Wall clock time and date at job start Wed Apr 1 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47303 * 329.98781 * 3 2 1 5 5 C 1.34778 * 119.99962 * 84.53254 * 4 3 2 6 6 O 1.21617 * 120.00310 * 185.51779 * 5 4 3 7 7 C 1.47105 * 119.99837 * 5.51214 * 5 4 3 8 8 C 1.50699 * 120.00348 * 261.82490 * 7 5 4 9 9 C 1.32998 * 119.99519 * 81.82519 * 7 5 4 10 10 C 1.50702 * 119.99741 * 179.97438 * 9 7 5 11 11 C 1.46503 * 120.00349 * 264.52810 * 4 3 2 12 12 C 1.53115 * 109.51877 * 59.87358 * 11 4 3 13 13 C 1.53052 * 109.27304 * 182.50413 * 12 11 4 14 14 N 1.46840 * 109.57491 * 59.08664 * 13 12 11 15 15 C 1.46896 * 111.00163 * 174.19479 * 14 13 12 16 16 C 1.50700 * 109.46884 * 294.20915 * 15 14 13 17 17 O 1.21293 * 120.00092 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00176 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99884 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00368 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99593 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00121 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46893 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47439 * 119.99645 * 23 21 19 26 26 H 1.48503 * 109.47161 * 240.00077 * 23 21 19 27 27 C 1.46853 * 111.19724 * 298.29084 * 14 13 12 28 28 C 1.53030 * 109.52514 * 61.74035 * 27 14 13 29 29 H 4.40637 * 5.51489 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.46750 * 209.98932 * 3 2 1 31 31 H 1.09000 * 109.46838 * 89.99401 * 3 2 1 32 32 H 1.09004 * 109.46712 * 264.50835 * 8 7 5 33 33 H 1.08998 * 109.46930 * 24.50722 * 8 7 5 34 34 H 1.08993 * 109.46916 * 144.50902 * 8 7 5 35 35 H 1.07998 * 119.99940 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.47172 * 300.00061 * 10 9 7 37 37 H 1.09007 * 109.46845 * 59.99979 * 10 9 7 38 38 H 1.09003 * 109.46985 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.52251 * 179.97438 * 11 4 3 40 40 H 1.08994 * 109.50910 * 302.38170 * 12 11 4 41 41 H 1.09000 * 109.50619 * 62.50295 * 12 11 4 42 42 H 1.09001 * 109.40955 * 299.06791 * 13 12 11 43 43 H 1.09000 * 109.45241 * 179.12721 * 13 12 11 44 44 H 1.08997 * 109.47398 * 54.20453 * 15 14 13 45 45 H 1.09000 * 109.47128 * 174.21010 * 15 14 13 46 46 H 0.97000 * 119.99772 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00153 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.45855 * 301.72495 * 27 14 13 49 49 H 1.08996 * 109.45043 * 181.75538 * 27 14 13 50 50 H 1.08998 * 109.50827 * 180.88355 * 28 27 14 51 51 H 1.09004 * 109.50258 * 60.76065 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1951 0.6908 5 6 3.2552 -2.3585 0.0210 6 8 3.5644 -3.3733 0.6156 7 6 3.0124 -2.4007 -1.4292 8 6 1.6768 -2.8578 -1.9567 9 6 3.9717 -2.0354 -2.2749 10 6 3.7232 -2.0792 -3.7606 11 6 3.4931 -1.1264 2.1097 12 6 2.2701 -0.6997 2.9261 13 6 2.6661 -0.5692 4.3987 14 7 3.7391 0.4241 4.5334 15 6 4.0494 0.6756 5.9470 16 6 2.8648 1.3270 6.6130 17 8 1.8611 1.5593 5.9729 18 7 2.9207 1.6514 7.9200 19 6 1.8432 2.2444 8.5257 20 1 0.9495 2.4513 7.9557 21 6 1.9011 2.5794 9.8730 22 7 2.9887 2.3281 10.5665 23 14 0.4327 3.3868 10.6987 24 1 -0.6588 3.5610 9.7069 25 1 -0.0427 2.5281 11.8129 26 1 0.8326 4.7137 11.2321 27 6 4.9404 0.0113 3.7964 28 6 4.6127 -0.1004 2.3057 29 1 -1.0498 -0.0003 0.0004 30 1 3.0089 0.8910 0.5137 31 1 3.0093 0.0007 -1.0277 32 1 1.7278 -3.9180 -2.2050 33 1 0.9122 -2.6992 -1.1962 34 1 1.4244 -2.2871 -2.8502 35 1 4.9287 -1.7074 -1.8969 36 1 3.4837 -3.0998 -4.0590 37 1 2.8891 -1.4228 -4.0090 38 1 4.6168 -1.7461 -4.2884 39 1 3.8326 -2.1055 2.4475 40 1 1.9062 0.2608 2.5616 41 1 1.4851 -1.4492 2.8245 42 1 3.0158 -1.5338 4.7667 43 1 1.8011 -0.2505 4.9804 44 1 4.2715 -0.2688 6.4439 45 1 4.9141 1.3355 6.0174 46 1 3.7235 1.4659 8.4319 47 1 3.0289 2.5616 11.5071 48 1 5.2794 -0.9559 4.1672 49 1 5.7271 0.7517 3.9408 50 1 5.5003 -0.4220 1.7610 51 1 4.2867 0.8699 1.9311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569585437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:32 Heat of formation + Delta-G solvation = 7.487688 kcal Electronic energy + Delta-G solvation = -30833.966911 eV Core-core repulsion = 26735.444821 eV Total energy + Delta-G solvation = -4098.522089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.65409 -39.00812 -37.66845 -36.14077 -35.88687 -33.93207 -33.21575 -31.84683 -31.17077 -30.70911 -29.69313 -27.71991 -27.23251 -26.31506 -24.55402 -23.09085 -23.00319 -21.13086 -19.82517 -19.17517 -18.85323 -17.99667 -17.84235 -17.13625 -16.75835 -16.00797 -15.58428 -15.44548 -14.91417 -14.68950 -14.52344 -14.27961 -14.21939 -13.99893 -13.79732 -13.60492 -13.42018 -13.26799 -13.11258 -12.98536 -12.91220 -12.79549 -12.39700 -12.29113 -11.86212 -11.73013 -11.64329 -11.47635 -11.29149 -11.12509 -11.06467 -10.62395 -10.61329 -10.41897 -10.36572 -10.33348 -10.21397 -9.95092 -9.47402 -9.29277 -8.97116 -8.41681 -7.96215 -7.81995 -6.40584 -3.81154 1.42419 2.19428 2.44398 2.68455 3.13658 3.16831 3.27314 3.34383 3.91860 4.00303 4.15901 4.24270 4.25582 4.56877 4.71642 4.85883 4.87336 4.91138 4.97747 5.04966 5.08666 5.13891 5.17746 5.26355 5.32973 5.34176 5.39429 5.48597 5.49705 5.54082 5.59885 5.67645 5.70336 5.75942 5.82758 5.86075 5.98727 6.03004 6.03842 6.12411 6.21681 6.27567 6.32730 6.44416 6.53617 7.09646 7.31950 7.44171 7.44742 7.56560 7.89435 8.08152 8.63408 9.19635 9.56274 10.08085 10.77267 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002089 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.310544 B =13401.877999 C =14057.325667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.207 4.207 3 C 0.217 3.783 4 N -0.597 5.597 5 C 0.561 3.439 6 O -0.533 6.533 7 C -0.159 4.159 8 C -0.105 4.105 9 C -0.124 4.124 10 C -0.124 4.124 11 C 0.135 3.865 12 C -0.115 4.115 13 C 0.056 3.944 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.121 4.121 29 H 0.216 0.784 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.107 0.893 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.032 0.968 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -6.999 -25.682 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.208 4.208 3 C 0.095 3.905 4 N -0.328 5.328 5 C 0.349 3.651 6 O -0.409 6.409 7 C -0.162 4.162 8 C -0.162 4.162 9 C -0.143 4.143 10 C -0.180 4.180 11 C 0.033 3.967 12 C -0.154 4.154 13 C -0.072 4.072 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.160 4.160 29 H 0.233 0.767 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.125 0.875 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.914 -6.922 -25.787 26.858 hybrid contribution -0.050 -0.363 1.330 1.379 sum 2.865 -7.285 -24.457 25.680 Atomic orbital electron populations 1.24942 0.95919 0.98736 1.00126 1.23372 0.94747 1.01702 1.00994 1.18394 0.84080 0.89231 0.98803 1.48080 1.64309 1.09458 1.10986 1.18641 0.76067 0.82895 0.87492 1.90814 1.47454 1.33104 1.69573 1.21408 0.98532 1.03919 0.92338 1.20689 0.92727 1.01534 1.01211 1.23218 0.97915 0.97756 0.95454 1.20873 1.02442 1.02490 0.92220 1.21347 0.95553 1.00878 0.78911 1.21862 0.96435 1.02177 0.94897 1.22218 0.96773 0.92130 0.96116 1.61531 1.06990 1.45086 1.10390 1.21832 0.98523 0.99879 0.88262 1.19754 0.89294 0.85090 0.82896 1.90482 1.33372 1.58440 1.63800 1.41881 1.16741 1.53710 1.07859 1.19738 0.95208 1.34893 0.92812 0.87879 1.25259 0.98214 0.98043 0.96521 1.69620 1.27288 1.48118 1.09325 0.85811 0.80989 0.78561 0.79046 1.19240 1.20808 1.20776 1.22043 0.92898 0.99180 0.92985 1.21921 0.97817 0.99706 0.96526 0.76673 0.87298 0.88204 0.90776 0.91722 0.90777 0.86715 0.91115 0.90925 0.91607 0.88299 0.90439 0.91764 0.95876 0.87477 0.93464 0.89301 0.77507 0.91960 0.94972 0.90313 0.91328 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.21 -2.14 12.43 -37.12 -0.46 -2.61 16 3 C 0.22 1.98 4.96 -6.83 -0.03 1.95 16 4 N -0.60 -6.70 2.36 -170.67 -0.40 -7.11 16 5 C 0.56 7.02 6.96 -12.66 -0.09 6.93 16 6 O -0.53 -8.79 16.45 5.26 0.09 -8.71 16 7 C -0.16 -1.48 4.25 -102.84 -0.44 -1.92 16 8 C -0.10 -0.82 9.45 36.01 0.34 -0.48 16 9 C -0.12 -0.90 9.17 -36.12 -0.33 -1.23 16 10 C -0.12 -0.59 8.98 36.01 0.32 -0.27 16 11 C 0.14 1.71 2.58 -67.81 -0.17 1.53 16 12 C -0.12 -1.66 5.01 -26.64 -0.13 -1.80 16 13 C 0.06 0.93 5.10 -3.83 -0.02 0.91 16 14 N -0.52 -8.50 4.40 -236.12 -1.04 -9.54 16 15 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.41 7.46 -10.98 -0.08 10.33 16 17 O -0.58 -15.33 13.90 5.55 0.08 -15.25 16 18 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 19 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 C 0.06 0.74 5.46 -3.83 -0.02 0.71 16 28 C -0.12 -1.35 5.41 -26.65 -0.14 -1.49 16 29 H 0.22 1.48 7.80 -54.10 -0.42 1.05 16 30 H 0.11 0.94 6.40 -51.93 -0.33 0.61 16 31 H 0.10 0.70 6.40 -51.93 -0.33 0.37 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.07 0.43 6.71 -51.93 -0.35 0.08 16 35 H 0.11 0.80 8.05 -52.49 -0.42 0.38 16 36 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 37 H 0.07 0.30 7.41 -51.93 -0.38 -0.09 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 1.43 6.92 -51.93 -0.36 1.07 16 40 H 0.08 1.19 7.04 -51.93 -0.37 0.82 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.11 2.18 5.78 -51.93 -0.30 1.88 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 45 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 46 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.84 6.58 -51.93 -0.34 0.50 16 LS Contribution 415.04 15.07 6.25 6.25 Total: -1.00 -33.61 415.04 -8.41 -42.02 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.07 Total: 10.20 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.96 Total: 4.27 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.78 Total: -54.86 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.16 Total: -23.96 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.61 -8.41 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569585437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.512 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds