Wall clock time and date at job start Wed Apr 1 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47303 * 329.98781 * 3 2 1 5 5 C 1.34778 * 119.99962 * 84.53254 * 4 3 2 6 6 O 1.21617 * 120.00310 * 185.51779 * 5 4 3 7 7 C 1.47105 * 119.99837 * 5.51214 * 5 4 3 8 8 C 1.50699 * 120.00348 * 261.82490 * 7 5 4 9 9 C 1.32998 * 119.99519 * 81.82519 * 7 5 4 10 10 C 1.50702 * 119.99741 * 179.97438 * 9 7 5 11 11 C 1.46503 * 120.00349 * 264.52810 * 4 3 2 12 12 C 1.53115 * 109.51877 * 59.87358 * 11 4 3 13 13 C 1.53052 * 109.27304 * 182.50413 * 12 11 4 14 14 N 1.46840 * 109.57491 * 59.08664 * 13 12 11 15 15 C 1.46896 * 111.00163 * 174.19479 * 14 13 12 16 16 C 1.50700 * 109.46884 * 294.20915 * 15 14 13 17 17 O 1.21293 * 120.00092 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00176 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99884 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00368 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99593 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00121 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46893 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47439 * 119.99645 * 23 21 19 26 26 H 1.48503 * 109.47161 * 240.00077 * 23 21 19 27 27 C 1.46853 * 111.19724 * 298.29084 * 14 13 12 28 28 C 1.53030 * 109.52514 * 61.74035 * 27 14 13 29 29 H 4.40637 * 5.51489 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.46750 * 209.98932 * 3 2 1 31 31 H 1.09000 * 109.46838 * 89.99401 * 3 2 1 32 32 H 1.09004 * 109.46712 * 264.50835 * 8 7 5 33 33 H 1.08998 * 109.46930 * 24.50722 * 8 7 5 34 34 H 1.08993 * 109.46916 * 144.50902 * 8 7 5 35 35 H 1.07998 * 119.99940 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.47172 * 300.00061 * 10 9 7 37 37 H 1.09007 * 109.46845 * 59.99979 * 10 9 7 38 38 H 1.09003 * 109.46985 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.52251 * 179.97438 * 11 4 3 40 40 H 1.08994 * 109.50910 * 302.38170 * 12 11 4 41 41 H 1.09000 * 109.50619 * 62.50295 * 12 11 4 42 42 H 1.09001 * 109.40955 * 299.06791 * 13 12 11 43 43 H 1.09000 * 109.45241 * 179.12721 * 13 12 11 44 44 H 1.08997 * 109.47398 * 54.20453 * 15 14 13 45 45 H 1.09000 * 109.47128 * 174.21010 * 15 14 13 46 46 H 0.97000 * 119.99772 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00153 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.45855 * 301.72495 * 27 14 13 49 49 H 1.08996 * 109.45043 * 181.75538 * 27 14 13 50 50 H 1.08998 * 109.50827 * 180.88355 * 28 27 14 51 51 H 1.09004 * 109.50258 * 60.76065 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1951 0.6908 5 6 3.2552 -2.3585 0.0210 6 8 3.5644 -3.3733 0.6156 7 6 3.0124 -2.4007 -1.4292 8 6 1.6768 -2.8578 -1.9567 9 6 3.9717 -2.0354 -2.2749 10 6 3.7232 -2.0792 -3.7606 11 6 3.4931 -1.1264 2.1097 12 6 2.2701 -0.6997 2.9261 13 6 2.6661 -0.5692 4.3987 14 7 3.7391 0.4241 4.5334 15 6 4.0494 0.6756 5.9470 16 6 2.8648 1.3270 6.6130 17 8 1.8611 1.5593 5.9729 18 7 2.9207 1.6514 7.9200 19 6 1.8432 2.2444 8.5257 20 1 0.9495 2.4513 7.9557 21 6 1.9011 2.5794 9.8730 22 7 2.9887 2.3281 10.5665 23 14 0.4327 3.3868 10.6987 24 1 -0.6588 3.5610 9.7069 25 1 -0.0427 2.5281 11.8129 26 1 0.8326 4.7137 11.2321 27 6 4.9404 0.0113 3.7964 28 6 4.6127 -0.1004 2.3057 29 1 -1.0498 -0.0003 0.0004 30 1 3.0089 0.8910 0.5137 31 1 3.0093 0.0007 -1.0277 32 1 1.7278 -3.9180 -2.2050 33 1 0.9122 -2.6992 -1.1962 34 1 1.4244 -2.2871 -2.8502 35 1 4.9287 -1.7074 -1.8969 36 1 3.4837 -3.0998 -4.0590 37 1 2.8891 -1.4228 -4.0090 38 1 4.6168 -1.7461 -4.2884 39 1 3.8326 -2.1055 2.4475 40 1 1.9062 0.2608 2.5616 41 1 1.4851 -1.4492 2.8245 42 1 3.0158 -1.5338 4.7667 43 1 1.8011 -0.2505 4.9804 44 1 4.2715 -0.2688 6.4439 45 1 4.9141 1.3355 6.0174 46 1 3.7235 1.4659 8.4319 47 1 3.0289 2.5616 11.5071 48 1 5.2794 -0.9559 4.1672 49 1 5.7271 0.7517 3.9408 50 1 5.5003 -0.4220 1.7610 51 1 4.2867 0.8699 1.9311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569585437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:31 Heat of formation + Delta-G solvation = -14.429609 kcal Electronic energy + Delta-G solvation = -30834.917316 eV Core-core repulsion = 26735.444821 eV Total energy + Delta-G solvation = -4099.472495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62914 -40.49256 -39.16012 -37.17374 -36.64071 -35.88960 -34.19386 -33.30389 -32.78614 -31.85587 -30.23845 -28.97193 -28.14653 -27.23478 -26.21653 -24.27397 -24.15495 -22.06057 -21.03795 -20.82568 -19.87086 -19.68684 -18.74958 -18.04634 -17.74794 -17.54126 -16.77236 -16.51961 -16.45756 -16.24046 -15.74107 -15.46505 -15.37198 -15.02443 -14.97607 -14.74757 -14.55823 -14.34483 -14.07826 -13.90222 -13.79759 -13.51202 -13.45246 -13.39154 -13.21297 -12.95664 -12.95530 -12.77808 -12.49617 -12.38552 -12.24480 -12.20088 -12.11773 -11.81088 -11.67116 -11.43343 -11.37685 -11.15730 -10.86954 -10.27128 -10.01623 -9.95395 -9.85518 -9.22192 -8.46037 -5.94216 0.79909 1.29826 1.36075 1.41086 1.55155 1.59019 1.91743 2.06688 2.28099 2.30890 2.74530 3.20839 3.37301 3.42604 3.50937 3.74084 3.83664 3.97821 4.03144 4.15478 4.18902 4.25862 4.34114 4.37154 4.39500 4.46369 4.48815 4.54166 4.56400 4.60169 4.68331 4.70811 4.84632 4.87920 4.90587 4.94661 5.02220 5.03826 5.07186 5.09281 5.14405 5.26691 5.39415 5.41914 5.53377 5.66576 5.88226 6.06845 6.20057 6.23487 6.61896 6.69071 6.96279 7.14218 7.58039 8.13986 8.71636 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002089 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.310544 B =13401.877999 C =14057.325667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.230 4.230 3 C 0.216 3.784 4 N -0.592 5.592 5 C 0.558 3.442 6 O -0.583 6.583 7 C -0.187 4.187 8 C -0.099 4.099 9 C -0.101 4.101 10 C -0.124 4.124 11 C 0.141 3.859 12 C -0.101 4.101 13 C 0.061 3.939 14 N -0.528 5.528 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.056 3.944 28 C -0.112 4.112 29 H 0.236 0.764 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.026 0.974 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.038 0.962 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -6.338 -27.594 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.231 4.231 3 C 0.095 3.905 4 N -0.322 5.322 5 C 0.348 3.652 6 O -0.463 6.463 7 C -0.190 4.190 8 C -0.155 4.155 9 C -0.119 4.119 10 C -0.180 4.180 11 C 0.038 3.962 12 C -0.140 4.140 13 C -0.068 4.068 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.498 6.498 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.196 1.196 27 C -0.071 4.071 28 C -0.150 4.150 29 H 0.253 0.747 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.134 0.866 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.118 0.882 50 H 0.110 0.890 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.147 -6.244 -27.718 28.713 hybrid contribution -0.426 -0.581 1.860 1.994 sum 3.721 -6.824 -25.858 27.001 Atomic orbital electron populations 1.25624 0.96851 0.98101 0.99656 1.23780 0.95511 1.02288 1.01516 1.18628 0.83576 0.88296 1.00024 1.48093 1.63713 1.10076 1.10288 1.19234 0.74841 0.82235 0.88842 1.90780 1.49839 1.34764 1.70910 1.21318 1.00081 1.07086 0.90473 1.20665 0.91520 1.01904 1.01457 1.23500 0.97064 0.94767 0.96610 1.20958 1.03707 1.03144 0.90217 1.21143 0.95005 1.00362 0.79672 1.21679 0.97131 1.01318 0.93861 1.22024 0.95673 0.92150 0.96911 1.61510 1.08569 1.45448 1.09777 1.21729 0.96293 1.00506 0.88845 1.20779 0.90374 0.83714 0.82223 1.90463 1.35358 1.59511 1.64493 1.41946 1.16387 1.54313 1.08675 1.19672 0.95585 1.36985 0.93626 0.90361 1.26027 1.00863 0.98050 0.96492 1.69678 1.28504 1.48273 1.09788 0.84885 0.77595 0.78075 0.77866 1.19830 1.19751 1.19562 1.22190 0.91606 1.00094 0.93240 1.21878 0.97952 0.99419 0.95757 0.74710 0.86606 0.85710 0.90859 0.93523 0.88434 0.86369 0.90673 0.89575 0.90198 0.90189 0.91280 0.92926 0.95608 0.91657 0.91886 0.86616 0.77065 0.91377 0.94354 0.88186 0.89009 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 19.25 74.32 1.43 -2.06 16 2 C -0.23 -4.61 12.43 31.13 0.39 -4.22 16 3 C 0.22 3.63 4.96 84.57 0.42 4.05 16 4 N -0.59 -12.92 2.36 -812.12 -1.92 -14.84 16 5 C 0.56 13.86 6.96 86.57 0.60 14.47 16 6 O -0.58 -19.73 16.45 -4.08 -0.07 -19.80 16 7 C -0.19 -3.24 4.25 -18.70 -0.08 -3.32 16 8 C -0.10 -1.44 9.45 71.24 0.67 -0.76 16 9 C -0.10 -1.20 9.17 24.52 0.22 -0.98 16 10 C -0.12 -0.78 8.98 71.24 0.64 -0.14 16 11 C 0.14 3.52 2.58 45.07 0.12 3.64 16 12 C -0.10 -3.01 5.01 30.65 0.15 -2.85 16 13 C 0.06 2.10 5.10 86.33 0.44 2.55 16 14 N -0.53 -17.05 4.40 -900.94 -3.96 -21.02 16 15 C 0.06 2.00 5.45 85.56 0.47 2.46 16 16 C 0.44 21.14 7.46 87.66 0.65 21.80 16 17 O -0.61 -33.81 13.90 -3.07 -0.04 -33.85 16 18 N -0.58 -29.76 5.29 -306.98 -1.62 -31.38 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 22 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 23 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.06 1.31 5.46 86.32 0.47 1.78 16 28 C -0.11 -2.26 5.41 30.64 0.17 -2.09 16 29 H 0.24 3.05 7.80 -4.43 -0.03 3.02 16 30 H 0.12 1.79 6.40 -2.38 -0.02 1.77 16 31 H 0.13 1.45 6.40 -2.39 -0.02 1.43 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.10 0.90 6.71 -2.39 -0.02 0.88 16 35 H 0.12 1.33 8.05 -2.91 -0.02 1.30 16 36 H 0.07 0.47 8.10 -2.39 -0.02 0.45 16 37 H 0.09 0.37 7.41 -2.38 -0.02 0.35 16 38 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 2.35 6.92 -2.39 -0.02 2.33 16 40 H 0.07 2.16 7.04 -2.39 -0.02 2.15 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 2.82 5.78 -2.39 -0.01 2.80 16 44 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 45 H 0.12 3.44 7.99 -2.39 -0.02 3.42 16 46 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 47 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 48 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 1.95 8.01 -2.39 -0.02 1.93 16 50 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.08 1.62 6.58 -2.38 -0.02 1.60 16 Total: -1.00 -75.80 415.04 2.94 -72.86 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.20 Total: 36.45 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 8.05 Total: 15.99 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -7.22 Total: -117.08 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.11 Total: -53.65 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -75.80 2.94 -72.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569585437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.430 kcal (2) G-P(sol) polarization free energy of solvation -75.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds