Wall clock time and date at job start Wed Apr 1 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 C 1.53002 * 109.47144 * 239.99942 * 2 1 3 5 5 N 1.46499 * 109.46818 * 120.00027 * 2 1 3 6 6 C 1.35434 * 119.47383 * 359.97438 * 5 2 1 7 7 C 1.35751 * 121.23223 * 180.02562 * 6 5 2 8 8 C 1.39471 * 120.13211 * 0.02562 * 7 6 5 9 9 C 1.39330 * 118.95936 * 359.97438 * 8 7 6 10 10 C 1.47083 * 120.59163 * 179.97438 * 9 8 7 11 11 O 1.21650 * 119.99709 * 5.89257 * 10 9 8 12 12 N 1.34770 * 120.00347 * 185.89528 * 10 9 8 13 13 C 1.46501 * 120.00136 * 176.07293 * 12 10 9 14 14 H 1.08999 * 109.47213 * 324.99996 * 13 12 10 15 15 C 1.53001 * 109.47319 * 204.99714 * 13 12 10 16 16 N 1.46500 * 109.46754 * 55.00464 * 15 13 12 17 17 C 1.36939 * 119.99861 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99679 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99723 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00109 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47371 * 90.00067 * 21 19 17 23 23 H 1.48503 * 109.47266 * 210.00179 * 21 19 17 24 24 H 1.48506 * 109.47082 * 329.99913 * 21 19 17 25 25 C 1.53007 * 109.47173 * 84.99706 * 13 12 10 26 26 C 1.52991 * 117.50044 * 231.25336 * 25 13 12 27 27 C 1.52997 * 117.49651 * 299.91696 * 25 13 12 28 28 C 1.34658 * 119.47042 * 180.26643 * 5 2 1 29 29 O 1.21883 * 120.10296 * 0.02562 * 28 5 2 30 30 H 1.08994 * 109.47375 * 300.00567 * 1 2 3 31 31 H 1.09007 * 109.47149 * 59.99879 * 1 2 3 32 32 H 1.09003 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47002 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46875 * 299.99821 * 3 2 1 35 35 H 1.08998 * 109.46882 * 59.99928 * 3 2 1 36 36 H 1.09003 * 109.47089 * 300.00311 * 4 2 1 37 37 H 1.08997 * 109.47373 * 60.00390 * 4 2 1 38 38 H 1.09002 * 109.47045 * 180.02562 * 4 2 1 39 39 H 1.08003 * 119.38336 * 359.97438 * 6 5 2 40 40 H 1.08003 * 119.93739 * 180.02562 * 7 6 5 41 41 H 1.08004 * 120.51868 * 179.97438 * 8 7 6 42 42 H 0.97005 * 120.00172 * 356.07074 * 12 10 9 43 43 H 1.09006 * 109.46967 * 175.00109 * 15 13 12 44 44 H 1.08993 * 109.47038 * 295.00153 * 15 13 12 45 45 H 0.97000 * 120.00509 * 359.97438 * 16 15 13 46 46 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 47 47 H 1.09002 * 115.54400 * 85.58364 * 25 13 12 48 48 H 1.08998 * 117.50326 * 215.00089 * 26 25 13 49 49 H 1.09001 * 117.50138 * 0.02705 * 26 25 13 50 50 H 1.08997 * 117.50333 * 359.97438 * 27 25 13 51 51 H 1.09001 * 117.49680 * 144.99719 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.1287 -1.2008 2.0808 7 6 1.5417 -1.8469 3.2010 8 6 2.9037 -1.9964 3.4611 9 6 3.8248 -1.4742 2.5555 10 6 5.2696 -1.6109 2.7945 11 8 5.6709 -2.2751 3.7314 12 7 6.1489 -1.0004 1.9757 13 6 7.5840 -1.0650 2.2630 14 1 7.7397 -1.0506 3.3417 15 6 8.2855 0.1387 1.6304 16 7 7.6514 1.3741 2.0971 17 6 8.1128 2.5875 1.6612 18 1 8.9445 2.6336 0.9737 19 6 7.5117 3.7581 2.1030 20 7 7.9556 4.9244 1.6844 21 14 6.0729 3.6783 3.2916 22 1 6.5810 3.7062 4.6866 23 1 5.1797 4.8432 3.0667 24 1 5.3139 2.4218 3.0663 25 6 8.1630 -2.3563 1.6814 26 6 8.9946 -3.2401 2.6130 27 6 7.5902 -3.6800 2.1919 28 6 3.3444 -0.8028 1.4015 29 8 4.1295 -0.3321 0.5968 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6768 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 0.0710 -1.0908 1.8920 40 1 0.8141 -2.2460 3.8923 41 1 3.2392 -2.5090 4.3506 42 1 5.8316 -0.5182 1.1961 43 1 9.3369 0.1389 1.9179 44 1 8.2055 0.0767 0.5452 45 1 6.9042 1.3327 2.7143 46 1 7.5358 5.7424 1.9934 47 1 8.4618 -2.3076 0.6343 48 1 9.8405 -3.7731 2.1790 49 1 9.1289 -2.9019 3.6405 50 1 6.8012 -3.6310 2.9423 51 1 7.5122 -4.5023 1.4806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569321161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:15 Heat of formation + Delta-G solvation = -9.460741 kcal Electronic energy + Delta-G solvation = -32598.116997 eV Core-core repulsion = 28498.859969 eV Total energy + Delta-G solvation = -4099.257029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.91703 -40.92703 -38.58485 -38.36963 -37.31031 -36.78045 -34.87569 -33.38394 -33.10619 -31.28768 -30.05761 -28.64776 -28.41133 -26.11004 -25.34021 -24.57401 -23.26736 -23.04986 -22.42253 -21.35485 -21.08391 -19.88235 -18.96687 -18.16523 -17.97584 -17.26406 -17.06623 -16.80667 -16.65552 -16.40566 -16.09485 -15.52195 -15.35746 -15.27203 -15.04867 -14.89104 -14.83043 -14.58538 -14.02124 -13.77567 -13.64403 -13.59353 -13.20252 -13.11981 -13.08907 -12.98239 -12.82187 -12.72725 -12.63450 -12.63096 -12.33815 -12.19171 -12.17877 -12.12860 -11.90703 -11.30029 -11.18922 -11.10520 -11.05505 -10.95280 -10.65220 -9.88322 -9.38287 -9.06430 -8.09968 -5.42168 -0.55936 0.80632 1.25015 1.27095 1.35248 1.42769 1.74110 2.30545 2.38628 2.71258 3.02991 3.21526 3.37584 3.39493 3.64091 3.75375 3.79854 3.83997 3.86749 3.91716 3.96942 4.01333 4.13330 4.20003 4.26758 4.39322 4.51449 4.56788 4.57625 4.60643 4.69900 4.79928 4.80252 4.82589 4.83414 4.92044 4.99726 5.00460 5.03798 5.15550 5.20866 5.25701 5.26680 5.27419 5.38405 5.52588 5.64888 5.69311 5.98394 6.13941 6.64083 6.94432 6.98297 7.36446 7.74118 7.93999 9.11633 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.005158 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.572120 B = 5426.897586 C = 7593.602228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 C -0.169 4.169 4 C -0.160 4.160 5 N -0.480 5.480 6 C 0.171 3.829 7 C -0.241 4.241 8 C 0.072 3.928 9 C -0.330 4.330 10 C 0.569 3.431 11 O -0.580 6.580 12 N -0.706 5.706 13 C 0.172 3.828 14 H 0.067 0.933 15 C 0.155 3.845 16 N -0.755 5.755 17 C -0.231 4.231 18 H 0.064 0.936 19 C -0.053 4.053 20 N -0.977 5.977 21 Si 0.947 3.053 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.173 4.173 26 C -0.156 4.156 27 C -0.182 4.182 28 C 0.518 3.482 29 O -0.567 6.567 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.224 0.776 40 H 0.199 0.801 41 H 0.152 0.848 42 H 0.413 0.587 43 H 0.049 0.951 44 H 0.031 0.969 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.882 -19.229 -1.232 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 C -0.227 4.227 4 C -0.218 4.218 5 N -0.186 5.186 6 C 0.040 3.960 7 C -0.263 4.263 8 C 0.049 3.951 9 C -0.337 4.337 10 C 0.359 3.641 11 O -0.465 6.465 12 N -0.365 5.365 13 C 0.066 3.934 14 H 0.086 0.914 15 C 0.028 3.972 16 N -0.400 5.400 17 C -0.362 4.362 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.627 5.627 21 Si 0.776 3.224 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.193 4.193 26 C -0.193 4.193 27 C -0.219 4.219 28 C 0.321 3.679 29 O -0.451 6.451 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.241 0.759 40 H 0.216 0.784 41 H 0.169 0.831 42 H 0.259 0.741 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.194 0.806 46 H 0.068 0.932 47 H 0.128 0.872 48 H 0.134 0.866 49 H 0.106 0.894 50 H 0.120 0.880 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.968 -19.140 -1.365 29.929 hybrid contribution -0.034 0.910 0.270 0.949 sum -23.002 -18.231 -1.095 29.371 Atomic orbital electron populations 1.22349 0.88269 1.05210 1.05700 1.21283 0.97614 0.91925 0.83240 1.22259 1.02172 0.94793 1.03452 1.22185 1.02227 1.00868 0.96510 1.45833 1.06528 1.44779 1.21461 1.23326 0.98407 0.87195 0.87042 1.21186 0.95189 1.08980 1.00895 1.22313 0.93165 0.85016 0.94636 1.20955 0.94365 1.16534 1.01871 1.17893 0.86065 0.78516 0.81640 1.90601 1.80348 1.42865 1.32672 1.46685 1.06067 1.53733 1.30005 1.20648 0.80302 0.93403 0.99012 0.91447 1.20997 0.95863 0.83577 0.96754 1.42675 1.39242 1.02075 1.56044 1.19073 1.12052 0.83772 1.21284 0.91762 1.25310 1.02074 0.94790 1.02369 1.69850 1.45503 0.97294 1.50092 0.85517 0.80463 0.76798 0.79633 1.20489 1.21187 1.19981 1.22505 1.06120 0.90911 0.99726 1.22984 0.94747 1.02252 0.99324 1.23286 0.98173 0.96370 1.04084 1.17079 0.82191 0.81502 0.87110 1.90601 1.54134 1.52141 1.48262 0.89605 0.88406 0.88675 0.93790 0.88821 0.92429 0.91090 0.88982 0.93390 0.75936 0.78375 0.83053 0.74149 0.93282 0.95137 0.80604 0.93188 0.87159 0.86594 0.89406 0.87993 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 7.08 71.98 0.51 -0.28 16 2 C 0.14 2.30 1.02 3.61 0.00 2.31 16 3 C -0.17 -3.87 8.39 71.98 0.60 -3.27 16 4 C -0.16 -2.88 8.40 71.98 0.60 -2.27 16 5 N -0.48 -9.37 2.53 -605.53 -1.53 -10.91 16 6 C 0.17 1.70 9.58 83.56 0.80 2.50 16 7 C -0.24 -2.60 9.99 21.99 0.22 -2.38 16 8 C 0.07 1.54 9.69 22.83 0.22 1.76 16 9 C -0.33 -10.33 5.92 -19.79 -0.12 -10.45 16 10 C 0.57 21.84 7.18 86.56 0.62 22.46 16 11 O -0.58 -23.26 13.19 -4.19 -0.06 -23.31 16 12 N -0.71 -28.65 4.41 -446.11 -1.97 -30.61 16 13 C 0.17 6.75 2.42 44.99 0.11 6.86 16 14 H 0.07 2.85 7.39 -2.39 -0.02 2.83 16 15 C 0.15 6.87 5.80 86.38 0.50 7.37 16 16 N -0.76 -40.28 5.24 -343.44 -1.80 -42.08 16 17 C -0.23 -14.27 10.47 84.03 0.88 -13.39 16 18 H 0.06 4.24 8.06 -2.91 -0.02 4.22 16 19 C -0.05 -3.37 5.50 84.86 0.47 -2.90 16 20 N -0.98 -65.12 13.97 21.65 0.30 -64.82 16 21 Si 0.95 50.19 27.73 68.60 1.90 52.09 16 22 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 23 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.27 -14.23 6.52 99.48 0.65 -13.59 16 25 C -0.17 -5.63 5.36 -10.80 -0.06 -5.69 16 26 C -0.16 -4.33 10.18 30.62 0.31 -4.02 16 27 C -0.18 -5.52 9.73 30.62 0.30 -5.22 16 28 C 0.52 15.93 6.84 85.16 0.58 16.51 16 29 O -0.57 -21.66 9.83 -4.94 -0.05 -21.71 16 30 H 0.09 0.21 7.41 -2.39 -0.02 0.19 16 31 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.09 0.04 7.41 -2.39 -0.02 0.02 16 33 H 0.04 1.47 6.10 -2.39 -0.01 1.46 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.29 6.14 -2.39 -0.01 1.28 16 39 H 0.22 -0.20 5.55 -2.91 -0.02 -0.22 16 40 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.15 3.01 7.71 -2.91 -0.02 2.99 16 42 H 0.41 17.98 5.21 -92.76 -0.48 17.49 16 43 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.36 19.39 5.20 -92.71 -0.48 18.91 16 46 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 47 H 0.11 3.40 8.11 -2.39 -0.02 3.38 16 48 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.09 2.55 8.05 -2.39 -0.02 2.53 16 50 H 0.10 3.59 4.84 -2.39 -0.01 3.58 16 51 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -87.33 398.00 3.30 -84.03 By element: Atomic # 1 Polarization: 47.48 SS G_CDS: -0.07 Total: 47.41 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.56 Total: 9.90 kcal Atomic # 7 Polarization: -143.42 SS G_CDS: -5.00 Total: -148.41 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.10 Total: -45.02 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 1.90 Total: 52.09 kcal Total: -87.33 3.30 -84.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569321161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.573 kcal (2) G-P(sol) polarization free energy of solvation -87.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds