27 C -0.223 4.223 28 C 0.331 3.669 29 O -0.404 6.404 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.266 0.734 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.195 0.805 46 H 0.068 0.932 47 H 0.121 0.879 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.140 0.860 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.493 -17.065 -2.177 25.257 hybrid contribution -1.339 0.321 0.568 1.490 sum -19.832 -16.743 -1.608 26.004 Atomic orbital electron populations 1.22312 0.92654 1.03003 1.04131 1.21090 0.94631 0.94010 0.84065 1.22289 1.05359 0.92341 1.02631 1.22232 1.04854 0.99643 0.95339 1.45738 1.07395 1.45361 1.20481 1.22323 0.96645 0.90306 0.88700 1.20647 0.96417 1.09652 1.00092 1.21995 0.91791 0.87332 0.95912 1.21124 0.95580 1.11736 0.99269 1.17378 0.84658 0.79323 0.82335 1.90641 1.79568 1.41912 1.31946 1.46575 1.05985 1.53100 1.29766 1.20857 0.79845 0.93246 1.00309 0.89758 1.20878 0.95563 0.84105 0.96806 1.42674 1.39172 1.01899 1.56142 1.19067 1.13155 0.82062 1.22434 0.89105 1.24604 0.99094 0.95149 1.00122 1.69702 1.43761 0.96596 1.48316 0.86594 0.83756 0.76717 0.81904 1.21178 1.21868 1.20315 1.22605 1.04595 0.91791 0.99058 1.22886 0.94409 1.03675 0.99951 1.23348 0.98093 0.96616 1.04279 1.17002 0.80809 0.81574 0.87467 1.90633 1.52685 1.50177 1.46931 0.91235 0.89717 0.91322 0.88805 0.90614 0.92318 0.92487 0.90684 0.89215 0.81350 0.83074 0.83416 0.73374 0.93881 0.95003 0.80469 0.93211 0.87916 0.89303 0.88831 0.86021 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 7.08 37.16 0.26 -0.58 16 2 C 0.14 1.33 1.02 -131.82 -0.13 1.20 16 3 C -0.17 -1.95 8.39 37.16 0.31 -1.64 16 4 C -0.16 -1.53 8.40 37.16 0.31 -1.22 16 5 N -0.48 -5.20 2.53 -105.38 -0.27 -5.46 16 6 C 0.15 1.13 9.58 -16.85 -0.16 0.97 16 7 C -0.24 -1.90 9.99 -40.01 -0.40 -2.30 16 8 C 0.05 0.61 9.69 -38.72 -0.38 0.23 16 9 C -0.27 -4.15 5.92 -104.51 -0.62 -4.77 16 10 C 0.58 10.53 7.18 -12.68 -0.09 10.44 16 11 O -0.56 -10.74 13.19 5.23 0.07 -10.67 16 12 N -0.70 -13.28 4.41 -54.98 -0.24 -13.52 16 13 C 0.16 3.05 2.42 -67.93 -0.16 2.89 16 14 H 0.08 1.69 7.39 -51.93 -0.38 1.31 16 15 C 0.15 3.27 5.80 -4.04 -0.02 3.24 16 16 N -0.75 -19.30 5.24 -59.91 -0.31 -19.61 16 17 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 18 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 20 N -0.94 -30.26 13.97 55.49 0.78 -29.49 16 21 Si 0.88 23.51 27.73 -169.99 -4.71 18.80 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.28 -7.22 6.52 56.52 0.37 -6.85 16 25 C -0.16 -2.57 5.36 -90.62 -0.49 -3.06 16 26 C -0.17 -2.45 10.18 -26.70 -0.27 -2.72 16 27 C -0.19 -2.83 9.73 -26.69 -0.26 -3.09 16 28 C 0.53 7.97 6.84 -14.91 -0.10 7.87 16 29 O -0.52 -9.26 9.83 5.02 0.05 -9.21 16 30 H 0.07 0.31 7.41 -51.93 -0.38 -0.08 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.25 7.41 -51.93 -0.38 -0.13 16 33 H 0.09 1.47 6.10 -51.93 -0.32 1.15 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.13 6.14 -51.93 -0.32 0.81 16 39 H 0.17 0.58 5.55 -52.48 -0.29 0.29 16 40 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 41 H 0.15 1.57 7.71 -52.48 -0.40 1.17 16 42 H 0.42 8.46 5.21 -40.82 -0.21 8.24 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.36 9.40 5.20 -40.82 -0.21 9.19 16 46 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 47 H 0.10 1.56 8.11 -51.93 -0.42 1.14 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 50 H 0.12 2.09 4.84 -51.93 -0.25 1.84 16 51 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 398.00 15.07 6.00 6.00 Total: -1.00 -36.41 398.00 -8.92 -45.33 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -7.82 Total: 17.50 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.45 Total: 0.34 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -0.05 Total: -68.08 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.12 Total: -19.88 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.71 Total: 18.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.41 -8.92 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569321161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.657 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds